Wall clock time and date at job start Tue Mar 31 2020 23:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35913 * 116.99538 * 2 1 4 4 C 1.38898 * 119.97627 * 359.72640 * 3 2 1 5 5 C 1.38284 * 120.29079 * 179.76205 * 4 3 2 6 6 C 1.37931 * 120.23244 * 0.51326 * 5 4 3 7 7 C 1.39832 * 119.94226 * 359.74695 * 6 5 4 8 8 C 1.47210 * 120.14935 * 179.97438 * 7 6 5 9 9 C 1.50695 * 120.00412 * 115.01797 * 8 7 6 10 10 C 1.34807 * 119.99883 * 295.02533 * 8 7 6 11 11 C 1.46431 * 119.99898 * 185.63706 * 10 8 7 12 12 O 1.21691 * 120.00189 * 5.60163 * 11 10 8 13 13 N 1.34776 * 120.00037 * 185.61048 * 11 10 8 14 14 S 1.65600 * 120.00394 * 179.97438 * 13 11 10 15 15 O 1.42095 * 104.27891 * 181.07055 * 14 13 11 16 16 O 1.42096 * 104.27717 * 308.93179 * 14 13 11 17 17 C 1.81404 * 104.44656 * 64.99900 * 14 13 11 18 18 C 1.50700 * 109.46905 * 180.02562 * 17 14 13 19 19 H 1.07994 * 120.00009 * 359.97438 * 18 17 14 20 20 C 1.37878 * 119.99958 * 180.02562 * 18 17 14 21 21 N 1.31516 * 120.00038 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00111 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47161 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47177 * 119.99888 * 22 20 18 25 25 H 1.48503 * 109.47047 * 239.99582 * 22 20 18 26 26 C 1.38387 * 119.96706 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.46880 * 299.99810 * 1 2 3 28 28 H 1.08995 * 109.47369 * 59.99603 * 1 2 3 29 29 H 1.08998 * 109.46806 * 179.97438 * 1 2 3 30 30 H 1.08005 * 119.84863 * 0.02562 * 4 3 2 31 31 H 1.08005 * 119.88177 * 180.25745 * 5 4 3 32 32 H 1.08009 * 120.03277 * 179.76180 * 6 5 4 33 33 H 1.09009 * 109.46854 * 354.81122 * 9 8 7 34 34 H 1.09003 * 109.47443 * 114.80319 * 9 8 7 35 35 H 1.08995 * 109.47998 * 234.81018 * 9 8 7 36 36 H 1.08003 * 119.99951 * 5.62181 * 10 8 7 37 37 H 0.97008 * 119.99983 * 359.97438 * 13 11 10 38 38 H 1.09004 * 109.46960 * 300.00148 * 17 14 13 39 39 H 1.08998 * 109.47131 * 60.00037 * 17 14 13 40 40 H 0.96995 * 120.00469 * 180.02562 * 21 20 18 41 41 H 1.07991 * 120.11683 * 359.95507 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2889 2.3756 -0.0057 5 6 1.9098 3.6112 -0.0008 6 6 3.2864 3.6966 -0.0008 7 6 4.0581 2.5305 -0.0005 8 6 5.5277 2.6165 -0.0011 9 6 6.3126 2.1101 1.1815 10 6 6.1714 3.1483 -1.0595 11 6 7.6344 3.1220 -1.1155 12 8 8.2656 2.5315 -0.2589 13 7 8.2819 3.7520 -2.1156 14 16 9.9364 3.7229 -2.1787 15 8 10.2570 4.4954 -3.3274 16 8 10.3439 4.1354 -0.8814 17 6 10.3483 1.9772 -2.4502 18 6 11.8452 1.8203 -2.5258 19 1 12.4847 2.6842 -2.4215 20 6 12.3983 0.5737 -2.7293 21 7 11.6195 -0.4783 -2.8569 22 14 14.2536 0.3792 -2.8238 23 1 14.8998 1.7052 -2.6517 24 1 14.7106 -0.5378 -1.7489 25 1 14.6256 -0.1843 -4.1465 26 6 3.4280 1.2828 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2105 2.3157 -0.0098 31 1 1.3146 4.5125 -0.0011 32 1 3.7680 4.6634 -0.0009 33 1 5.6249 1.8046 1.9701 34 1 6.9184 1.2566 0.8770 35 1 6.9622 2.9027 1.5528 36 1 5.6080 3.5934 -1.8662 37 1 7.7787 4.2226 -2.7986 38 1 9.9620 1.3801 -1.6242 39 1 9.8995 1.6390 -3.3841 40 1 12.0084 -1.3553 -2.9997 41 1 4.0175 0.3780 -0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835412015.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:34 Heat of formation + Delta-G solvation = -110.274939 kcal Electronic energy + Delta-G solvation = -26259.302925 eV Core-core repulsion = 22232.238284 eV Total energy + Delta-G solvation = -4027.064640 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.50601 -39.82203 -38.00193 -36.20621 -35.14470 -34.83448 -34.01006 -33.32234 -31.13971 -29.92966 -29.02138 -27.97280 -27.56156 -24.10576 -23.48141 -22.65630 -21.79534 -19.72626 -19.07942 -17.79148 -17.16492 -17.13472 -16.55556 -16.38347 -16.19691 -16.08837 -15.64292 -15.05031 -14.75622 -14.51062 -14.29275 -14.20657 -14.07067 -13.85197 -13.29347 -12.79337 -12.75993 -12.50959 -12.27908 -12.10438 -11.99394 -11.82988 -11.72974 -11.43085 -11.42300 -11.25243 -11.22090 -11.14910 -10.91489 -10.62050 -10.39505 -9.85675 -9.70539 -9.56390 -9.13797 -8.94762 -8.69018 -8.54003 -6.30654 -4.41435 0.64992 1.10394 1.11843 1.28049 2.88876 3.08085 3.22455 3.27209 3.30904 3.36406 3.40074 4.19641 4.27338 4.42774 4.59559 4.67511 4.70945 4.74973 4.82213 4.89117 4.98340 5.03009 5.07435 5.13634 5.21931 5.24539 5.32788 5.50134 5.65696 5.85508 5.87163 5.95633 6.04899 6.17236 6.22708 6.34416 6.47901 6.64468 6.81358 7.03223 7.10514 7.45130 7.76339 7.86902 8.60020 9.25699 10.81204 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.017510 B = 0.002476 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.672738 B =11306.832778 C =12300.001880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.316 6.316 3 C 0.128 3.872 4 C -0.206 4.206 5 C -0.079 4.079 6 C -0.139 4.139 7 C -0.020 4.020 8 C 0.014 3.986 9 C -0.121 4.121 10 C -0.213 4.213 11 C 0.564 3.436 12 O -0.487 6.487 13 N -1.058 6.058 14 S 2.557 3.443 15 O -0.971 6.971 16 O -0.953 6.953 17 C -0.405 4.405 18 C -0.533 4.533 19 H 0.071 0.929 20 C 0.077 3.923 21 N -0.877 5.877 22 Si 0.907 3.093 23 H -0.266 1.266 24 H -0.277 1.277 25 H -0.278 1.278 26 C -0.131 4.131 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.100 0.900 30 H 0.128 0.872 31 H 0.128 0.872 32 H 0.129 0.871 33 H 0.058 0.942 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.135 0.865 37 H 0.424 0.576 38 H 0.099 0.901 39 H 0.084 0.916 40 H 0.268 0.732 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.060 4.104 4.747 25.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.230 6.230 3 C 0.083 3.917 4 C -0.225 4.225 5 C -0.097 4.097 6 C -0.158 4.158 7 C -0.021 4.021 8 C 0.013 3.987 9 C -0.177 4.177 10 C -0.236 4.236 11 C 0.354 3.646 12 O -0.362 6.362 13 N -0.817 5.817 14 S 2.659 3.341 15 O -0.962 6.962 16 O -0.944 6.944 17 C -0.542 4.542 18 C -0.573 4.573 19 H 0.089 0.911 20 C -0.130 4.130 21 N -0.513 5.513 22 Si 0.732 3.268 23 H -0.190 1.190 24 H -0.203 1.203 25 H -0.204 1.204 26 C -0.150 4.150 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.119 0.881 30 H 0.146 0.854 31 H 0.146 0.854 32 H 0.147 0.853 33 H 0.077 0.923 34 H 0.115 0.885 35 H 0.107 0.893 36 H 0.153 0.847 37 H 0.258 0.742 38 H 0.117 0.883 39 H 0.102 0.898 40 H 0.078 0.922 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -24.016 4.104 5.465 24.969 hybrid contribution -0.046 -0.332 -0.732 0.805 sum -24.062 3.772 4.733 24.812 Atomic orbital electron populations 1.23069 0.78292 1.04082 1.01318 1.86107 1.21439 1.26739 1.88681 1.18860 0.92059 0.84306 0.96494 1.21334 1.00081 0.92378 1.08696 1.20854 0.94393 0.97020 0.97466 1.21255 0.93575 0.97694 1.03247 1.18684 0.91865 0.92751 0.98766 1.21160 0.91346 0.91182 0.95061 1.21140 0.99042 1.03523 0.94015 1.22766 0.92874 1.06879 1.01040 1.18117 0.89081 0.77328 0.80081 1.91009 1.68867 1.39950 1.36337 1.55360 1.31106 1.60700 1.34494 1.07000 0.71453 0.81357 0.74270 1.93515 1.80676 1.70280 1.51704 1.93523 1.78584 1.82307 1.39937 1.27610 1.06507 1.12702 1.07339 1.20330 0.87251 0.95450 1.54238 0.91107 1.24923 0.99368 0.95165 0.93533 1.69965 1.35592 0.99266 1.46474 0.86288 0.83524 0.78903 0.78039 1.18971 1.20293 1.20359 1.20496 0.91408 0.97893 1.05172 0.92624 0.92602 0.88134 0.85431 0.85422 0.85267 0.92321 0.88450 0.89327 0.84687 0.74198 0.88304 0.89764 0.92235 0.84497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -3.02 10.49 -19.47 -0.20 -3.22 16 3 C 0.13 1.26 6.68 -39.28 -0.26 1.00 16 4 C -0.21 -1.65 9.04 -39.32 -0.36 -2.01 16 5 C -0.08 -0.61 10.02 -39.68 -0.40 -1.00 16 6 C -0.14 -1.24 9.72 -39.10 -0.38 -1.62 16 7 C -0.02 -0.21 5.23 -105.08 -0.55 -0.76 16 8 C 0.01 0.17 5.48 -102.20 -0.56 -0.39 16 9 C -0.12 -1.54 8.32 36.00 0.30 -1.24 16 10 C -0.21 -2.64 9.63 -37.50 -0.36 -3.00 16 11 C 0.56 9.33 7.41 -12.96 -0.10 9.23 16 12 O -0.49 -9.74 11.34 -11.92 -0.14 -9.88 16 13 N -1.06 -17.12 5.60 30.20 0.17 -16.95 16 14 S 2.56 55.62 5.03 -107.50 -0.54 55.08 16 15 O -0.97 -22.36 18.08 -57.54 -1.04 -23.40 16 16 O -0.95 -23.68 17.04 -64.79 -1.10 -24.79 16 17 C -0.40 -10.12 5.64 36.01 0.20 -9.92 16 18 C -0.53 -15.03 9.13 -34.44 -0.31 -15.35 16 19 H 0.07 1.95 7.71 -52.49 -0.40 1.55 16 20 C 0.08 2.15 5.46 -17.82 -0.10 2.05 16 21 N -0.88 -25.25 13.29 55.43 0.74 -24.51 16 22 Si 0.91 21.32 29.54 -169.99 -5.02 16.30 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 C -0.13 -1.41 9.72 -38.95 -0.38 -1.78 16 27 H 0.06 0.23 7.67 -51.93 -0.40 -0.17 16 28 H 0.06 0.24 7.64 -51.93 -0.40 -0.16 16 29 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.13 0.72 6.28 -52.48 -0.33 0.39 16 31 H 0.13 0.66 8.06 -52.48 -0.42 0.24 16 32 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 33 H 0.06 0.62 7.99 -51.92 -0.42 0.21 16 34 H 0.10 1.40 7.12 -51.93 -0.37 1.03 16 35 H 0.09 1.22 7.43 -51.93 -0.39 0.84 16 36 H 0.14 1.26 8.06 -52.48 -0.42 0.84 16 37 H 0.42 5.01 8.77 -34.47 -0.30 4.71 16 38 H 0.10 2.58 7.19 -51.92 -0.37 2.20 16 39 H 0.08 2.04 8.14 -51.92 -0.42 1.62 16 40 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 41 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 367.64 15.07 5.54 5.54 Total: -1.00 -36.61 367.64 -8.90 -45.51 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -5.05 Total: 3.98 kcal Atomic # 6 Polarization: -21.40 SS G_CDS: -2.26 Total: -23.66 kcal Atomic # 7 Polarization: -42.37 SS G_CDS: 0.91 Total: -41.46 kcal Atomic # 8 Polarization: -58.81 SS G_CDS: -2.48 Total: -61.29 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: 55.62 SS G_CDS: -0.54 Total: 55.08 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.61 -8.90 -45.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835412015.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.765 kcal (2) G-P(sol) polarization free energy of solvation -36.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds