Wall clock time and date at job start Tue Mar 31 2020 22:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38402 * 119.82806 * 2 1 4 4 C 1.37885 * 120.17407 * 180.28065 * 3 2 1 5 5 C 1.39851 * 119.82281 * 359.43610 * 4 3 2 6 6 C 1.47168 * 120.17582 * 180.29957 * 5 4 3 7 7 O 1.21262 * 119.99476 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00520 * 180.02562 * 6 5 4 9 9 C 1.52998 * 109.47015 * 180.02562 * 8 6 5 10 10 C 1.50698 * 109.47012 * 180.02562 * 9 8 6 11 11 O 1.21282 * 120.00029 * 359.97438 * 10 9 8 12 12 N 1.34783 * 120.00205 * 180.02562 * 10 9 8 13 13 S 1.65596 * 119.99865 * 179.97438 * 12 10 9 14 14 O 1.42106 * 104.27511 * 181.07104 * 13 12 10 15 15 O 1.42104 * 104.27663 * 308.92114 * 13 12 10 16 16 C 1.81392 * 104.45427 * 64.99791 * 13 12 10 17 17 C 1.50698 * 109.47548 * 180.02562 * 16 13 12 18 18 H 1.08005 * 119.99965 * 359.97438 * 17 16 13 19 19 C 1.37878 * 120.00071 * 180.02562 * 17 16 13 20 20 N 1.31510 * 120.00210 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99882 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.47249 * 59.99253 * 21 19 17 23 23 H 1.48496 * 109.47245 * 179.97438 * 21 19 17 24 24 H 1.48508 * 109.46948 * 299.99552 * 21 19 17 25 25 C 1.39853 * 119.65985 * 0.28751 * 5 4 3 26 26 C 1.37892 * 119.82327 * 359.97438 * 25 5 4 27 27 H 1.08999 * 109.47370 * 270.27837 * 1 2 3 28 28 H 1.09002 * 109.46875 * 30.28498 * 1 2 3 29 29 H 1.09007 * 109.47167 * 150.27884 * 1 2 3 30 30 H 1.07998 * 119.91183 * 359.97438 * 3 2 1 31 31 H 1.08002 * 120.09199 * 179.72215 * 4 3 2 32 32 H 1.08994 * 109.47311 * 300.00700 * 8 6 5 33 33 H 1.09003 * 109.46942 * 60.00429 * 8 6 5 34 34 H 1.09002 * 109.47272 * 300.00076 * 9 8 6 35 35 H 1.08995 * 109.47284 * 59.99996 * 9 8 6 36 36 H 0.96998 * 119.99678 * 359.97438 * 12 10 9 37 37 H 1.09001 * 109.47040 * 299.99752 * 16 13 12 38 38 H 1.09002 * 109.47404 * 59.99647 * 16 13 12 39 39 H 0.96998 * 119.99799 * 180.02562 * 20 19 17 40 40 H 1.08001 * 120.09350 * 180.02562 * 25 5 4 41 41 H 1.07999 * 119.91308 * 180.02562 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.2007 0.0000 4 6 3.5742 1.2090 -0.0058 5 6 4.2770 0.0000 0.0002 6 6 5.7487 -0.0002 0.0007 7 8 6.3550 1.0500 -0.0037 8 6 6.5022 -1.3052 0.0066 9 6 8.0064 -1.0256 0.0065 10 6 8.7599 -2.3307 0.0118 11 8 8.1535 -3.3810 0.0157 12 7 10.1077 -2.3308 0.0131 13 16 10.9356 -3.7649 0.0196 14 8 12.3033 -3.3799 0.0452 15 8 10.3604 -4.4968 1.0933 16 6 10.5207 -4.5344 -1.5698 17 6 11.2225 -5.8631 -1.6832 18 1 11.8554 -6.2098 -0.8796 19 6 11.0576 -6.6357 -2.8132 20 7 10.2875 -6.2133 -3.7919 21 14 11.9283 -8.2824 -2.9540 22 1 11.4917 -9.1695 -1.8459 23 1 11.5885 -8.9124 -4.2551 24 1 13.3965 -8.0746 -2.8726 25 6 3.5742 -1.2091 0.0060 26 6 2.1953 -1.2008 0.0063 27 1 -0.3634 0.0050 1.0276 28 1 -0.3633 0.8874 -0.5183 29 1 -0.3634 -0.8925 -0.5095 30 1 1.6511 2.1335 -0.0004 31 1 4.1100 2.1467 -0.0104 32 1 6.2385 -1.8730 0.8988 33 1 6.2392 -1.8806 -0.8811 34 1 8.2704 -0.4577 -0.8856 35 1 8.2691 -0.4504 0.8943 36 1 10.5927 -1.4907 0.0104 37 1 9.4430 -4.6870 -1.6292 38 1 10.8408 -3.8833 -2.3833 39 1 10.1712 -6.7570 -4.5868 40 1 4.1099 -2.1469 0.0110 41 1 1.6511 -2.1336 0.0112 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835412838.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:41 Heat of formation + Delta-G solvation = -166.355314 kcal Electronic energy + Delta-G solvation = -25923.238361 eV Core-core repulsion = 21893.741893 eV Total energy + Delta-G solvation = -4029.496468 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.47653 -40.80473 -39.35844 -38.08819 -37.03905 -35.57948 -35.40456 -34.31289 -33.58370 -31.91972 -31.09568 -29.02176 -26.76345 -25.59419 -23.59030 -23.44233 -22.15926 -20.84772 -20.45646 -19.32776 -18.92961 -18.32156 -17.72914 -17.59133 -17.02077 -16.69797 -16.41761 -16.17953 -16.12921 -15.79224 -15.67989 -14.95566 -14.80620 -14.60952 -14.49334 -14.43318 -14.15322 -13.97082 -13.67773 -13.49082 -13.19404 -13.09013 -13.00677 -12.91251 -12.81545 -12.72850 -12.55155 -12.53972 -12.21890 -12.01740 -11.91515 -11.86834 -11.36410 -11.04762 -10.78665 -10.77677 -9.95790 -9.67960 -8.42840 -6.61781 -0.72658 -0.34574 0.42936 1.08391 1.37538 1.38882 1.41486 1.49425 1.63227 2.29908 2.74402 2.81379 2.85434 2.91508 3.29644 3.44648 3.69224 3.84712 3.95579 4.04444 4.08574 4.11202 4.23736 4.41598 4.48871 4.62958 4.66281 4.76016 4.79703 4.80351 4.82612 4.85902 4.94369 5.10120 5.23726 5.28966 5.34794 5.41901 5.60130 5.67639 5.75341 5.96472 6.44809 6.46964 6.51192 7.09814 8.69829 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.015939 B = 0.002323 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.269362 B =12051.040742 C =13229.722388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.056 4.056 3 C -0.142 4.142 4 C -0.070 4.070 5 C -0.197 4.197 6 C 0.410 3.590 7 O -0.481 6.481 8 C -0.159 4.159 9 C -0.125 4.125 10 C 0.532 3.468 11 O -0.529 6.529 12 N -1.044 6.044 13 S 2.598 3.402 14 O -0.982 6.982 15 O -0.984 6.984 16 C -0.420 4.420 17 C -0.569 4.569 18 H 0.067 0.933 19 C 0.026 3.974 20 N -0.907 5.907 21 Si 0.966 3.034 22 H -0.264 1.264 23 H -0.269 1.269 24 H -0.259 1.259 25 C -0.071 4.071 26 C -0.143 4.143 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.148 0.852 31 H 0.131 0.869 32 H 0.118 0.882 33 H 0.116 0.884 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.448 0.552 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.275 0.725 40 H 0.145 0.855 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.597 16.137 5.631 25.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.057 4.057 3 C -0.160 4.160 4 C -0.088 4.088 5 C -0.198 4.198 6 C 0.290 3.710 7 O -0.359 6.359 8 C -0.196 4.196 9 C -0.166 4.166 10 C 0.320 3.680 11 O -0.402 6.402 12 N -0.810 5.810 13 S 2.698 3.302 14 O -0.972 6.972 15 O -0.975 6.975 16 C -0.555 4.555 17 C -0.608 4.608 18 H 0.085 0.915 19 C -0.178 4.178 20 N -0.544 5.544 21 Si 0.787 3.213 22 H -0.189 1.189 23 H -0.193 1.193 24 H -0.184 1.184 25 C -0.089 4.089 26 C -0.161 4.161 27 H 0.103 0.897 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.165 0.835 31 H 0.149 0.851 32 H 0.136 0.864 33 H 0.134 0.866 34 H 0.147 0.853 35 H 0.148 0.852 36 H 0.287 0.713 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.084 0.916 40 H 0.163 0.837 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -18.253 15.633 6.204 24.820 hybrid contribution 0.505 -0.429 -0.802 1.041 sum -17.747 15.204 5.402 23.985 Atomic orbital electron populations 1.20956 0.88930 1.04155 1.03589 1.20609 0.97913 0.92898 0.94234 1.21300 0.93507 0.99024 1.02121 1.21539 0.94889 0.97591 0.94763 1.20500 0.94433 0.95208 1.09688 1.22513 0.88741 0.90022 0.69726 1.90506 1.71540 1.35637 1.38211 1.21897 0.93433 0.97022 1.07283 1.21652 0.94009 0.92529 1.08405 1.21361 0.81219 0.93480 0.71935 1.90900 1.67748 1.35049 1.46548 1.54948 1.16632 1.28830 1.80572 1.05457 0.72944 0.73445 0.78326 1.93498 1.33524 1.81745 1.88480 1.93485 1.78617 1.71909 1.53445 1.27652 1.06915 1.06850 1.14102 1.20701 1.31453 1.03067 1.05588 0.91453 1.25857 0.95172 1.02322 0.94439 1.70022 1.37151 1.39755 1.07426 0.85488 0.79470 0.77893 0.78400 1.18894 1.19300 1.18353 1.21757 0.95055 0.97608 0.94498 1.21380 0.93938 0.99003 1.01782 0.89691 0.90211 0.90316 0.83468 0.85130 0.86425 0.86636 0.85265 0.85242 0.71306 0.90007 0.89629 0.91633 0.83720 0.83504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.84 10.00 71.23 0.71 -0.13 16 2 C -0.06 -0.71 5.89 -19.79 -0.12 -0.83 16 3 C -0.14 -1.94 9.68 22.23 0.22 -1.73 16 4 C -0.07 -1.22 9.60 22.58 0.22 -1.01 16 5 C -0.20 -3.74 5.87 -20.15 -0.12 -3.85 16 6 C 0.41 8.37 7.12 28.03 0.20 8.57 16 7 O -0.48 -11.79 15.98 -2.97 -0.05 -11.84 16 8 C -0.16 -3.09 3.60 29.85 0.11 -2.99 16 9 C -0.12 -2.50 4.99 29.85 0.15 -2.35 16 10 C 0.53 15.85 7.57 87.66 0.66 16.52 16 11 O -0.53 -20.39 14.08 13.35 0.19 -20.20 16 12 N -1.04 -31.22 5.60 -173.53 -0.97 -32.19 16 13 S 2.60 110.96 5.03 -56.49 -0.28 110.67 16 14 O -0.98 -44.08 18.08 -127.65 -2.31 -46.38 16 15 O -0.98 -48.56 17.04 -120.72 -2.06 -50.61 16 16 C -0.42 -21.12 5.64 71.24 0.40 -20.72 16 17 C -0.57 -32.29 9.13 25.60 0.23 -32.06 16 18 H 0.07 3.73 7.71 -2.91 -0.02 3.70 16 19 C 0.03 1.43 5.46 84.66 0.46 1.89 16 20 N -0.91 -52.16 13.29 21.45 0.28 -51.87 16 21 Si 0.97 42.95 29.54 68.60 2.03 44.97 16 22 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 23 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 24 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 25 C -0.07 -1.16 9.47 22.58 0.21 -0.95 16 26 C -0.14 -1.98 9.68 22.23 0.22 -1.77 16 27 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.08 0.41 8.08 -2.39 -0.02 0.40 16 29 H 0.08 0.45 8.08 -2.38 -0.02 0.43 16 30 H 0.15 1.31 8.06 -2.91 -0.02 1.29 16 31 H 0.13 2.26 7.65 -2.91 -0.02 2.23 16 32 H 0.12 2.17 8.04 -2.39 -0.02 2.15 16 33 H 0.12 2.23 8.05 -2.39 -0.02 2.21 16 34 H 0.13 2.14 8.10 -2.39 -0.02 2.12 16 35 H 0.13 2.08 8.10 -2.39 -0.02 2.06 16 36 H 0.45 9.14 8.79 -96.75 -0.85 8.29 16 37 H 0.08 4.33 7.19 -2.39 -0.02 4.31 16 38 H 0.09 4.17 8.14 -2.39 -0.02 4.15 16 39 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 40 H 0.15 2.05 7.05 -2.91 -0.02 2.03 16 41 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 Total: -1.00 -80.01 371.20 0.60 -79.41 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: 0.22 Total: 19.44 kcal Atomic # 6 Polarization: -44.95 SS G_CDS: 3.56 Total: -41.40 kcal Atomic # 7 Polarization: -83.38 SS G_CDS: -0.69 Total: -84.07 kcal Atomic # 8 Polarization: -124.81 SS G_CDS: -4.22 Total: -129.03 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.97 kcal Atomic # 16 Polarization: 110.96 SS G_CDS: -0.28 Total: 110.67 kcal Total: -80.01 0.60 -79.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835412838.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.945 kcal (2) G-P(sol) polarization free energy of solvation -80.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds