Wall clock time and date at job start Tue Mar 31 2020 22:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38402 * 119.82806 * 2 1 4 4 C 1.37885 * 120.17407 * 180.28065 * 3 2 1 5 5 C 1.39851 * 119.82281 * 359.43610 * 4 3 2 6 6 C 1.47168 * 120.17582 * 180.29957 * 5 4 3 7 7 O 1.21262 * 119.99476 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00520 * 180.02562 * 6 5 4 9 9 C 1.52998 * 109.47015 * 180.02562 * 8 6 5 10 10 C 1.50698 * 109.47012 * 180.02562 * 9 8 6 11 11 O 1.21282 * 120.00029 * 359.97438 * 10 9 8 12 12 N 1.34783 * 120.00205 * 180.02562 * 10 9 8 13 13 S 1.65596 * 119.99865 * 179.97438 * 12 10 9 14 14 O 1.42106 * 104.27511 * 181.07104 * 13 12 10 15 15 O 1.42104 * 104.27663 * 308.92114 * 13 12 10 16 16 C 1.81392 * 104.45427 * 64.99791 * 13 12 10 17 17 C 1.50698 * 109.47548 * 180.02562 * 16 13 12 18 18 H 1.08005 * 119.99965 * 359.97438 * 17 16 13 19 19 C 1.37878 * 120.00071 * 180.02562 * 17 16 13 20 20 N 1.31510 * 120.00210 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99882 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.47249 * 59.99253 * 21 19 17 23 23 H 1.48496 * 109.47245 * 179.97438 * 21 19 17 24 24 H 1.48508 * 109.46948 * 299.99552 * 21 19 17 25 25 C 1.39853 * 119.65985 * 0.28751 * 5 4 3 26 26 C 1.37892 * 119.82327 * 359.97438 * 25 5 4 27 27 H 1.08999 * 109.47370 * 270.27837 * 1 2 3 28 28 H 1.09002 * 109.46875 * 30.28498 * 1 2 3 29 29 H 1.09007 * 109.47167 * 150.27884 * 1 2 3 30 30 H 1.07998 * 119.91183 * 359.97438 * 3 2 1 31 31 H 1.08002 * 120.09199 * 179.72215 * 4 3 2 32 32 H 1.08994 * 109.47311 * 300.00700 * 8 6 5 33 33 H 1.09003 * 109.46942 * 60.00429 * 8 6 5 34 34 H 1.09002 * 109.47272 * 300.00076 * 9 8 6 35 35 H 1.08995 * 109.47284 * 59.99996 * 9 8 6 36 36 H 0.96998 * 119.99678 * 359.97438 * 12 10 9 37 37 H 1.09001 * 109.47040 * 299.99752 * 16 13 12 38 38 H 1.09002 * 109.47404 * 59.99647 * 16 13 12 39 39 H 0.96998 * 119.99799 * 180.02562 * 20 19 17 40 40 H 1.08001 * 120.09350 * 180.02562 * 25 5 4 41 41 H 1.07999 * 119.91308 * 180.02562 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.2007 0.0000 4 6 3.5742 1.2090 -0.0058 5 6 4.2770 0.0000 0.0002 6 6 5.7487 -0.0002 0.0007 7 8 6.3550 1.0500 -0.0037 8 6 6.5022 -1.3052 0.0066 9 6 8.0064 -1.0256 0.0065 10 6 8.7599 -2.3307 0.0118 11 8 8.1535 -3.3810 0.0157 12 7 10.1077 -2.3308 0.0131 13 16 10.9356 -3.7649 0.0196 14 8 12.3033 -3.3799 0.0452 15 8 10.3604 -4.4968 1.0933 16 6 10.5207 -4.5344 -1.5698 17 6 11.2225 -5.8631 -1.6832 18 1 11.8554 -6.2098 -0.8796 19 6 11.0576 -6.6357 -2.8132 20 7 10.2875 -6.2133 -3.7919 21 14 11.9283 -8.2824 -2.9540 22 1 11.4917 -9.1695 -1.8459 23 1 11.5885 -8.9124 -4.2551 24 1 13.3965 -8.0746 -2.8726 25 6 3.5742 -1.2091 0.0060 26 6 2.1953 -1.2008 0.0063 27 1 -0.3634 0.0050 1.0276 28 1 -0.3633 0.8874 -0.5183 29 1 -0.3634 -0.8925 -0.5095 30 1 1.6511 2.1335 -0.0004 31 1 4.1100 2.1467 -0.0104 32 1 6.2385 -1.8730 0.8988 33 1 6.2392 -1.8806 -0.8811 34 1 8.2704 -0.4577 -0.8856 35 1 8.2691 -0.4504 0.8943 36 1 10.5927 -1.4907 0.0104 37 1 9.4430 -4.6870 -1.6292 38 1 10.8408 -3.8833 -2.3833 39 1 10.1712 -6.7570 -4.5868 40 1 4.1099 -2.1469 0.0110 41 1 1.6511 -2.1336 0.0112 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835412838.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:42 Heat of formation + Delta-G solvation = -140.582008 kcal Electronic energy + Delta-G solvation = -25922.120747 eV Core-core repulsion = 21893.741893 eV Total energy + Delta-G solvation = -4028.378854 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.52454 -39.72273 -38.61797 -36.24883 -35.17855 -34.12532 -33.55384 -33.36262 -32.85394 -31.30169 -29.06992 -28.37809 -25.91262 -23.56030 -22.98497 -22.61798 -21.08139 -19.80315 -19.14939 -18.00300 -17.30301 -16.79730 -16.49515 -16.19582 -15.90037 -15.56945 -15.52239 -14.86718 -14.75494 -14.54283 -14.28395 -14.15747 -14.09825 -13.89683 -13.75954 -13.08890 -12.62923 -12.54861 -12.28618 -12.24874 -12.11969 -11.98611 -11.83302 -11.48453 -11.38322 -11.34085 -11.30140 -11.20189 -10.89520 -10.67219 -10.50087 -10.05990 -9.94781 -9.82010 -9.34726 -9.17552 -9.07491 -8.71278 -6.34143 -4.45314 0.33462 1.03024 1.03668 2.11882 2.36163 3.13475 3.23888 3.26149 3.30873 3.44693 3.70744 4.21804 4.33265 4.43778 4.45244 4.54461 4.62200 4.68834 4.82457 4.89823 4.98352 4.99647 5.12016 5.15901 5.17976 5.27053 5.29681 5.35834 5.47075 5.62843 5.63685 5.66052 5.76570 5.95696 6.05279 6.15837 6.53914 6.57100 6.74477 6.98504 7.26069 7.40542 7.70891 7.75334 8.55631 9.22046 10.77625 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.015939 B = 0.002323 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.269362 B =12051.040742 C =13229.722388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.056 4.056 3 C -0.137 4.137 4 C -0.057 4.057 5 C -0.176 4.176 6 C 0.401 3.599 7 O -0.456 6.456 8 C -0.158 4.158 9 C -0.134 4.134 10 C 0.533 3.467 11 O -0.490 6.490 12 N -1.061 6.061 13 S 2.553 3.447 14 O -0.969 6.969 15 O -0.953 6.953 16 C -0.404 4.404 17 C -0.535 4.535 18 H 0.070 0.930 19 C 0.078 3.922 20 N -0.878 5.878 21 Si 0.907 3.093 22 H -0.269 1.269 23 H -0.282 1.282 24 H -0.269 1.269 25 C -0.065 4.065 26 C -0.135 4.135 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.127 0.873 31 H 0.133 0.867 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.109 0.891 35 H 0.106 0.894 36 H 0.426 0.574 37 H 0.098 0.902 38 H 0.085 0.915 39 H 0.269 0.731 40 H 0.139 0.861 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.651 15.495 5.376 24.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.056 4.056 3 C -0.155 4.155 4 C -0.075 4.075 5 C -0.177 4.177 6 C 0.279 3.721 7 O -0.331 6.331 8 C -0.195 4.195 9 C -0.176 4.176 10 C 0.319 3.681 11 O -0.361 6.361 12 N -0.820 5.820 13 S 2.656 3.344 14 O -0.960 6.960 15 O -0.943 6.943 16 C -0.540 4.540 17 C -0.575 4.575 18 H 0.088 0.912 19 C -0.129 4.129 20 N -0.513 5.513 21 Si 0.732 3.268 22 H -0.194 1.194 23 H -0.207 1.207 24 H -0.194 1.194 25 C -0.083 4.083 26 C -0.152 4.152 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.145 0.855 31 H 0.151 0.849 32 H 0.130 0.870 33 H 0.132 0.868 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.260 0.740 37 H 0.116 0.884 38 H 0.103 0.897 39 H 0.079 0.921 40 H 0.156 0.844 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -17.323 14.979 5.964 23.664 hybrid contribution 0.329 -0.326 -0.743 0.875 sum -16.994 14.653 5.221 23.038 Atomic orbital electron populations 1.20894 0.90869 1.03228 1.02731 1.20245 0.96425 0.93239 0.95704 1.21026 0.93974 0.97826 1.02712 1.21412 0.94029 0.97828 0.94275 1.20484 0.94888 0.94413 1.07955 1.22478 0.88296 0.90540 0.70766 1.90519 1.71074 1.34976 1.36569 1.21871 0.93896 0.96938 1.06838 1.21579 0.94397 0.95226 1.06371 1.20504 0.81723 0.92343 0.73537 1.90908 1.67242 1.33188 1.44793 1.55484 1.16307 1.29424 1.80815 1.07117 0.73564 0.73120 0.80615 1.93523 1.32371 1.81262 1.88854 1.93527 1.77904 1.69863 1.53052 1.27594 1.08251 1.07152 1.11038 1.20249 1.30806 1.01242 1.05193 0.91185 1.24917 0.94550 0.98624 0.94819 1.69941 1.36189 1.38294 1.06910 0.86402 0.80200 0.82333 0.77842 1.19358 1.20675 1.19400 1.21600 0.94404 0.97702 0.94575 1.21083 0.94135 0.97899 1.02129 0.90665 0.91231 0.91081 0.85505 0.84901 0.86969 0.86782 0.87304 0.87543 0.74023 0.88368 0.89719 0.92092 0.84368 0.85223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.57 10.00 36.00 0.36 -0.21 16 2 C -0.06 -0.40 5.89 -104.50 -0.62 -1.02 16 3 C -0.14 -1.04 9.68 -39.65 -0.38 -1.42 16 4 C -0.06 -0.52 9.60 -39.11 -0.38 -0.89 16 5 C -0.18 -1.71 5.87 -105.06 -0.62 -2.33 16 6 C 0.40 4.22 7.12 -30.69 -0.22 4.00 16 7 O -0.46 -5.76 15.98 5.57 0.09 -5.67 16 8 C -0.16 -1.61 3.60 -27.88 -0.10 -1.71 16 9 C -0.13 -1.46 4.99 -27.88 -0.14 -1.60 16 10 C 0.53 8.19 7.57 -10.98 -0.08 8.11 16 11 O -0.49 -9.40 14.08 -11.58 -0.16 -9.57 16 12 N -1.06 -16.45 5.60 31.22 0.17 -16.28 16 13 S 2.55 54.59 5.03 -107.50 -0.54 54.05 16 14 O -0.97 -22.07 18.08 -57.54 -1.04 -23.11 16 15 O -0.95 -23.40 17.04 -64.79 -1.10 -24.50 16 16 C -0.40 -9.91 5.64 36.00 0.20 -9.71 16 17 C -0.54 -14.92 9.13 -34.44 -0.31 -15.24 16 18 H 0.07 1.90 7.71 -52.48 -0.40 1.50 16 19 C 0.08 2.15 5.46 -17.82 -0.10 2.05 16 20 N -0.88 -24.92 13.29 55.43 0.74 -24.18 16 21 Si 0.91 21.05 29.54 -169.99 -5.02 16.03 16 22 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 25 C -0.06 -0.55 9.47 -39.10 -0.37 -0.92 16 26 C -0.13 -1.02 9.68 -39.64 -0.38 -1.41 16 27 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.27 8.08 -51.93 -0.42 -0.15 16 29 H 0.07 0.29 8.08 -51.92 -0.42 -0.13 16 30 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 31 H 0.13 1.15 7.65 -52.49 -0.40 0.75 16 32 H 0.11 1.08 8.04 -51.93 -0.42 0.66 16 33 H 0.11 1.13 8.05 -51.93 -0.42 0.71 16 34 H 0.11 1.03 8.10 -51.93 -0.42 0.61 16 35 H 0.11 0.99 8.10 -51.93 -0.42 0.57 16 36 H 0.43 4.79 8.79 -34.47 -0.30 4.48 16 37 H 0.10 2.50 7.19 -51.92 -0.37 2.13 16 38 H 0.08 2.01 8.14 -51.92 -0.42 1.59 16 39 H 0.27 7.14 8.31 -40.82 -0.34 6.81 16 40 H 0.14 1.01 7.05 -52.49 -0.37 0.64 16 41 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 LS Contribution 371.20 15.07 5.59 5.59 Total: -1.00 -37.05 371.20 -9.60 -46.65 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -5.19 Total: 3.26 kcal Atomic # 6 Polarization: -19.15 SS G_CDS: -3.13 Total: -22.28 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: 0.91 Total: -40.46 kcal Atomic # 8 Polarization: -60.63 SS G_CDS: -2.22 Total: -62.85 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: 54.59 SS G_CDS: -0.54 Total: 54.05 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -37.05 -9.60 -46.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835412838.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.929 kcal (2) G-P(sol) polarization free energy of solvation -37.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds