Wall clock time and date at job start Tue Mar 31 2020 23:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35913 * 116.99538 * 2 1 4 4 C 1.38898 * 119.97627 * 359.72640 * 3 2 1 5 5 C 1.38284 * 120.29079 * 179.76205 * 4 3 2 6 6 C 1.37931 * 120.23244 * 0.51326 * 5 4 3 7 7 C 1.39832 * 119.94226 * 359.74695 * 6 5 4 8 8 C 1.47210 * 120.14935 * 179.97438 * 7 6 5 9 9 C 1.50695 * 120.00412 * 115.01797 * 8 7 6 10 10 C 1.34807 * 119.99883 * 295.02533 * 8 7 6 11 11 C 1.46431 * 119.99898 * 185.63706 * 10 8 7 12 12 O 1.21691 * 120.00189 * 5.60163 * 11 10 8 13 13 N 1.34776 * 120.00037 * 185.61048 * 11 10 8 14 14 S 1.65600 * 120.00394 * 179.97438 * 13 11 10 15 15 O 1.42095 * 104.27891 * 181.07055 * 14 13 11 16 16 O 1.42096 * 104.27717 * 308.93179 * 14 13 11 17 17 C 1.81404 * 104.44656 * 64.99900 * 14 13 11 18 18 C 1.50700 * 109.46905 * 180.02562 * 17 14 13 19 19 H 1.07994 * 120.00009 * 359.97438 * 18 17 14 20 20 C 1.37878 * 119.99958 * 180.02562 * 18 17 14 21 21 N 1.31516 * 120.00038 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00111 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47161 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47177 * 119.99888 * 22 20 18 25 25 H 1.48503 * 109.47047 * 239.99582 * 22 20 18 26 26 C 1.38387 * 119.96706 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.46880 * 299.99810 * 1 2 3 28 28 H 1.08995 * 109.47369 * 59.99603 * 1 2 3 29 29 H 1.08998 * 109.46806 * 179.97438 * 1 2 3 30 30 H 1.08005 * 119.84863 * 0.02562 * 4 3 2 31 31 H 1.08005 * 119.88177 * 180.25745 * 5 4 3 32 32 H 1.08009 * 120.03277 * 179.76180 * 6 5 4 33 33 H 1.09009 * 109.46854 * 354.81122 * 9 8 7 34 34 H 1.09003 * 109.47443 * 114.80319 * 9 8 7 35 35 H 1.08995 * 109.47998 * 234.81018 * 9 8 7 36 36 H 1.08003 * 119.99951 * 5.62181 * 10 8 7 37 37 H 0.97008 * 119.99983 * 359.97438 * 13 11 10 38 38 H 1.09004 * 109.46960 * 300.00148 * 17 14 13 39 39 H 1.08998 * 109.47131 * 60.00037 * 17 14 13 40 40 H 0.96995 * 120.00469 * 180.02562 * 21 20 18 41 41 H 1.07991 * 120.11683 * 359.95507 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2889 2.3756 -0.0057 5 6 1.9098 3.6112 -0.0008 6 6 3.2864 3.6966 -0.0008 7 6 4.0581 2.5305 -0.0005 8 6 5.5277 2.6165 -0.0011 9 6 6.3126 2.1101 1.1815 10 6 6.1714 3.1483 -1.0595 11 6 7.6344 3.1220 -1.1155 12 8 8.2656 2.5315 -0.2589 13 7 8.2819 3.7520 -2.1156 14 16 9.9364 3.7229 -2.1787 15 8 10.2570 4.4954 -3.3274 16 8 10.3439 4.1354 -0.8814 17 6 10.3483 1.9772 -2.4502 18 6 11.8452 1.8203 -2.5258 19 1 12.4847 2.6842 -2.4215 20 6 12.3983 0.5737 -2.7293 21 7 11.6195 -0.4783 -2.8569 22 14 14.2536 0.3792 -2.8238 23 1 14.8998 1.7052 -2.6517 24 1 14.7106 -0.5378 -1.7489 25 1 14.6256 -0.1843 -4.1465 26 6 3.4280 1.2828 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2105 2.3157 -0.0098 31 1 1.3146 4.5125 -0.0011 32 1 3.7680 4.6634 -0.0009 33 1 5.6249 1.8046 1.9701 34 1 6.9184 1.2566 0.8770 35 1 6.9622 2.9027 1.5528 36 1 5.6080 3.5934 -1.8662 37 1 7.7787 4.2226 -2.7986 38 1 9.9620 1.3801 -1.6242 39 1 9.8995 1.6390 -3.3841 40 1 12.0084 -1.3553 -2.9997 41 1 4.0175 0.3780 -0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835412015.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:34 Heat of formation + Delta-G solvation = -136.728700 kcal Electronic energy + Delta-G solvation = -26260.450046 eV Core-core repulsion = 22232.238284 eV Total energy + Delta-G solvation = -4028.211762 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.39019 -40.93252 -38.72976 -38.07261 -37.02903 -35.83076 -35.49834 -35.35499 -31.80705 -31.09811 -30.65490 -29.00780 -28.08350 -25.65953 -24.98416 -23.32469 -22.87194 -20.96164 -20.40506 -19.23764 -18.64879 -18.43941 -17.97114 -17.48129 -17.17179 -16.89296 -16.63910 -16.59830 -16.26135 -16.00062 -15.71322 -15.48517 -14.84721 -14.57450 -14.49125 -14.21003 -14.06095 -13.76700 -13.61755 -13.47155 -13.28241 -13.17599 -13.07253 -12.87046 -12.79775 -12.76046 -12.61170 -12.56070 -11.99127 -11.95600 -11.85043 -11.79748 -11.13620 -11.02441 -10.79849 -10.48565 -9.75221 -9.19914 -8.42924 -6.61874 -0.70965 -0.22797 0.37570 0.46341 1.36744 1.37848 1.52340 1.65344 1.85419 2.29696 2.36951 2.71088 2.79678 2.91429 3.19604 3.42004 3.76922 3.86108 3.92850 4.09701 4.16933 4.25672 4.32970 4.42189 4.49314 4.51482 4.59883 4.66252 4.75878 4.76391 4.77441 4.92905 5.00649 5.17067 5.29185 5.30348 5.33975 5.43837 5.53300 5.68569 5.74957 5.86590 6.44162 6.47774 6.57078 7.09735 8.70310 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.017510 B = 0.002476 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.672738 B =11306.832778 C =12300.001880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.341 6.341 3 C 0.115 3.885 4 C -0.200 4.200 5 C -0.075 4.075 6 C -0.140 4.140 7 C -0.033 4.033 8 C 0.030 3.970 9 C -0.123 4.123 10 C -0.216 4.216 11 C 0.558 3.442 12 O -0.528 6.528 13 N -1.040 6.040 14 S 2.604 3.396 15 O -0.981 6.981 16 O -0.984 6.984 17 C -0.422 4.422 18 C -0.566 4.566 19 H 0.068 0.932 20 C 0.024 3.976 21 N -0.909 5.909 22 Si 0.968 3.032 23 H -0.261 1.261 24 H -0.269 1.269 25 H -0.263 1.263 26 C -0.152 4.152 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.114 0.886 30 H 0.154 0.846 31 H 0.160 0.840 32 H 0.145 0.855 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.174 0.826 37 H 0.446 0.554 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.274 0.726 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.325 5.428 4.373 28.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.255 6.255 3 C 0.070 3.930 4 C -0.219 4.219 5 C -0.092 4.092 6 C -0.158 4.158 7 C -0.034 4.034 8 C 0.028 3.972 9 C -0.179 4.179 10 C -0.238 4.238 11 C 0.350 3.650 12 O -0.405 6.405 13 N -0.805 5.805 14 S 2.704 3.296 15 O -0.971 6.971 16 O -0.974 6.974 17 C -0.557 4.557 18 C -0.605 4.605 19 H 0.086 0.914 20 C -0.180 4.180 21 N -0.545 5.545 22 Si 0.790 3.210 23 H -0.185 1.185 24 H -0.194 1.194 25 H -0.188 1.188 26 C -0.170 4.170 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.132 0.868 30 H 0.171 0.829 31 H 0.177 0.823 32 H 0.163 0.837 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.191 0.809 37 H 0.286 0.714 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.083 0.917 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -26.294 5.427 5.056 27.320 hybrid contribution 0.450 -0.762 -0.556 1.045 sum -25.844 4.665 4.500 26.644 Atomic orbital electron populations 1.23356 0.76226 1.05522 1.02498 1.86076 1.23688 1.26998 1.88733 1.18998 0.91912 0.85214 0.96849 1.21673 1.01387 0.91767 1.07060 1.21237 0.94096 0.98054 0.95854 1.21486 0.94235 0.97541 1.02528 1.18558 0.90659 0.93470 1.00688 1.21250 0.92461 0.89384 0.94134 1.21087 0.99161 1.02315 0.95291 1.22780 0.90022 1.08339 1.02639 1.18861 0.90775 0.76246 0.79103 1.91007 1.69900 1.41695 1.37866 1.54793 1.29250 1.60978 1.35451 1.05285 0.72382 0.78875 0.73090 1.93493 1.81973 1.69575 1.52092 1.93481 1.80371 1.81994 1.41546 1.27672 1.05261 1.16254 1.06492 1.20761 0.89058 0.95907 1.54760 0.91384 1.25890 1.04387 0.94812 0.92872 1.70049 1.37675 0.99842 1.46957 0.85348 0.77624 0.79157 0.78845 1.18478 1.19382 1.18808 1.20503 0.92268 0.97646 1.06620 0.91328 0.91386 0.86790 0.82856 0.82274 0.83705 0.90481 0.90640 0.90610 0.80906 0.71427 0.90263 0.89795 0.91685 0.85836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 113.37 1.11 1.27 16 2 O -0.34 -6.19 10.49 -92.57 -0.97 -7.16 16 3 C 0.12 2.12 6.68 22.46 0.15 2.27 16 4 C -0.20 -2.59 9.04 22.44 0.20 -2.39 16 5 C -0.07 -0.86 10.02 22.21 0.22 -0.64 16 6 C -0.14 -2.07 9.72 22.58 0.22 -1.85 16 7 C -0.03 -0.66 5.23 -20.16 -0.11 -0.76 16 8 C 0.03 0.69 5.48 -18.29 -0.10 0.59 16 9 C -0.12 -3.23 8.32 71.23 0.59 -2.64 16 10 C -0.22 -5.08 9.63 23.62 0.23 -4.86 16 11 C 0.56 18.48 7.41 86.38 0.64 19.12 16 12 O -0.53 -21.97 11.34 12.05 0.14 -21.83 16 13 N -1.04 -33.09 5.60 -176.58 -0.99 -34.08 16 14 S 2.60 114.46 5.03 -56.49 -0.28 114.18 16 15 O -0.98 -44.72 18.08 -127.65 -2.31 -47.02 16 16 O -0.98 -49.70 17.04 -120.72 -2.06 -51.76 16 17 C -0.42 -21.90 5.64 71.24 0.40 -21.50 16 18 C -0.57 -32.77 9.13 25.60 0.23 -32.53 16 19 H 0.07 3.85 7.71 -2.91 -0.02 3.82 16 20 C 0.02 1.35 5.46 84.65 0.46 1.81 16 21 N -0.91 -53.47 13.29 21.45 0.28 -53.19 16 22 Si 0.97 43.87 29.54 68.60 2.03 45.89 16 23 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 24 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 25 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 26 C -0.15 -3.21 9.72 22.68 0.22 -2.99 16 27 H 0.07 0.40 7.67 -2.39 -0.02 0.38 16 28 H 0.07 0.41 7.64 -2.39 -0.02 0.39 16 29 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.15 1.12 6.28 -2.91 -0.02 1.10 16 31 H 0.16 0.84 8.06 -2.91 -0.02 0.82 16 32 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 33 H 0.08 1.68 7.99 -2.38 -0.02 1.66 16 34 H 0.08 2.34 7.12 -2.39 -0.02 2.32 16 35 H 0.08 2.19 7.43 -2.39 -0.02 2.18 16 36 H 0.17 2.69 8.06 -2.91 -0.02 2.67 16 37 H 0.45 9.74 8.77 -96.74 -0.85 8.89 16 38 H 0.08 4.37 7.19 -2.39 -0.02 4.35 16 39 H 0.08 4.24 8.14 -2.39 -0.02 4.22 16 40 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 41 H 0.12 2.80 8.06 -2.92 -0.02 2.77 16 Total: -1.00 -81.03 367.64 0.54 -80.49 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: 0.22 Total: 19.57 kcal Atomic # 6 Polarization: -49.58 SS G_CDS: 4.48 Total: -45.10 kcal Atomic # 7 Polarization: -86.56 SS G_CDS: -0.70 Total: -87.26 kcal Atomic # 8 Polarization: -122.58 SS G_CDS: -5.20 Total: -127.78 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Atomic # 16 Polarization: 114.46 SS G_CDS: -0.28 Total: 114.18 kcal Total: -81.03 0.54 -80.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835412015.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.235 kcal (2) G-P(sol) polarization free energy of solvation -81.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds