Wall clock time and date at job start Tue Mar 31 2020 23:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46560 * 2 1 4 4 C 1.50698 * 109.46867 * 240.00193 * 2 1 3 5 5 H 1.08003 * 119.99901 * 239.98909 * 4 2 1 6 6 C 1.37879 * 120.00085 * 60.00231 * 4 2 1 7 7 N 1.31515 * 119.99986 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99884 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47515 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47249 * 119.99749 * 8 6 4 11 11 H 1.48498 * 109.47194 * 239.99821 * 8 6 4 12 12 C 1.52999 * 109.47399 * 119.99898 * 2 1 3 13 13 N 1.46500 * 109.47048 * 300.00692 * 12 2 1 14 14 S 1.65603 * 119.99936 * 165.00005 * 13 12 2 15 15 O 1.42094 * 106.40143 * 311.45485 * 14 13 12 16 16 O 1.42098 * 106.40062 * 178.53116 * 14 13 12 17 17 C 1.76208 * 107.21687 * 64.99674 * 14 13 12 18 18 C 1.38388 * 119.83560 * 269.72298 * 17 14 13 19 19 C 1.38489 * 120.21662 * 180.31723 * 18 17 14 20 20 C 1.37545 * 119.94814 * 359.92415 * 19 18 17 21 21 C 1.39749 * 120.30424 * 0.07422 * 20 19 18 22 22 C 1.37945 * 119.83919 * 90.00099 * 17 14 13 23 23 C 1.47423 * 108.04404 * 179.97438 * 21 20 19 24 24 O 1.21465 * 124.89860 * 179.97438 * 23 21 20 25 25 O 1.34348 * 110.20598 * 0.02562 * 23 21 20 26 26 C 1.45388 * 109.00913 * 359.97438 * 25 23 21 27 27 H 1.08999 * 109.47076 * 299.99440 * 1 2 3 28 28 H 1.08996 * 109.47704 * 60.00379 * 1 2 3 29 29 H 1.09011 * 109.46871 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46662 * 180.02562 * 3 2 1 31 31 H 1.08996 * 109.46802 * 300.00173 * 3 2 1 32 32 H 1.08999 * 109.46969 * 60.00494 * 3 2 1 33 33 H 0.97003 * 119.99829 * 180.02562 * 7 6 4 34 34 H 1.08992 * 109.47164 * 180.02562 * 12 2 1 35 35 H 1.09006 * 109.46692 * 60.00458 * 12 2 1 36 36 H 0.97000 * 119.99896 * 344.99389 * 13 12 2 37 37 H 1.08006 * 119.89700 * 0.28384 * 18 17 14 38 38 H 1.08004 * 120.02688 * 180.02562 * 19 18 17 39 39 H 1.08001 * 120.10046 * 359.73861 * 22 17 14 40 40 H 1.09004 * 110.06889 * 119.24107 * 26 25 23 41 41 H 1.09003 * 110.07164 * 240.70603 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3224 -1.1194 -4.0080 9 1 3.1483 -2.2855 -3.6039 10 1 1.1677 -1.5865 -4.8165 11 1 3.1471 -0.1856 -4.8161 12 6 2.0401 -0.7212 1.2492 13 7 1.5516 -0.0307 2.4454 14 16 1.6257 -0.7782 3.9212 15 8 1.0840 -2.0792 3.7396 16 8 1.1156 0.1510 4.8677 17 6 3.3303 -0.9986 4.3094 18 6 3.9797 -2.1583 3.9242 19 6 5.3176 -2.3426 4.2309 20 6 6.0047 -1.3699 4.9191 21 6 5.3585 -0.1949 5.3127 22 6 4.0093 -0.0168 5.0006 23 6 6.3370 0.6482 6.0234 24 8 6.0985 1.7411 6.4967 25 8 7.5308 0.0338 6.0711 26 6 7.4289 -1.2520 5.4003 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5137 -0.8899 29 1 -0.3633 -1.0278 0.0005 30 1 3.1299 1.4426 -0.0005 31 1 1.6765 1.9563 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 0.7081 1.1610 -3.4844 34 1 3.1300 -0.7208 1.2494 35 1 1.6768 -1.7489 1.2491 36 1 1.1850 0.8644 2.3729 37 1 3.4414 -2.9225 3.3832 38 1 5.8216 -3.2488 3.9285 39 1 3.4989 0.8868 5.2996 40 1 8.1138 -1.2873 4.5531 41 1 7.6566 -2.0574 6.0987 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841542582.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:00 Heat of formation + Delta-G solvation = -140.261471 kcal Electronic energy + Delta-G solvation = -27447.807471 eV Core-core repulsion = 23419.442517 eV Total energy + Delta-G solvation = -4028.364954 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.76034 -39.64694 -38.68444 -38.61064 -38.29250 -37.02009 -34.92712 -33.36270 -32.49441 -32.32216 -28.53993 -27.49882 -27.36825 -26.25107 -25.76451 -23.81243 -22.15208 -20.82668 -20.58554 -19.41141 -18.64556 -18.43222 -17.95924 -17.84783 -17.61166 -16.98625 -16.61616 -16.23286 -16.12497 -15.48382 -15.18051 -15.02535 -14.88737 -14.87253 -14.83756 -14.19913 -14.02098 -13.53860 -13.41924 -13.34208 -13.29606 -13.20396 -13.05405 -12.90960 -12.73833 -12.44511 -12.27045 -12.16847 -12.06322 -12.02977 -11.61249 -11.44297 -11.08928 -10.62964 -10.56195 -10.42170 -10.35850 -10.21269 -7.95129 -6.11254 -0.86571 -0.66119 -0.35024 1.12406 1.46435 1.51302 1.58922 1.85023 1.94126 2.24586 2.49071 2.51297 2.68380 2.86536 3.26644 3.29549 3.49556 3.84623 4.03465 4.08264 4.24085 4.26966 4.43736 4.55817 4.59592 4.60914 4.74651 4.78256 4.83308 4.85972 5.10669 5.15567 5.26974 5.28389 5.32076 5.48490 5.55821 5.73598 5.74719 6.07114 6.14321 6.20835 6.30884 6.49405 6.96634 7.56957 9.03866 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.013358 B = 0.003414 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.672497 B = 8198.800854 C = 9013.956322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.052 3.948 3 C -0.125 4.125 4 C -0.519 4.519 5 H 0.061 0.939 6 C 0.022 3.978 7 N -0.905 5.905 8 Si 0.945 3.055 9 H -0.264 1.264 10 H -0.289 1.289 11 H -0.288 1.288 12 C 0.136 3.864 13 N -1.106 6.106 14 S 2.710 3.290 15 O -0.975 6.975 16 O -0.988 6.988 17 C -0.688 4.688 18 C 0.017 3.983 19 C -0.103 4.103 20 C -0.035 4.035 21 C -0.244 4.244 22 C 0.052 3.948 23 C 0.525 3.475 24 O -0.496 6.496 25 O -0.324 6.324 26 C 0.083 3.917 27 H 0.029 0.971 28 H 0.057 0.943 29 H 0.022 0.978 30 H 0.027 0.973 31 H 0.056 0.944 32 H 0.031 0.969 33 H 0.256 0.744 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.420 0.580 37 H 0.172 0.828 38 H 0.195 0.805 39 H 0.143 0.857 40 H 0.162 0.838 41 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.514 -8.839 13.357 20.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.050 3.950 3 C -0.183 4.183 4 C -0.558 4.558 5 H 0.079 0.921 6 C -0.177 4.177 7 N -0.544 5.544 8 Si 0.772 3.228 9 H -0.188 1.188 10 H -0.216 1.216 11 H -0.214 1.214 12 C 0.010 3.990 13 N -0.869 5.869 14 S 2.801 3.199 15 O -0.965 6.965 16 O -0.978 6.978 17 C -0.775 4.775 18 C -0.002 4.002 19 C -0.121 4.121 20 C -0.036 4.036 21 C -0.247 4.247 22 C 0.032 3.968 23 C 0.369 3.631 24 O -0.384 6.384 25 O -0.239 6.239 26 C 0.011 3.989 27 H 0.048 0.952 28 H 0.076 0.924 29 H 0.041 0.959 30 H 0.046 0.954 31 H 0.075 0.925 32 H 0.050 0.950 33 H 0.066 0.934 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.258 0.742 37 H 0.189 0.811 38 H 0.212 0.788 39 H 0.161 0.839 40 H 0.179 0.821 41 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 11.918 -8.597 14.066 20.342 hybrid contribution 0.272 0.592 -1.208 1.373 sum 12.190 -8.005 12.858 19.443 Atomic orbital electron populations 1.21728 0.98146 0.98783 0.99867 1.18319 0.92642 0.92949 0.91042 1.21706 0.98334 0.98341 0.99922 1.21394 1.31227 1.12163 0.90997 0.92104 1.25530 0.95323 0.95579 1.01291 1.69965 1.37454 1.23767 1.23224 0.85712 0.77908 0.78877 0.80298 1.18830 1.21580 1.21443 1.21458 0.98055 0.95692 0.83760 1.55368 1.78258 1.30793 1.22465 1.01182 0.73877 0.72899 0.71967 1.93558 1.76449 1.40510 1.85939 1.93551 1.78896 1.64214 1.61161 1.30893 1.26921 1.04106 1.15616 1.21708 0.95107 0.93448 0.89968 1.20882 0.92999 1.00294 0.97943 1.21514 0.97025 0.92713 0.92361 1.20871 0.96035 0.99427 1.08347 1.20573 0.91859 0.96544 0.87815 1.20584 0.81858 0.84324 0.76288 1.90879 1.80306 1.20217 1.47004 1.87241 1.31680 1.33705 1.71285 1.23144 0.92245 0.82799 1.00704 0.95221 0.92438 0.95870 0.95386 0.92537 0.95011 0.93447 0.91417 0.91129 0.74229 0.81072 0.78753 0.83944 0.82095 0.81721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.64 8.08 71.98 0.58 -5.06 16 2 C 0.05 2.24 0.51 -52.93 -0.03 2.21 16 3 C -0.13 -5.32 8.08 71.98 0.58 -4.74 16 4 C -0.52 -24.98 8.01 25.60 0.21 -24.78 16 5 H 0.06 2.82 7.74 -2.91 -0.02 2.80 16 6 C 0.02 1.10 5.15 84.66 0.44 1.54 16 7 N -0.90 -47.55 9.35 21.45 0.20 -47.35 16 8 Si 0.94 40.31 29.54 68.60 2.03 42.33 16 9 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 10 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.29 -12.33 7.11 99.48 0.71 -11.63 16 12 C 0.14 4.64 5.05 86.38 0.44 5.08 16 13 N -1.11 -33.51 5.33 -187.49 -1.00 -34.51 16 14 S 2.71 77.30 5.73 -56.49 -0.32 76.97 16 15 O -0.97 -31.47 16.73 -128.00 -2.14 -33.61 16 16 O -0.99 -32.83 17.27 -128.00 -2.21 -35.04 16 17 C -0.69 -16.02 5.94 22.24 0.13 -15.89 16 18 C 0.02 0.29 9.52 22.37 0.21 0.50 16 19 C -0.10 -1.12 10.03 22.17 0.22 -0.89 16 20 C -0.04 -0.46 6.38 -19.63 -0.13 -0.59 16 21 C -0.24 -5.35 6.27 -20.16 -0.13 -5.48 16 22 C 0.05 1.28 9.57 22.53 0.22 1.49 16 23 C 0.53 13.22 8.58 70.24 0.60 13.83 16 24 O -0.50 -16.55 18.04 19.64 0.35 -16.20 16 25 O -0.32 -5.88 11.13 -52.92 -0.59 -6.46 16 26 C 0.08 0.56 7.92 71.27 0.56 1.13 16 27 H 0.03 1.15 7.19 -2.39 -0.02 1.13 16 28 H 0.06 2.87 6.07 -2.39 -0.01 2.85 16 29 H 0.02 1.00 8.14 -2.38 -0.02 0.98 16 30 H 0.03 1.13 8.14 -2.39 -0.02 1.12 16 31 H 0.06 2.76 6.07 -2.39 -0.01 2.74 16 32 H 0.03 1.16 6.60 -2.39 -0.02 1.15 16 33 H 0.26 13.09 8.31 -92.71 -0.77 12.32 16 34 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.07 2.39 7.75 -2.38 -0.02 2.37 16 36 H 0.42 12.50 6.47 -96.74 -0.63 11.88 16 37 H 0.17 2.49 7.60 -2.91 -0.02 2.46 16 38 H 0.20 0.31 8.06 -2.91 -0.02 0.28 16 39 H 0.14 3.67 7.61 -2.91 -0.02 3.65 16 40 H 0.16 0.09 8.14 -2.38 -0.02 0.07 16 41 H 0.17 -0.09 8.14 -2.39 -0.02 -0.11 16 Total: -1.00 -71.92 353.75 0.69 -71.24 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: 0.46 Total: 14.29 kcal Atomic # 6 Polarization: -35.57 SS G_CDS: 3.91 Total: -31.65 kcal Atomic # 7 Polarization: -81.07 SS G_CDS: -0.80 Total: -81.87 kcal Atomic # 8 Polarization: -86.73 SS G_CDS: -4.59 Total: -91.31 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 2.03 Total: 42.33 kcal Atomic # 16 Polarization: 77.30 SS G_CDS: -0.32 Total: 76.97 kcal Total: -71.92 0.69 -71.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841542582.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.024 kcal (2) G-P(sol) polarization free energy of solvation -71.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds