Wall clock time and date at job start Tue Mar 31 2020 22:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00014 * 2 1 4 4 H 1.48497 * 109.47128 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46935 * 299.99697 * 3 2 1 6 6 H 1.48498 * 109.47450 * 59.99678 * 3 2 1 7 7 C 1.37879 * 119.99760 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99761 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00113 * 0.02562 * 7 2 1 10 10 S 1.81399 * 109.46936 * 179.97438 * 9 7 2 11 11 O 1.42094 * 110.54459 * 68.37477 * 10 9 7 12 12 O 1.42101 * 110.54298 * 291.62341 * 10 9 7 13 13 N 1.65603 * 104.44745 * 180.02562 * 10 9 7 14 14 C 1.34776 * 120.00319 * 65.27098 * 13 10 9 15 15 O 1.21585 * 119.99680 * 359.73041 * 14 13 10 16 16 C 1.47534 * 119.99853 * 179.72184 * 14 13 10 17 17 C 1.39709 * 120.19231 * 0.02562 * 16 14 13 18 18 C 1.37789 * 119.90462 * 179.97438 * 17 16 14 19 19 C 1.38546 * 120.30067 * 0.02562 * 18 17 16 20 20 C 1.38048 * 120.39456 * 359.97438 * 19 18 17 21 21 C 1.38710 * 120.08133 * 359.73947 * 20 19 18 22 22 O 1.35655 * 120.15233 * 180.28150 * 21 20 19 23 23 C 1.42903 * 116.99752 * 6.05851 * 22 21 20 24 24 C 1.53784 * 113.61394 * 255.34616 * 23 22 21 25 25 C 1.53781 * 87.08285 * 220.02082 * 24 23 22 26 26 C 1.53781 * 87.08074 * 25.42953 * 25 24 23 27 27 H 0.97003 * 120.00063 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47321 * 59.99823 * 9 7 2 29 29 H 1.08996 * 109.46947 * 299.99641 * 9 7 2 30 30 H 0.97000 * 119.99587 * 244.99936 * 13 10 9 31 31 H 1.08000 * 120.04734 * 359.97438 * 17 16 14 32 32 H 1.07997 * 119.84634 * 179.97438 * 18 17 16 33 33 H 1.08004 * 119.80223 * 179.97438 * 19 18 17 34 34 H 1.08000 * 119.95978 * 180.02562 * 20 19 18 35 35 H 1.08997 * 112.85136 * 26.65204 * 23 22 21 36 36 H 1.09006 * 113.61102 * 334.56790 * 24 23 22 37 37 H 1.08996 * 113.61896 * 105.46944 * 24 23 22 38 38 H 1.09003 * 113.61207 * 270.88238 * 25 24 23 39 39 H 1.08998 * 113.61684 * 139.97913 * 25 24 23 40 40 H 1.09002 * 113.61531 * 220.02126 * 26 25 24 41 41 H 1.09006 * 113.69231 * 89.13026 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 16 2.4297 -3.8780 0.0005 11 8 3.1265 -3.9383 1.2374 12 8 3.1265 -3.9383 -1.2365 13 7 1.4793 -5.2341 -0.0002 14 6 0.6931 -5.5055 -1.0607 15 8 0.6779 -4.7520 -2.0148 16 6 -0.1490 -6.7169 -1.0638 17 6 -0.1348 -7.5852 0.0306 18 6 -0.9240 -8.7147 0.0216 19 6 -1.7320 -8.9942 -1.0686 20 6 -1.7556 -8.1448 -2.1565 21 6 -0.9721 -7.0002 -2.1620 22 8 -0.9985 -6.1615 -3.2279 23 6 -1.9529 -6.4450 -4.2530 24 6 -1.3338 -7.0655 -5.5166 25 6 -2.2934 -6.1783 -6.3271 26 6 -2.3061 -5.2253 -5.1203 27 1 -0.4850 0.8401 -0.0004 28 1 0.6246 -2.5571 -0.8897 29 1 0.6240 -2.5567 0.8903 30 1 1.4915 -5.8352 0.7610 31 1 0.4938 -7.3715 0.8824 32 1 -0.9121 -9.3855 0.8679 33 1 -2.3471 -9.8820 -1.0673 34 1 -2.3884 -8.3693 -3.0024 35 1 -2.8246 -6.9843 -3.8823 36 1 -0.2826 -6.8133 -5.6567 37 1 -1.5318 -8.1322 -5.6213 38 1 -3.2582 -6.6456 -6.5247 39 1 -1.8404 -5.7467 -7.2196 40 1 -3.2892 -4.8064 -4.9050 41 1 -1.5214 -4.4693 -5.1509 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835411812.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:22 Heat of formation + Delta-G solvation = -123.820829 kcal Electronic energy + Delta-G solvation = -27408.121080 eV Core-core repulsion = 23380.469046 eV Total energy + Delta-G solvation = -4027.652034 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.88676 -40.68558 -39.15691 -38.12386 -37.29385 -37.09556 -35.61413 -35.43785 -32.24383 -31.14297 -30.94221 -26.68771 -26.44769 -25.78836 -25.40338 -23.24367 -22.45796 -20.90624 -20.56575 -19.86197 -19.22253 -18.69249 -18.34529 -17.56146 -17.13671 -16.76561 -16.59983 -16.34925 -16.23466 -16.07976 -15.75312 -15.45056 -15.14838 -14.80990 -14.53835 -14.17804 -13.68838 -13.59073 -13.50787 -13.47218 -13.29156 -13.23353 -13.14068 -12.83211 -12.76907 -12.58819 -12.43349 -12.32849 -12.06170 -12.02633 -11.83089 -11.43432 -11.26677 -11.19797 -11.07748 -10.82402 -10.13003 -9.25193 -8.45262 -6.65407 -0.78104 -0.28218 0.39194 1.34894 1.36814 1.46548 1.51379 1.60082 2.22689 2.28115 2.68126 2.78901 2.88601 3.14371 3.38826 3.49705 3.56640 3.72571 3.80669 3.84806 3.90623 4.02304 4.16738 4.36234 4.46573 4.52424 4.60073 4.71503 4.72663 4.76308 4.80499 4.94650 4.99936 5.06288 5.14356 5.25812 5.31077 5.37413 5.44458 5.64123 5.73398 5.78433 6.43822 6.47248 6.54626 7.06503 8.68310 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.011600 B = 0.003774 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2413.295671 B = 7417.386812 C = 8957.476032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.024 3.976 3 Si 0.971 3.029 4 H -0.261 1.261 5 H -0.268 1.268 6 H -0.260 1.260 7 C -0.569 4.569 8 H 0.069 0.931 9 C -0.419 4.419 10 S 2.600 3.400 11 O -0.976 6.976 12 O -0.986 6.986 13 N -1.042 6.042 14 C 0.571 3.429 15 O -0.519 6.519 16 C -0.213 4.213 17 C -0.045 4.045 18 C -0.162 4.162 19 C -0.033 4.033 20 C -0.222 4.222 21 C 0.169 3.831 22 O -0.305 6.305 23 C 0.034 3.966 24 C -0.152 4.152 25 C -0.122 4.122 26 C -0.145 4.145 27 H 0.275 0.725 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.442 0.558 31 H 0.156 0.844 32 H 0.169 0.831 33 H 0.172 0.828 34 H 0.160 0.840 35 H 0.128 0.872 36 H 0.068 0.932 37 H 0.098 0.902 38 H 0.113 0.887 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.599 -22.460 -4.209 25.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.179 4.179 3 Si 0.793 3.207 4 H -0.184 1.184 5 H -0.193 1.193 6 H -0.185 1.185 7 C -0.608 4.608 8 H 0.087 0.913 9 C -0.554 4.554 10 S 2.701 3.299 11 O -0.966 6.966 12 O -0.976 6.976 13 N -0.808 5.808 14 C 0.361 3.639 15 O -0.393 6.393 16 C -0.219 4.219 17 C -0.064 4.064 18 C -0.180 4.180 19 C -0.051 4.051 20 C -0.241 4.241 21 C 0.120 3.880 22 O -0.218 6.218 23 C -0.021 4.021 24 C -0.190 4.190 25 C -0.160 4.160 26 C -0.183 4.183 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.104 0.896 30 H 0.282 0.718 31 H 0.173 0.827 32 H 0.187 0.813 33 H 0.190 0.810 34 H 0.178 0.822 35 H 0.145 0.855 36 H 0.087 0.913 37 H 0.117 0.883 38 H 0.132 0.868 39 H 0.098 0.902 40 H 0.104 0.896 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.693 -21.689 -4.971 24.271 hybrid contribution -0.126 1.130 0.305 1.177 sum -9.819 -20.559 -4.666 23.256 Atomic orbital electron populations 1.70063 1.07745 1.28970 1.47728 1.25932 0.96028 1.03401 0.92560 0.85309 0.79105 0.77357 0.78953 1.18427 1.19320 1.18465 1.20772 0.93136 0.90311 1.56611 0.91298 1.27640 1.10673 1.10848 1.06229 1.05403 0.76079 0.75489 0.72964 1.93491 1.71368 1.86369 1.45392 1.93481 1.71770 1.85887 1.46460 1.54848 1.55999 1.42597 1.27387 1.18660 0.78274 0.86486 0.80462 1.90992 1.64467 1.49836 1.34006 1.19291 1.05627 0.98609 0.98372 1.21552 0.97004 0.92703 0.95091 1.21457 0.97878 0.97726 1.00896 1.21708 0.94771 0.98006 0.90616 1.21557 1.04054 0.95040 1.03427 1.19484 0.92693 0.89791 0.86000 1.86470 1.56239 1.50320 1.28726 1.24744 0.92288 0.99745 0.85346 1.23452 0.99799 1.01292 0.94439 1.22661 1.00821 0.96322 0.96149 1.23239 1.02268 0.96841 0.95950 0.91593 0.90741 0.89602 0.71840 0.82684 0.81318 0.81015 0.82225 0.85454 0.91297 0.88340 0.86850 0.90200 0.89560 0.91774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.58 13.29 21.45 0.28 -54.30 16 2 C 0.02 1.40 5.46 84.66 0.46 1.86 16 3 Si 0.97 44.57 29.54 68.60 2.03 46.60 16 4 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 5 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 6 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 7 C -0.57 -34.04 9.13 25.60 0.23 -33.81 16 8 H 0.07 4.01 7.71 -2.91 -0.02 3.99 16 9 C -0.42 -22.91 5.65 71.24 0.40 -22.51 16 10 S 2.60 122.72 5.03 -56.49 -0.28 122.43 16 11 O -0.98 -46.30 18.08 -127.65 -2.31 -48.61 16 12 O -0.99 -53.58 17.02 -120.69 -2.05 -55.63 16 13 N -1.04 -37.67 5.55 -175.82 -0.98 -38.65 16 14 C 0.57 22.55 7.50 86.70 0.65 23.20 16 15 O -0.52 -25.67 13.26 24.13 0.32 -25.35 16 16 C -0.21 -6.37 5.89 -20.01 -0.12 -6.48 16 17 C -0.05 -0.89 9.54 22.52 0.21 -0.67 16 18 C -0.16 -2.09 10.02 22.24 0.22 -1.86 16 19 C -0.03 -0.39 10.03 22.30 0.22 -0.17 16 20 C -0.22 -3.88 9.00 22.34 0.20 -3.68 16 21 C 0.17 4.73 6.69 22.84 0.15 4.88 16 22 O -0.31 -10.07 8.22 -68.78 -0.57 -10.64 16 23 C 0.03 0.76 3.63 31.12 0.11 0.87 16 24 C -0.15 -2.81 7.91 31.12 0.25 -2.56 16 25 C -0.12 -1.89 8.08 31.12 0.25 -1.64 16 26 C -0.15 -3.31 7.91 31.12 0.25 -3.06 16 27 H 0.28 15.16 8.31 -92.71 -0.77 14.39 16 28 H 0.07 4.40 7.20 -2.39 -0.02 4.38 16 29 H 0.09 4.53 8.14 -2.39 -0.02 4.51 16 30 H 0.44 11.26 6.82 -96.75 -0.66 10.60 16 31 H 0.16 2.20 6.40 -2.91 -0.02 2.18 16 32 H 0.17 0.96 8.06 -2.91 -0.02 0.93 16 33 H 0.17 0.63 8.06 -2.91 -0.02 0.61 16 34 H 0.16 1.87 5.95 -2.91 -0.02 1.86 16 35 H 0.13 1.96 6.05 -2.39 -0.01 1.95 16 36 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 37 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 Total: -1.00 -88.52 359.31 0.36 -88.15 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: 0.42 Total: 21.62 kcal Atomic # 6 Polarization: -49.14 SS G_CDS: 3.50 Total: -45.63 kcal Atomic # 7 Polarization: -92.25 SS G_CDS: -0.69 Total: -92.94 kcal Atomic # 8 Polarization: -135.62 SS G_CDS: -4.61 Total: -140.23 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Atomic # 16 Polarization: 122.72 SS G_CDS: -0.28 Total: 122.43 kcal Total: -88.52 0.36 -88.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835411812.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.668 kcal (2) G-P(sol) polarization free energy of solvation -88.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds