Wall clock time and date at job start Tue Mar 31 2020 23:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46560 * 2 1 4 4 C 1.50698 * 109.46867 * 240.00193 * 2 1 3 5 5 H 1.08003 * 119.99901 * 239.98909 * 4 2 1 6 6 C 1.37879 * 120.00085 * 60.00231 * 4 2 1 7 7 N 1.31515 * 119.99986 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99884 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47515 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47249 * 119.99749 * 8 6 4 11 11 H 1.48498 * 109.47194 * 239.99821 * 8 6 4 12 12 C 1.52999 * 109.47399 * 119.99898 * 2 1 3 13 13 N 1.46500 * 109.47048 * 300.00692 * 12 2 1 14 14 S 1.65603 * 119.99936 * 165.00005 * 13 12 2 15 15 O 1.42094 * 106.40143 * 311.45485 * 14 13 12 16 16 O 1.42098 * 106.40062 * 178.53116 * 14 13 12 17 17 C 1.76208 * 107.21687 * 64.99674 * 14 13 12 18 18 C 1.38388 * 119.83560 * 269.72298 * 17 14 13 19 19 C 1.38489 * 120.21662 * 180.31723 * 18 17 14 20 20 C 1.37545 * 119.94814 * 359.92415 * 19 18 17 21 21 C 1.39749 * 120.30424 * 0.07422 * 20 19 18 22 22 C 1.37945 * 119.83919 * 90.00099 * 17 14 13 23 23 C 1.47423 * 108.04404 * 179.97438 * 21 20 19 24 24 O 1.21465 * 124.89860 * 179.97438 * 23 21 20 25 25 O 1.34348 * 110.20598 * 0.02562 * 23 21 20 26 26 C 1.45388 * 109.00913 * 359.97438 * 25 23 21 27 27 H 1.08999 * 109.47076 * 299.99440 * 1 2 3 28 28 H 1.08996 * 109.47704 * 60.00379 * 1 2 3 29 29 H 1.09011 * 109.46871 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46662 * 180.02562 * 3 2 1 31 31 H 1.08996 * 109.46802 * 300.00173 * 3 2 1 32 32 H 1.08999 * 109.46969 * 60.00494 * 3 2 1 33 33 H 0.97003 * 119.99829 * 180.02562 * 7 6 4 34 34 H 1.08992 * 109.47164 * 180.02562 * 12 2 1 35 35 H 1.09006 * 109.46692 * 60.00458 * 12 2 1 36 36 H 0.97000 * 119.99896 * 344.99389 * 13 12 2 37 37 H 1.08006 * 119.89700 * 0.28384 * 18 17 14 38 38 H 1.08004 * 120.02688 * 180.02562 * 19 18 17 39 39 H 1.08001 * 120.10046 * 359.73861 * 22 17 14 40 40 H 1.09004 * 110.06889 * 119.24107 * 26 25 23 41 41 H 1.09003 * 110.07164 * 240.70603 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3224 -1.1194 -4.0080 9 1 3.1483 -2.2855 -3.6039 10 1 1.1677 -1.5865 -4.8165 11 1 3.1471 -0.1856 -4.8161 12 6 2.0401 -0.7212 1.2492 13 7 1.5516 -0.0307 2.4454 14 16 1.6257 -0.7782 3.9212 15 8 1.0840 -2.0792 3.7396 16 8 1.1156 0.1510 4.8677 17 6 3.3303 -0.9986 4.3094 18 6 3.9797 -2.1583 3.9242 19 6 5.3176 -2.3426 4.2309 20 6 6.0047 -1.3699 4.9191 21 6 5.3585 -0.1949 5.3127 22 6 4.0093 -0.0168 5.0006 23 6 6.3370 0.6482 6.0234 24 8 6.0985 1.7411 6.4967 25 8 7.5308 0.0338 6.0711 26 6 7.4289 -1.2520 5.4003 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5137 -0.8899 29 1 -0.3633 -1.0278 0.0005 30 1 3.1299 1.4426 -0.0005 31 1 1.6765 1.9563 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 0.7081 1.1610 -3.4844 34 1 3.1300 -0.7208 1.2494 35 1 1.6768 -1.7489 1.2491 36 1 1.1850 0.8644 2.3729 37 1 3.4414 -2.9225 3.3832 38 1 5.8216 -3.2488 3.9285 39 1 3.4989 0.8868 5.2996 40 1 8.1138 -1.2873 4.5531 41 1 7.6566 -2.0574 6.0987 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841542582.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:01 Heat of formation + Delta-G solvation = -118.786392 kcal Electronic energy + Delta-G solvation = -27446.876242 eV Core-core repulsion = 23419.442517 eV Total energy + Delta-G solvation = -4027.433725 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.97219 -38.79484 -37.68676 -37.26408 -36.88492 -35.77525 -33.32334 -32.57956 -31.70883 -30.61687 -27.88684 -25.75021 -25.62815 -24.96163 -24.58233 -23.00637 -21.36504 -19.63141 -19.00328 -18.35719 -17.56545 -17.39901 -17.20048 -16.95400 -15.86613 -15.74238 -15.44723 -15.27434 -14.76297 -14.41047 -14.20409 -14.12470 -14.01217 -13.64103 -13.39764 -13.12688 -12.77586 -12.35557 -12.31526 -12.04028 -11.94862 -11.86726 -11.56751 -11.43272 -11.20363 -11.10492 -10.95786 -10.69787 -10.67662 -10.46195 -10.22973 -9.78560 -9.71045 -9.62986 -9.41870 -8.96962 -8.83316 -8.42857 -6.06821 -4.18108 -0.04724 0.39499 0.55508 1.98277 2.59740 2.91940 3.16337 3.22384 3.29301 3.31852 3.34294 3.54472 3.80443 4.12612 4.32897 4.37433 4.56458 4.62823 4.68449 4.85329 5.01118 5.19976 5.27890 5.39642 5.49369 5.58391 5.65239 6.05175 6.07308 6.23499 6.33854 6.40906 6.69213 6.85172 6.93962 6.99970 7.06340 7.28184 7.41037 7.53838 7.64869 7.98372 8.09551 8.33332 8.82153 9.48056 10.94305 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.013358 B = 0.003414 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.672497 B = 8198.800854 C = 9013.956322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.063 3.937 3 C -0.132 4.132 4 C -0.509 4.509 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.892 3.108 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.285 1.285 12 C 0.126 3.874 13 N -1.103 6.103 14 S 2.692 3.308 15 O -0.952 6.952 16 O -0.964 6.964 17 C -0.681 4.681 18 C 0.024 3.976 19 C -0.118 4.118 20 C -0.055 4.055 21 C -0.219 4.219 22 C 0.068 3.932 23 C 0.525 3.475 24 O -0.445 6.445 25 O -0.317 6.317 26 C 0.087 3.913 27 H 0.010 0.990 28 H 0.084 0.916 29 H 0.028 0.972 30 H 0.026 0.974 31 H 0.086 0.914 32 H 0.009 0.991 33 H 0.260 0.740 34 H 0.051 0.949 35 H 0.069 0.931 36 H 0.420 0.580 37 H 0.158 0.842 38 H 0.147 0.853 39 H 0.154 0.846 40 H 0.125 0.875 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.955 -6.289 13.007 17.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.062 3.938 3 C -0.190 4.190 4 C -0.548 4.548 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.521 5.521 8 Si 0.721 3.279 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.211 1.211 12 C 0.001 3.999 13 N -0.867 5.867 14 S 2.778 3.222 15 O -0.942 6.942 16 O -0.954 6.954 17 C -0.764 4.764 18 C 0.005 3.995 19 C -0.136 4.136 20 C -0.056 4.056 21 C -0.222 4.222 22 C 0.048 3.952 23 C 0.367 3.633 24 O -0.330 6.330 25 O -0.233 6.233 26 C 0.013 3.987 27 H 0.029 0.971 28 H 0.103 0.897 29 H 0.047 0.953 30 H 0.045 0.955 31 H 0.105 0.895 32 H 0.028 0.972 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.257 0.743 37 H 0.176 0.824 38 H 0.165 0.835 39 H 0.172 0.828 40 H 0.143 0.857 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 9.385 -6.022 13.733 17.690 hybrid contribution 0.973 -0.121 -1.140 1.504 sum 10.358 -6.143 12.593 17.424 Atomic orbital electron populations 1.21828 0.97485 0.99398 1.00336 1.18272 0.93073 0.92618 0.89886 1.21843 0.98427 0.98436 1.00322 1.21015 1.31704 1.12153 0.89926 0.92401 1.24886 0.94833 0.94895 0.98868 1.69819 1.36411 1.22676 1.23187 0.86537 0.78645 0.79649 0.83112 1.19833 1.21031 1.21127 1.21722 0.97196 0.96179 0.84823 1.55464 1.77771 1.30905 1.22556 1.02056 0.73281 0.73972 0.72881 1.93594 1.75006 1.39809 1.85806 1.93585 1.77521 1.63495 1.60776 1.31453 1.28685 1.02629 1.13667 1.21342 0.93745 0.94196 0.90227 1.20431 0.94187 0.99220 0.99776 1.21119 0.95925 0.94366 0.94190 1.20871 0.96333 0.97911 1.07084 1.20596 0.91044 0.96538 0.86994 1.20375 0.81055 0.84789 0.77106 1.90918 1.79290 1.18054 1.44691 1.87264 1.32951 1.31916 1.71168 1.22547 0.93586 0.83885 0.98717 0.97069 0.89696 0.95282 0.95472 0.89539 0.97222 0.92991 0.93085 0.91233 0.74290 0.82404 0.83478 0.82824 0.85712 0.85837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 2 C 0.06 1.38 0.51 -155.66 -0.08 1.30 16 3 C -0.13 -2.83 8.08 37.16 0.30 -2.53 16 4 C -0.51 -12.42 8.01 -34.44 -0.28 -12.69 16 5 H 0.06 1.38 7.74 -52.48 -0.41 0.98 16 6 C 0.07 1.68 5.15 -17.82 -0.09 1.59 16 7 N -0.88 -22.81 9.35 55.43 0.52 -22.29 16 8 Si 0.89 19.76 29.54 -169.99 -5.02 14.74 16 9 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 12 C 0.13 2.23 5.05 -4.04 -0.02 2.21 16 13 N -1.10 -17.11 5.33 -10.61 -0.06 -17.16 16 14 S 2.69 38.98 5.73 -107.50 -0.62 38.36 16 15 O -0.95 -15.76 16.73 -57.17 -0.96 -16.72 16 16 O -0.96 -15.79 17.27 -57.17 -0.99 -16.78 16 17 C -0.68 -8.37 5.94 -39.63 -0.24 -8.61 16 18 C 0.02 0.24 9.52 -39.43 -0.38 -0.13 16 19 C -0.12 -0.93 10.03 -39.74 -0.40 -1.33 16 20 C -0.06 -0.48 6.38 -104.26 -0.67 -1.14 16 21 C -0.22 -2.56 6.27 -105.08 -0.66 -3.22 16 22 C 0.07 0.84 9.57 -39.17 -0.37 0.47 16 23 C 0.53 6.75 8.58 34.47 0.30 7.04 16 24 O -0.45 -7.17 18.04 -18.92 -0.34 -7.51 16 25 O -0.32 -3.27 11.13 -39.19 -0.44 -3.71 16 26 C 0.09 0.51 7.92 36.05 0.29 0.80 16 27 H 0.01 0.21 7.19 -51.93 -0.37 -0.17 16 28 H 0.08 2.08 6.07 -51.93 -0.32 1.77 16 29 H 0.03 0.63 8.14 -51.92 -0.42 0.21 16 30 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.09 2.09 6.07 -51.93 -0.32 1.77 16 32 H 0.01 0.17 6.60 -51.93 -0.34 -0.17 16 33 H 0.26 6.50 8.31 -40.82 -0.34 6.16 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.07 1.23 7.75 -51.93 -0.40 0.83 16 36 H 0.42 6.33 6.47 -34.48 -0.22 6.10 16 37 H 0.16 1.42 7.60 -52.48 -0.40 1.02 16 38 H 0.15 0.65 8.06 -52.48 -0.42 0.22 16 39 H 0.15 1.86 7.61 -52.49 -0.40 1.46 16 40 H 0.13 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.12 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 353.75 15.07 5.33 5.33 Total: -1.00 -32.00 353.75 -9.41 -41.41 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -4.85 Total: 3.19 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: -2.00 Total: -18.87 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: 0.46 Total: -39.46 kcal Atomic # 8 Polarization: -41.98 SS G_CDS: -2.72 Total: -44.70 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.74 kcal Atomic # 16 Polarization: 38.98 SS G_CDS: -0.62 Total: 38.36 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.00 -9.41 -41.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841542582.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.377 kcal (2) G-P(sol) polarization free energy of solvation -32.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds