Wall clock time and date at job start Tue Mar 31 2020 23:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.47085 * 2 1 4 4 C 1.50698 * 109.47697 * 239.99683 * 2 1 3 5 5 H 1.07998 * 120.00244 * 242.94759 * 4 2 1 6 6 C 1.37882 * 119.99845 * 62.94339 * 4 2 1 7 7 N 1.31510 * 120.00106 * 191.91572 * 6 4 2 8 8 Si 1.86806 * 119.99989 * 11.91064 * 6 4 2 9 9 H 1.48502 * 109.46644 * 86.44138 * 8 6 4 10 10 H 1.48496 * 109.46964 * 206.44318 * 8 6 4 11 11 H 1.48496 * 109.46963 * 326.44288 * 8 6 4 12 12 C 1.53001 * 109.47126 * 119.99280 * 2 1 3 13 13 N 1.46494 * 109.47601 * 300.00551 * 12 2 1 14 14 S 1.65601 * 120.00531 * 163.29896 * 13 12 2 15 15 O 1.42103 * 106.39535 * 309.30201 * 14 13 12 16 16 O 1.42098 * 106.40245 * 176.38372 * 14 13 12 17 17 C 1.76191 * 107.21814 * 62.83909 * 14 13 12 18 18 C 1.38531 * 120.03018 * 244.30010 * 17 14 13 19 19 C 1.38348 * 120.22432 * 179.97438 * 18 17 14 20 20 C 1.37984 * 120.31619 * 359.97438 * 19 18 17 21 21 C 1.39574 * 119.79888 * 0.02562 * 20 19 18 22 22 C 1.37495 * 120.02596 * 64.27460 * 17 14 13 23 23 C 1.50799 * 133.37833 * 0.02562 * 22 17 14 24 24 O 1.45393 * 106.41862 * 179.97438 * 23 22 17 25 25 C 1.34347 * 109.01604 * 359.97438 * 24 23 22 26 26 O 1.21472 * 124.89221 * 180.02562 * 25 24 23 27 27 H 1.08997 * 109.47081 * 310.20952 * 1 2 3 28 28 H 1.09003 * 109.46975 * 70.20578 * 1 2 3 29 29 H 1.08997 * 109.47071 * 190.20099 * 1 2 3 30 30 H 1.08999 * 109.46946 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.46629 * 299.99476 * 3 2 1 32 32 H 1.08996 * 109.46905 * 59.99605 * 3 2 1 33 33 H 0.97001 * 120.00208 * 179.97438 * 7 6 4 34 34 H 1.08997 * 109.47569 * 179.97438 * 12 2 1 35 35 H 1.09009 * 109.46521 * 60.00403 * 12 2 1 36 36 H 0.97009 * 119.99502 * 343.29798 * 13 12 2 37 37 H 1.08006 * 119.88572 * 0.25031 * 18 17 14 38 38 H 1.08002 * 119.84380 * 180.02562 * 19 18 17 39 39 H 1.08000 * 120.10319 * 179.97438 * 20 19 18 40 40 H 1.09001 * 110.06524 * 299.23538 * 23 22 17 41 41 H 1.09001 * 110.06869 * 60.69980 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6135 -1.6154 -1.1319 6 6 1.7502 -0.2051 -2.4818 7 7 1.9789 -0.9340 -3.5522 8 14 1.0429 1.5150 -2.6568 9 1 2.1501 2.5037 -2.6969 10 1 0.2563 1.6013 -3.9133 11 1 0.1600 1.8072 -1.4991 12 6 2.0400 -0.7211 1.2493 13 7 1.5516 -0.0305 2.4454 14 16 1.5866 -0.7938 3.9147 15 8 0.9702 -2.0598 3.7238 16 8 1.1337 0.1550 4.8706 17 6 3.2766 -1.1155 4.2951 18 6 3.7278 -2.4213 4.3973 19 6 5.0541 -2.6786 4.6952 20 6 5.9382 -1.6377 4.8925 21 6 5.4912 -0.3193 4.7913 22 6 4.1489 -0.0707 4.4902 23 6 3.9934 1.4288 4.4543 24 8 5.3041 1.9850 4.7489 25 6 6.1725 0.9789 4.9455 26 8 7.3495 1.1189 5.2109 27 1 -0.3633 0.6634 0.7848 28 1 -0.3633 0.3480 -0.9670 29 1 -0.3633 -1.0114 0.1820 30 1 3.1300 1.4426 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 1.7800 -0.5786 -4.4326 34 1 3.1299 -0.7215 1.2492 35 1 1.6766 -1.7488 1.2493 36 1 1.2077 0.8739 2.3768 37 1 3.0428 -3.2413 4.2394 38 1 5.3993 -3.6990 4.7730 39 1 6.9727 -1.8425 5.1254 40 1 3.6655 1.7472 3.4648 41 1 3.2731 1.7483 5.2075 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841542793.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:03 Heat of formation + Delta-G solvation = -121.473205 kcal Electronic energy + Delta-G solvation = -28171.219502 eV Core-core repulsion = 24143.669269 eV Total energy + Delta-G solvation = -4027.550234 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.82270 -39.64733 -38.94763 -38.67781 -38.29711 -37.02488 -34.95114 -33.33047 -33.07042 -32.69900 -28.53256 -27.94807 -27.30572 -26.50636 -25.78526 -23.57423 -22.78983 -21.00451 -20.54653 -19.20508 -18.74920 -18.49039 -18.04432 -17.92836 -17.61938 -17.04397 -16.95653 -16.77244 -16.03408 -15.74749 -15.38675 -15.14466 -14.95543 -14.75658 -14.62379 -14.45951 -14.22069 -14.08615 -13.70651 -13.56276 -13.32744 -13.29624 -13.16898 -13.14005 -13.07340 -12.33472 -12.21706 -12.17223 -11.95079 -11.91089 -11.68427 -11.51875 -10.96509 -10.76196 -10.58858 -10.48464 -10.26021 -10.24258 -8.24786 -6.25551 -0.82541 -0.70017 -0.42229 1.09530 1.39330 1.41996 1.53035 1.78403 1.88635 2.23548 2.36726 2.38942 2.62743 2.75276 3.13077 3.27074 3.61425 3.80268 3.98288 4.03794 4.06056 4.17316 4.19980 4.39480 4.41348 4.47066 4.55519 4.63758 4.82750 4.88939 4.94613 4.97586 5.01330 5.06509 5.15988 5.30771 5.33786 5.44963 5.57906 5.78803 5.86440 6.09847 6.11302 6.37463 6.81008 7.40436 8.91649 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.013152 B = 0.004110 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.414156 B = 6810.437172 C = 7423.527256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.028 3.972 3 C -0.155 4.155 4 C -0.507 4.507 5 H 0.040 0.960 6 C 0.017 3.983 7 N -0.948 5.948 8 Si 0.937 3.063 9 H -0.285 1.285 10 H -0.323 1.323 11 H -0.206 1.206 12 C 0.147 3.853 13 N -1.105 6.105 14 S 2.710 3.290 15 O -0.975 6.975 16 O -0.970 6.970 17 C -0.662 4.662 18 C 0.013 3.987 19 C -0.134 4.134 20 C 0.019 3.981 21 C -0.235 4.235 22 C -0.003 4.003 23 C 0.059 3.941 24 O -0.318 6.318 25 C 0.524 3.476 26 O -0.487 6.487 27 H 0.062 0.938 28 H 0.038 0.962 29 H 0.043 0.957 30 H 0.056 0.944 31 H 0.028 0.972 32 H 0.078 0.922 33 H 0.261 0.739 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.427 0.573 37 H 0.172 0.828 38 H 0.185 0.815 39 H 0.164 0.836 40 H 0.155 0.845 41 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.356 0.732 19.145 19.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.026 3.974 3 C -0.211 4.211 4 C -0.546 4.546 5 H 0.058 0.942 6 C -0.180 4.180 7 N -0.588 5.588 8 Si 0.768 3.232 9 H -0.213 1.213 10 H -0.254 1.254 11 H -0.129 1.129 12 C 0.022 3.978 13 N -0.869 5.869 14 S 2.799 3.201 15 O -0.965 6.965 16 O -0.960 6.960 17 C -0.748 4.748 18 C -0.006 4.006 19 C -0.153 4.153 20 C 0.001 3.999 21 C -0.237 4.237 22 C -0.005 4.005 23 C -0.014 4.014 24 O -0.232 6.232 25 C 0.368 3.632 26 O -0.376 6.376 27 H 0.081 0.919 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.046 0.954 32 H 0.097 0.903 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.266 0.734 37 H 0.189 0.811 38 H 0.203 0.797 39 H 0.182 0.818 40 H 0.172 0.828 41 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 2.281 0.632 19.649 19.791 hybrid contribution 0.587 0.792 -1.161 1.523 sum 2.868 1.425 18.488 18.764 Atomic orbital electron populations 1.22256 0.96883 1.00792 1.00400 1.18633 0.93307 0.93207 0.92288 1.22370 1.01485 0.97005 1.00268 1.21106 1.33364 1.09880 0.90223 0.94185 1.25781 0.95620 1.01069 0.95572 1.70086 1.51238 1.38516 0.98939 0.86459 0.79368 0.80759 0.76612 1.21284 1.25377 1.12929 1.21193 0.98224 0.95539 0.82869 1.55323 1.79408 1.29729 1.22471 1.01331 0.73442 0.73119 0.72205 1.93572 1.73514 1.43673 1.85775 1.93580 1.80013 1.62568 1.59847 1.30072 1.25421 0.99168 1.20166 1.21727 0.97634 0.94568 0.86703 1.21773 0.92154 1.01445 0.99888 1.21564 1.01783 0.89102 0.87501 1.20935 0.95368 0.95644 1.11796 1.20405 0.93823 0.95632 0.90658 1.23271 0.82723 0.87163 1.08259 1.87248 1.21340 1.33627 1.81033 1.20642 0.85241 0.84374 0.72958 1.90864 1.14134 1.86985 1.45568 0.91892 0.94324 0.93768 0.92507 0.95403 0.90325 0.92986 0.91277 0.91295 0.73448 0.81072 0.79736 0.81803 0.82804 0.82344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.19 7.51 71.98 0.54 -4.65 16 2 C 0.03 1.04 0.52 -52.93 -0.03 1.01 16 3 C -0.15 -5.03 7.49 71.98 0.54 -4.49 16 4 C -0.51 -25.36 8.62 25.60 0.22 -25.14 16 5 H 0.04 2.23 7.99 -2.91 -0.02 2.21 16 6 C 0.02 0.90 5.34 84.66 0.45 1.35 16 7 N -0.95 -56.57 13.96 21.45 0.30 -56.27 16 8 Si 0.94 41.36 22.77 68.60 1.56 42.93 16 9 H -0.29 -12.38 7.11 99.48 0.71 -11.68 16 10 H -0.32 -15.13 7.11 99.48 0.71 -14.43 16 11 H -0.21 -7.67 4.61 99.48 0.46 -7.21 16 12 C 0.15 4.39 5.02 86.38 0.43 4.82 16 13 N -1.10 -24.79 5.42 -187.49 -1.02 -25.81 16 14 S 2.71 60.72 5.52 -56.49 -0.31 60.41 16 15 O -0.98 -27.44 16.50 -128.00 -2.11 -29.55 16 16 O -0.97 -23.52 17.54 -128.00 -2.24 -25.76 16 17 C -0.66 -13.00 5.82 22.16 0.13 -12.87 16 18 C 0.01 0.21 9.56 22.37 0.21 0.42 16 19 C -0.13 -1.73 10.02 22.24 0.22 -1.50 16 20 C 0.02 0.29 10.10 22.53 0.23 0.52 16 21 C -0.23 -4.93 6.27 -20.16 -0.13 -5.06 16 22 C 0.00 -0.07 6.11 -19.63 -0.12 -0.18 16 23 C 0.06 1.00 7.46 71.27 0.53 1.53 16 24 O -0.32 -7.29 11.13 -52.91 -0.59 -7.88 16 25 C 0.52 13.41 8.58 70.24 0.60 14.01 16 26 O -0.49 -15.26 18.04 19.62 0.35 -14.90 16 27 H 0.06 1.76 7.54 -2.39 -0.02 1.74 16 28 H 0.04 1.49 4.39 -2.39 -0.01 1.48 16 29 H 0.04 1.59 8.11 -2.39 -0.02 1.57 16 30 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.03 1.00 2.17 -2.39 -0.01 1.00 16 32 H 0.08 1.83 6.58 -2.39 -0.02 1.81 16 33 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 34 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.07 2.19 7.77 -2.38 -0.02 2.18 16 36 H 0.43 7.77 6.58 -96.73 -0.64 7.13 16 37 H 0.17 2.39 7.34 -2.91 -0.02 2.37 16 38 H 0.19 0.99 8.06 -2.91 -0.02 0.97 16 39 H 0.16 1.89 8.06 -2.91 -0.02 1.86 16 40 H 0.15 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.16 2.07 8.01 -2.39 -0.02 2.06 16 Total: -1.00 -74.25 343.44 -0.01 -74.26 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: 0.21 Total: 12.81 kcal Atomic # 6 Polarization: -34.06 SS G_CDS: 3.84 Total: -30.22 kcal Atomic # 7 Polarization: -81.36 SS G_CDS: -0.72 Total: -82.08 kcal Atomic # 8 Polarization: -73.51 SS G_CDS: -4.59 Total: -78.10 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 1.56 Total: 42.93 kcal Atomic # 16 Polarization: 60.72 SS G_CDS: -0.31 Total: 60.41 kcal Total: -74.25 -0.01 -74.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841542793.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.216 kcal (2) G-P(sol) polarization free energy of solvation -74.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds