Wall clock time and date at job start Tue Mar 31 2020 22:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 120.00161 * 2 1 4 4 H 1.48493 * 109.47369 * 240.00377 * 3 2 1 5 5 H 1.48499 * 109.46934 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47067 * 119.99969 * 3 2 1 7 7 C 1.37884 * 120.00027 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99772 * 179.97438 * 7 2 1 9 9 C 1.50692 * 119.99734 * 0.02562 * 7 2 1 10 10 S 1.81405 * 109.46881 * 180.02562 * 9 7 2 11 11 O 1.42102 * 110.54418 * 68.37387 * 10 9 7 12 12 O 1.42101 * 110.54131 * 291.61885 * 10 9 7 13 13 N 1.65607 * 104.44929 * 179.97438 * 10 9 7 14 14 C 1.34777 * 119.99979 * 64.99631 * 13 10 9 15 15 O 1.21580 * 119.99972 * 0.02562 * 14 13 10 16 16 C 1.47605 * 119.99768 * 179.97438 * 14 13 10 17 17 C 1.39730 * 120.08341 * 180.02562 * 16 14 13 18 18 C 1.37709 * 119.90640 * 180.02562 * 17 16 14 19 19 C 1.38990 * 120.08891 * 0.02562 * 18 17 16 20 20 O 1.35715 * 119.91102 * 179.97438 * 19 18 17 21 21 C 1.42901 * 116.99916 * 179.97438 * 20 19 18 22 22 C 1.52998 * 109.47046 * 180.02562 * 21 20 19 23 23 C 1.52999 * 117.49602 * 243.74591 * 22 21 20 24 24 C 1.52993 * 117.49920 * 175.08804 * 22 21 20 25 25 C 1.38998 * 120.17645 * 0.25691 * 19 18 17 26 26 C 1.37696 * 120.08887 * 359.44297 * 25 19 18 27 27 H 0.97000 * 119.99797 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.47799 * 59.99702 * 9 7 2 29 29 H 1.09005 * 109.47032 * 299.99709 * 9 7 2 30 30 H 0.97005 * 119.99798 * 245.00084 * 13 10 9 31 31 H 1.07996 * 120.04882 * 359.97438 * 17 16 14 32 32 H 1.07997 * 119.94984 * 179.97438 * 18 17 16 33 33 H 1.08999 * 109.47144 * 300.00258 * 21 20 19 34 34 H 1.08998 * 109.47043 * 59.99856 * 21 20 19 35 35 H 1.08999 * 115.55166 * 29.41592 * 22 21 20 36 36 H 1.08999 * 117.49990 * 0.02562 * 23 22 21 37 37 H 1.09009 * 117.49649 * 145.01662 * 23 22 21 38 38 H 1.08997 * 117.50294 * 214.97692 * 24 22 21 39 39 H 1.09001 * 117.49927 * 0.02562 * 24 22 21 40 40 H 1.08000 * 119.95493 * 179.72531 * 25 19 18 41 41 H 1.08002 * 120.04922 * 180.28204 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 16 2.4299 -3.8779 -0.0014 11 8 3.1258 -3.9388 1.2361 12 8 3.1275 -3.9378 -1.2380 13 7 1.4795 -5.2341 -0.0020 14 6 0.6892 -5.5027 -1.0602 15 8 0.6744 -4.7496 -2.0146 16 6 -0.1574 -6.7118 -1.0610 17 6 -0.9770 -6.9923 -2.1574 18 6 -1.7658 -8.1210 -2.1540 19 6 -1.7478 -8.9805 -1.0618 20 8 -2.5271 -10.0916 -1.0620 21 6 -2.4595 -10.9316 0.0920 22 6 -3.3992 -12.1252 -0.0903 23 6 -4.5764 -12.2519 0.8788 24 6 -3.3854 -13.2068 0.9917 25 6 -0.9383 -8.7019 0.0332 26 6 -0.1420 -7.5785 0.0350 27 1 -0.4850 0.8401 0.0004 28 1 0.6247 -2.5563 -0.8919 29 1 0.6241 -2.5574 0.8881 30 1 1.4916 -5.8352 0.7593 31 1 -0.9925 -6.3243 -3.0059 32 1 -2.3999 -8.3383 -3.0008 33 1 -1.4383 -11.2901 0.2213 34 1 -2.7594 -10.3638 0.9728 35 1 -3.5583 -12.4453 -1.1200 36 1 -4.6816 -11.4847 1.6459 37 1 -5.5099 -12.6557 0.4867 38 1 -3.5358 -14.2385 0.6739 39 1 -2.7072 -13.0679 1.8336 40 1 -0.9304 -9.3698 0.8819 41 1 0.4902 -7.3651 0.8842 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835412775.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:27 Heat of formation + Delta-G solvation = -124.805887 kcal Electronic energy + Delta-G solvation = -26008.436232 eV Core-core repulsion = 21980.741482 eV Total energy + Delta-G solvation = -4027.694750 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.72058 -40.80473 -38.72791 -38.10214 -37.46934 -37.06986 -35.72278 -35.42611 -32.21733 -31.45013 -31.09610 -28.62371 -25.68288 -25.10951 -23.97951 -23.26055 -22.36658 -21.50001 -20.84750 -19.71408 -19.25038 -18.93009 -18.34891 -17.54918 -17.33819 -16.89879 -16.72041 -16.39937 -16.27634 -15.99777 -15.92516 -15.53028 -14.92733 -14.60753 -14.47524 -14.27248 -14.14232 -13.77894 -13.64398 -13.60372 -13.49786 -13.21771 -13.10993 -12.72641 -12.56241 -12.49466 -12.43584 -12.27824 -12.07563 -11.87696 -11.84915 -11.48295 -11.37436 -11.08362 -10.91688 -10.79033 -10.17226 -9.39459 -8.42843 -6.62464 -0.76446 -0.32453 0.25983 1.37129 1.40157 1.41949 1.49722 1.59779 1.98089 2.29867 2.65566 2.77208 2.87555 2.91160 3.14375 3.39288 3.62235 3.72381 3.84573 3.91542 3.92621 4.04455 4.11560 4.23202 4.28935 4.43840 4.54637 4.57994 4.64567 4.74990 4.80056 4.89598 4.98303 5.02515 5.13558 5.21355 5.23446 5.24658 5.28424 5.55145 5.67062 5.74791 6.29798 6.43824 6.48673 7.09151 8.69892 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.023025 B = 0.002160 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.793784 B =12960.694612 C =13186.897322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.024 3.976 3 Si 0.969 3.031 4 H -0.265 1.265 5 H -0.269 1.269 6 H -0.257 1.257 7 C -0.570 4.570 8 H 0.069 0.931 9 C -0.420 4.420 10 S 2.601 3.399 11 O -0.975 6.975 12 O -0.984 6.984 13 N -1.040 6.040 14 C 0.579 3.421 15 O -0.534 6.534 16 C -0.199 4.199 17 C -0.023 4.023 18 C -0.165 4.165 19 C 0.164 3.836 20 O -0.317 6.317 21 C 0.081 3.919 22 C -0.172 4.172 23 C -0.181 4.181 24 C -0.159 4.159 25 C -0.212 4.212 26 C -0.031 4.031 27 H 0.275 0.725 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.443 0.557 31 H 0.139 0.861 32 H 0.153 0.847 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.109 0.891 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.169 0.831 41 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.324 -26.958 4.016 28.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.790 3.210 4 H -0.190 1.190 5 H -0.193 1.193 6 H -0.181 1.181 7 C -0.609 4.609 8 H 0.088 0.912 9 C -0.555 4.555 10 S 2.701 3.299 11 O -0.966 6.966 12 O -0.974 6.974 13 N -0.806 5.806 14 C 0.370 3.630 15 O -0.409 6.409 16 C -0.205 4.205 17 C -0.042 4.042 18 C -0.183 4.183 19 C 0.117 3.883 20 O -0.230 6.230 21 C 0.006 3.994 22 C -0.190 4.190 23 C -0.218 4.218 24 C -0.196 4.196 25 C -0.231 4.231 26 C -0.050 4.050 27 H 0.084 0.916 28 H 0.096 0.904 29 H 0.105 0.895 30 H 0.283 0.717 31 H 0.156 0.844 32 H 0.171 0.829 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.127 0.873 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.126 0.874 39 H 0.127 0.873 40 H 0.186 0.814 41 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -8.679 -26.471 3.196 28.040 hybrid contribution -0.261 0.944 0.272 1.016 sum -8.940 -25.527 3.469 27.269 Atomic orbital electron populations 1.70040 1.07650 1.29047 1.47663 1.25909 0.96032 1.03332 0.92699 0.85444 0.78654 0.76970 0.79916 1.18957 1.19318 1.18111 1.20711 0.93175 0.90355 1.56615 0.91247 1.27651 1.10707 1.10688 1.06459 1.05416 0.76043 0.75427 0.72980 1.93500 1.71352 1.86306 1.45419 1.93488 1.71603 1.85843 1.46443 1.54851 1.55567 1.42691 1.27474 1.18677 0.77893 0.86144 0.80269 1.90960 1.65439 1.50219 1.34323 1.19620 1.04196 0.96970 0.99688 1.21182 0.91063 0.95247 0.96664 1.20525 1.03693 0.94565 0.99561 1.19416 0.88916 0.86038 0.93942 1.86034 1.60794 1.32764 1.43397 1.22656 1.00658 0.89620 0.86422 1.22109 1.01318 0.97774 0.97846 1.23218 0.93606 1.03173 1.01825 1.23111 1.01093 0.95720 0.99640 1.21470 1.00685 1.00824 1.00081 1.21413 0.95720 0.91634 0.96198 0.91632 0.90382 0.89496 0.71651 0.84364 0.82883 0.89751 0.90232 0.87254 0.88090 0.88144 0.87389 0.87343 0.81400 0.82223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.25 13.29 21.45 0.28 -52.96 16 2 C 0.02 1.35 5.46 84.66 0.46 1.81 16 3 Si 0.97 43.58 29.54 68.60 2.03 45.60 16 4 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 5 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 6 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 7 C -0.57 -32.91 9.13 25.60 0.23 -32.68 16 8 H 0.07 3.88 7.71 -2.91 -0.02 3.86 16 9 C -0.42 -21.82 5.64 71.23 0.40 -21.42 16 10 S 2.60 114.81 5.03 -56.49 -0.28 114.53 16 11 O -0.98 -43.82 18.08 -127.65 -2.31 -46.13 16 12 O -0.98 -50.33 17.04 -120.72 -2.06 -52.39 16 13 N -1.04 -33.86 5.55 -175.77 -0.98 -34.84 16 14 C 0.58 20.27 7.50 86.72 0.65 20.93 16 15 O -0.53 -23.67 14.44 12.40 0.18 -23.49 16 16 C -0.20 -5.23 5.87 -20.08 -0.12 -5.35 16 17 C -0.02 -0.56 9.58 22.51 0.22 -0.34 16 18 C -0.16 -3.28 9.97 22.32 0.22 -3.06 16 19 C 0.16 2.89 6.70 22.63 0.15 3.04 16 20 O -0.32 -5.10 10.12 -90.36 -0.91 -6.01 16 21 C 0.08 0.80 5.02 71.98 0.36 1.16 16 22 C -0.17 -1.60 6.05 -10.80 -0.07 -1.66 16 23 C -0.18 -1.40 10.18 30.62 0.31 -1.09 16 24 C -0.16 -0.95 10.25 30.61 0.31 -0.63 16 25 C -0.21 -3.13 9.01 22.32 0.20 -2.93 16 26 C -0.03 -0.57 9.53 22.50 0.21 -0.35 16 27 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 28 H 0.08 4.34 7.19 -2.39 -0.02 4.32 16 29 H 0.09 4.35 8.14 -2.39 -0.02 4.33 16 30 H 0.44 9.82 6.81 -96.74 -0.66 9.16 16 31 H 0.14 3.59 7.64 -2.91 -0.02 3.57 16 32 H 0.15 2.52 8.06 -2.91 -0.02 2.49 16 33 H 0.08 0.60 7.66 -2.39 -0.02 0.59 16 34 H 0.08 0.61 7.37 -2.39 -0.02 0.59 16 35 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.10 0.71 8.03 -2.39 -0.02 0.69 16 37 H 0.10 0.72 8.14 -2.38 -0.02 0.70 16 38 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 40 H 0.17 1.32 6.28 -2.91 -0.02 1.30 16 41 H 0.16 1.90 6.39 -2.91 -0.02 1.89 16 Total: -1.00 -80.45 366.48 -0.08 -80.53 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: 0.42 Total: 17.75 kcal Atomic # 6 Polarization: -46.14 SS G_CDS: 3.56 Total: -42.58 kcal Atomic # 7 Polarization: -87.11 SS G_CDS: -0.69 Total: -87.80 kcal Atomic # 8 Polarization: -122.93 SS G_CDS: -5.10 Total: -128.03 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: 114.81 SS G_CDS: -0.28 Total: 114.53 kcal Total: -80.45 -0.08 -80.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835412775.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.276 kcal (2) G-P(sol) polarization free energy of solvation -80.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds