Wall clock time and date at job start Tue Mar 31 2020 23:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.47085 * 2 1 4 4 C 1.50698 * 109.47697 * 239.99683 * 2 1 3 5 5 H 1.07998 * 120.00244 * 242.94759 * 4 2 1 6 6 C 1.37882 * 119.99845 * 62.94339 * 4 2 1 7 7 N 1.31510 * 120.00106 * 191.91572 * 6 4 2 8 8 Si 1.86806 * 119.99989 * 11.91064 * 6 4 2 9 9 H 1.48502 * 109.46644 * 86.44138 * 8 6 4 10 10 H 1.48496 * 109.46964 * 206.44318 * 8 6 4 11 11 H 1.48496 * 109.46963 * 326.44288 * 8 6 4 12 12 C 1.53001 * 109.47126 * 119.99280 * 2 1 3 13 13 N 1.46494 * 109.47601 * 300.00551 * 12 2 1 14 14 S 1.65601 * 120.00531 * 163.29896 * 13 12 2 15 15 O 1.42103 * 106.39535 * 309.30201 * 14 13 12 16 16 O 1.42098 * 106.40245 * 176.38372 * 14 13 12 17 17 C 1.76191 * 107.21814 * 62.83909 * 14 13 12 18 18 C 1.38531 * 120.03018 * 244.30010 * 17 14 13 19 19 C 1.38348 * 120.22432 * 179.97438 * 18 17 14 20 20 C 1.37984 * 120.31619 * 359.97438 * 19 18 17 21 21 C 1.39574 * 119.79888 * 0.02562 * 20 19 18 22 22 C 1.37495 * 120.02596 * 64.27460 * 17 14 13 23 23 C 1.50799 * 133.37833 * 0.02562 * 22 17 14 24 24 O 1.45393 * 106.41862 * 179.97438 * 23 22 17 25 25 C 1.34347 * 109.01604 * 359.97438 * 24 23 22 26 26 O 1.21472 * 124.89221 * 180.02562 * 25 24 23 27 27 H 1.08997 * 109.47081 * 310.20952 * 1 2 3 28 28 H 1.09003 * 109.46975 * 70.20578 * 1 2 3 29 29 H 1.08997 * 109.47071 * 190.20099 * 1 2 3 30 30 H 1.08999 * 109.46946 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.46629 * 299.99476 * 3 2 1 32 32 H 1.08996 * 109.46905 * 59.99605 * 3 2 1 33 33 H 0.97001 * 120.00208 * 179.97438 * 7 6 4 34 34 H 1.08997 * 109.47569 * 179.97438 * 12 2 1 35 35 H 1.09009 * 109.46521 * 60.00403 * 12 2 1 36 36 H 0.97009 * 119.99502 * 343.29798 * 13 12 2 37 37 H 1.08006 * 119.88572 * 0.25031 * 18 17 14 38 38 H 1.08002 * 119.84380 * 180.02562 * 19 18 17 39 39 H 1.08000 * 120.10319 * 179.97438 * 20 19 18 40 40 H 1.09001 * 110.06524 * 299.23538 * 23 22 17 41 41 H 1.09001 * 110.06869 * 60.69980 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6135 -1.6154 -1.1319 6 6 1.7502 -0.2051 -2.4818 7 7 1.9789 -0.9340 -3.5522 8 14 1.0429 1.5150 -2.6568 9 1 2.1501 2.5037 -2.6969 10 1 0.2563 1.6013 -3.9133 11 1 0.1600 1.8072 -1.4991 12 6 2.0400 -0.7211 1.2493 13 7 1.5516 -0.0305 2.4454 14 16 1.5866 -0.7938 3.9147 15 8 0.9702 -2.0598 3.7238 16 8 1.1337 0.1550 4.8706 17 6 3.2766 -1.1155 4.2951 18 6 3.7278 -2.4213 4.3973 19 6 5.0541 -2.6786 4.6952 20 6 5.9382 -1.6377 4.8925 21 6 5.4912 -0.3193 4.7913 22 6 4.1489 -0.0707 4.4902 23 6 3.9934 1.4288 4.4543 24 8 5.3041 1.9850 4.7489 25 6 6.1725 0.9789 4.9455 26 8 7.3495 1.1189 5.2109 27 1 -0.3633 0.6634 0.7848 28 1 -0.3633 0.3480 -0.9670 29 1 -0.3633 -1.0114 0.1820 30 1 3.1300 1.4426 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 1.7800 -0.5786 -4.4326 34 1 3.1299 -0.7215 1.2492 35 1 1.6766 -1.7488 1.2493 36 1 1.2077 0.8739 2.3768 37 1 3.0428 -3.2413 4.2394 38 1 5.3993 -3.6990 4.7730 39 1 6.9727 -1.8425 5.1254 40 1 3.6655 1.7472 3.4648 41 1 3.2731 1.7483 5.2075 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841542793.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:04 Heat of formation + Delta-G solvation = -96.912737 kcal Electronic energy + Delta-G solvation = -28170.154481 eV Core-core repulsion = 24143.669269 eV Total energy + Delta-G solvation = -4026.485212 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.96170 -38.80543 -37.70539 -37.54254 -37.19907 -35.95931 -33.43674 -32.48080 -31.90772 -31.40782 -27.74389 -26.48759 -25.84734 -24.99305 -24.71198 -22.78983 -21.90057 -19.54009 -19.42290 -18.26060 -17.79509 -17.42745 -17.14728 -16.78932 -16.19355 -16.07976 -15.82540 -15.29864 -15.08101 -14.64211 -14.27928 -14.15578 -13.93283 -13.82486 -13.40774 -13.06795 -12.84225 -12.76444 -12.50902 -12.47164 -12.20749 -12.13101 -12.09498 -11.93739 -11.71547 -11.32661 -11.29165 -10.58568 -10.55927 -10.31454 -10.25919 -10.12916 -9.96056 -9.51807 -9.28853 -9.18322 -8.73988 -8.56261 -6.21716 -4.20912 0.01286 0.21135 0.39117 1.98212 2.63884 2.85999 3.06576 3.17430 3.19423 3.26242 3.34777 3.55906 3.58284 4.13518 4.29205 4.38520 4.50578 4.69918 4.72103 4.85715 4.97499 5.09650 5.10608 5.33933 5.38836 5.48454 5.67782 5.80542 5.86750 5.93725 6.08268 6.22851 6.25381 6.34997 6.46420 6.54088 6.58444 6.81754 7.05705 7.06340 7.14184 7.34840 7.64290 8.34699 8.80775 9.41592 10.91097 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.013152 B = 0.004110 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.414156 B = 6810.437172 C = 7423.527256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.036 3.964 3 C -0.151 4.151 4 C -0.516 4.516 5 H 0.077 0.923 6 C 0.076 3.924 7 N -0.891 5.891 8 Si 0.885 3.115 9 H -0.287 1.287 10 H -0.305 1.305 11 H -0.247 1.247 12 C 0.136 3.864 13 N -1.111 6.111 14 S 2.690 3.310 15 O -0.948 6.948 16 O -0.962 6.962 17 C -0.654 4.654 18 C 0.019 3.981 19 C -0.144 4.144 20 C 0.016 3.984 21 C -0.216 4.216 22 C -0.001 4.001 23 C 0.067 3.933 24 O -0.309 6.309 25 C 0.525 3.475 26 O -0.450 6.450 27 H 0.025 0.975 28 H 0.055 0.945 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.043 0.957 32 H 0.032 0.968 33 H 0.265 0.735 34 H 0.060 0.940 35 H 0.078 0.922 36 H 0.418 0.582 37 H 0.160 0.840 38 H 0.149 0.851 39 H 0.145 0.855 40 H 0.133 0.867 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.912 -0.086 16.949 17.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.033 3.967 3 C -0.208 4.208 4 C -0.554 4.554 5 H 0.095 0.905 6 C -0.127 4.127 7 N -0.528 5.528 8 Si 0.717 3.283 9 H -0.214 1.214 10 H -0.234 1.234 11 H -0.173 1.173 12 C 0.012 3.988 13 N -0.875 5.875 14 S 2.776 3.224 15 O -0.938 6.938 16 O -0.952 6.952 17 C -0.738 4.738 18 C 0.000 4.000 19 C -0.162 4.162 20 C -0.002 4.002 21 C -0.218 4.218 22 C -0.003 4.003 23 C -0.007 4.007 24 O -0.224 6.224 25 C 0.367 3.633 26 O -0.335 6.335 27 H 0.044 0.956 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.051 0.949 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.097 0.903 36 H 0.255 0.745 37 H 0.177 0.823 38 H 0.167 0.833 39 H 0.162 0.838 40 H 0.151 0.849 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 2.893 -0.213 17.418 17.658 hybrid contribution 0.368 1.183 -0.558 1.359 sum 3.261 0.971 16.860 17.199 Atomic orbital electron populations 1.22277 0.97552 1.00129 1.00062 1.18631 0.92801 0.92098 0.93130 1.22403 1.01109 0.98421 0.98894 1.20715 1.35434 1.11199 0.88050 0.90528 1.24974 0.94590 0.97354 0.95760 1.69922 1.48079 1.36351 0.98399 0.87290 0.79474 0.85310 0.76181 1.21433 1.23376 1.17298 1.21547 0.97770 0.96263 0.83262 1.55541 1.79179 1.29469 1.23301 1.02127 0.73339 0.74059 0.72836 1.93602 1.72198 1.42478 1.85517 1.93591 1.79328 1.62335 1.59941 1.30356 1.26614 0.98373 1.18465 1.21378 0.96524 0.94749 0.87311 1.21381 0.93194 1.00003 1.01651 1.21180 1.00480 0.89733 0.88805 1.20915 0.95306 0.95535 1.10049 1.20312 0.94023 0.95056 0.90925 1.22913 0.83566 0.87763 1.06436 1.87283 1.20457 1.33231 1.81380 1.20374 0.85537 0.83534 0.73844 1.90896 1.12664 1.86389 1.43570 0.95591 0.92659 0.93199 0.92724 0.93834 0.94927 0.92487 0.92199 0.90326 0.74543 0.82254 0.83328 0.83761 0.84915 0.84191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 7.51 37.16 0.28 -2.46 16 2 C 0.04 0.71 0.52 -155.66 -0.08 0.63 16 3 C -0.15 -2.75 7.49 37.16 0.28 -2.47 16 4 C -0.52 -12.81 8.62 -34.44 -0.30 -13.11 16 5 H 0.08 2.06 7.99 -52.49 -0.42 1.64 16 6 C 0.08 2.02 5.34 -17.82 -0.10 1.92 16 7 N -0.89 -25.60 13.96 55.43 0.77 -24.82 16 8 Si 0.88 20.24 22.77 -169.99 -3.87 16.37 16 9 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.31 -7.24 7.11 56.52 0.40 -6.84 16 11 H -0.25 -5.11 4.61 56.52 0.26 -4.85 16 12 C 0.14 2.18 5.02 -4.04 -0.02 2.16 16 13 N -1.11 -14.32 5.42 -10.61 -0.06 -14.37 16 14 S 2.69 33.69 5.52 -107.50 -0.59 33.10 16 15 O -0.95 -14.28 16.50 -57.17 -0.94 -15.22 16 16 O -0.96 -13.08 17.54 -57.17 -1.00 -14.08 16 17 C -0.65 -7.25 5.82 -39.74 -0.23 -7.48 16 18 C 0.02 0.19 9.56 -39.43 -0.38 -0.19 16 19 C -0.14 -1.16 10.02 -39.63 -0.40 -1.56 16 20 C 0.02 0.15 10.10 -39.18 -0.40 -0.25 16 21 C -0.22 -2.46 6.27 -105.08 -0.66 -3.12 16 22 C 0.00 -0.02 6.11 -104.26 -0.64 -0.65 16 23 C 0.07 0.66 7.46 36.05 0.27 0.93 16 24 O -0.31 -3.75 11.13 -39.19 -0.44 -4.19 16 25 C 0.53 6.93 8.58 34.47 0.30 7.23 16 26 O -0.45 -7.05 18.04 -18.92 -0.34 -7.39 16 27 H 0.03 0.42 7.54 -51.93 -0.39 0.03 16 28 H 0.05 1.14 4.39 -51.93 -0.23 0.92 16 29 H 0.05 0.95 8.11 -51.93 -0.42 0.52 16 30 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.04 0.87 2.17 -51.93 -0.11 0.76 16 32 H 0.03 0.46 6.58 -51.93 -0.34 0.12 16 33 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.08 1.30 7.77 -51.92 -0.40 0.90 16 36 H 0.42 4.75 6.58 -34.47 -0.23 4.53 16 37 H 0.16 1.32 7.34 -52.48 -0.39 0.94 16 38 H 0.15 0.73 8.06 -52.49 -0.42 0.30 16 39 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 40 H 0.13 1.06 8.14 -51.93 -0.42 0.63 16 41 H 0.14 1.12 8.01 -51.93 -0.42 0.71 16 LS Contribution 343.44 15.07 5.18 5.18 Total: -1.00 -33.10 343.44 -8.10 -41.20 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -4.74 Total: 2.66 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: -2.07 Total: -18.42 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: 0.72 Total: -39.20 kcal Atomic # 8 Polarization: -38.16 SS G_CDS: -2.72 Total: -40.88 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -3.87 Total: 16.37 kcal Atomic # 16 Polarization: 33.69 SS G_CDS: -0.59 Total: 33.10 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.10 -8.10 -41.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841542793.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.714 kcal (2) G-P(sol) polarization free energy of solvation -33.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds