Wall clock time and date at job start Tue Mar 31 2020 22:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 110.66030 * 2 1 4 4 C 1.54704 * 110.74116 * 236.59854 * 2 1 3 5 5 C 1.51678 * 101.90579 * 267.00689 * 4 2 1 6 6 C 1.37300 * 132.06162 * 164.12417 * 5 4 2 7 7 C 1.39812 * 119.85572 * 180.93584 * 6 5 4 8 8 C 1.47613 * 120.26616 * 180.02562 * 7 6 5 9 9 O 1.21579 * 119.99768 * 359.96878 * 8 7 6 10 10 N 1.34769 * 120.00086 * 179.97438 * 8 7 6 11 11 S 1.65600 * 120.00263 * 179.97438 * 10 8 7 12 12 O 1.42096 * 104.28156 * 181.06776 * 11 10 8 13 13 O 1.42108 * 104.27433 * 308.92411 * 11 10 8 14 14 C 1.81399 * 104.44926 * 64.99223 * 11 10 8 15 15 C 1.50697 * 109.47027 * 180.02562 * 14 11 10 16 16 H 1.08001 * 119.99976 * 0.02562 * 15 14 11 17 17 C 1.37881 * 120.00168 * 179.97438 * 15 14 11 18 18 N 1.31508 * 119.99873 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00007 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46970 * 90.00785 * 19 17 15 21 21 H 1.48506 * 109.47013 * 210.00063 * 19 17 15 22 22 H 1.48491 * 109.47592 * 330.00437 * 19 17 15 23 23 C 1.39755 * 119.47048 * 359.97438 * 7 6 5 24 24 C 1.37470 * 120.19870 * 0.09251 * 23 7 6 25 25 C 1.39182 * 106.99604 * 344.64846 * 5 4 2 26 26 O 1.35990 * 111.17282 * 358.83154 * 25 5 4 27 27 H 1.09000 * 109.47267 * 298.24497 * 1 2 3 28 28 H 1.09002 * 109.47538 * 58.25159 * 1 2 3 29 29 H 1.09004 * 109.47120 * 178.24565 * 1 2 3 30 30 H 1.09000 * 109.47077 * 181.75012 * 3 2 1 31 31 H 1.08997 * 109.47300 * 301.75161 * 3 2 1 32 32 H 1.09003 * 109.47291 * 61.75423 * 3 2 1 33 33 H 1.09000 * 110.93942 * 148.85339 * 4 2 1 34 34 H 1.08997 * 110.94595 * 25.16429 * 4 2 1 35 35 H 1.07998 * 120.07734 * 0.90551 * 6 5 4 36 36 H 0.97008 * 119.99819 * 359.97438 * 10 8 7 37 37 H 1.08997 * 109.47378 * 300.00467 * 14 11 10 38 38 H 1.09000 * 109.46814 * 60.00377 * 14 11 10 39 39 H 0.96998 * 120.00227 * 179.97438 * 18 17 15 40 40 H 1.08002 * 119.89819 * 179.80857 * 23 7 6 41 41 H 1.08000 * 119.78192 * 179.74241 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0698 1.4315 0.0000 4 6 2.0779 -0.7965 -1.2078 5 6 2.2612 -2.1798 -0.6133 6 6 2.4418 -3.4124 -1.1904 7 6 2.5672 -4.5472 -0.3833 8 6 2.7622 -5.8768 -0.9942 9 8 2.8138 -5.9883 -2.2037 10 7 2.8829 -6.9669 -0.2111 11 16 3.1011 -8.4586 -0.8964 12 8 3.1595 -9.3477 0.2106 13 8 2.0619 -8.5566 -1.8607 14 6 4.7178 -8.3501 -1.7118 15 6 5.0323 -9.6634 -2.3806 16 1 4.3295 -10.4814 -2.3215 17 6 6.2166 -9.8204 -3.0690 18 7 7.0720 -8.8242 -3.1415 19 14 6.6066 -11.4485 -3.8975 20 1 6.0882 -11.4324 -5.2891 21 1 8.0773 -11.6528 -3.9196 22 1 5.9644 -12.5544 -3.1428 23 6 2.5074 -4.4125 1.0064 24 6 2.3249 -3.1737 1.5739 25 6 2.2076 -2.0383 0.7703 26 8 2.0391 -0.7363 1.1247 27 1 -0.3634 0.4863 0.9053 28 1 -0.3634 0.5407 -0.8739 29 1 -0.3633 -1.0272 -0.0315 30 1 3.1591 1.4091 -0.0314 31 1 1.6920 1.9623 -0.8738 32 1 1.7429 1.9431 0.9053 33 1 3.0306 -0.3876 -1.5442 34 1 1.3542 -0.8153 -2.0227 35 1 2.4864 -3.5054 -2.2654 36 1 2.8420 -6.8778 0.7540 37 1 4.6950 -7.5579 -2.4601 38 1 5.4846 -8.1270 -0.9699 39 1 7.9053 -8.9347 -3.6254 40 1 2.6004 -5.2848 1.6363 41 1 2.2756 -3.0779 2.6485 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842792958.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:32 Heat of formation + Delta-G solvation = -122.215513 kcal Electronic energy + Delta-G solvation = -26797.843455 eV Core-core repulsion = 22770.261033 eV Total energy + Delta-G solvation = -4027.582423 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.73489 -39.93542 -37.49836 -36.21416 -35.16781 -34.29316 -34.21525 -33.34204 -31.86161 -30.53647 -29.04347 -27.94197 -27.02026 -24.35240 -23.50095 -22.17969 -21.31195 -20.94494 -19.26974 -18.09505 -17.53959 -17.24467 -16.54760 -16.21194 -15.95782 -15.67568 -15.26462 -14.83446 -14.61554 -14.56042 -14.26786 -14.18534 -14.01025 -13.51878 -13.30632 -12.96357 -12.82315 -12.60173 -12.52862 -12.46281 -12.16690 -12.10627 -11.89793 -11.48450 -11.45670 -11.29183 -11.18912 -11.16177 -10.97108 -10.90334 -10.64512 -10.48912 -10.09849 -9.80564 -9.22440 -9.16238 -8.69687 -8.47088 -6.31823 -4.42980 0.58382 1.03953 1.05203 2.52679 2.80741 3.16171 3.23353 3.28715 3.33943 3.56571 3.99194 4.04012 4.23359 4.33443 4.37938 4.52205 4.56154 4.60881 4.77379 4.91310 4.99598 5.06162 5.10159 5.16920 5.19487 5.22316 5.25867 5.31649 5.41233 5.48181 5.59144 5.71757 5.72773 5.87176 6.04179 6.06708 6.23325 6.60543 6.78158 6.83080 7.00939 7.43001 7.73408 7.78216 8.58184 9.24241 10.79995 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.022359 B = 0.002567 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.000401 B =10903.539763 C =11488.203851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.100 3.900 3 C -0.142 4.142 4 C -0.100 4.100 5 C -0.185 4.185 6 C -0.003 4.003 7 C -0.166 4.166 8 C 0.583 3.417 9 O -0.485 6.485 10 N -1.058 6.058 11 S 2.555 3.445 12 O -0.968 6.968 13 O -0.951 6.951 14 C -0.404 4.404 15 C -0.535 4.535 16 H 0.071 0.929 17 C 0.077 3.923 18 N -0.877 5.877 19 Si 0.907 3.093 20 H -0.273 1.273 21 H -0.281 1.281 22 H -0.266 1.266 23 C -0.044 4.044 24 C -0.147 4.147 25 C 0.137 3.863 26 O -0.294 6.294 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.143 0.857 36 H 0.422 0.578 37 H 0.099 0.901 38 H 0.086 0.914 39 H 0.269 0.731 40 H 0.139 0.861 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.631 21.081 8.872 24.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.062 3.938 3 C -0.199 4.199 4 C -0.137 4.137 5 C -0.186 4.186 6 C -0.022 4.022 7 C -0.171 4.171 8 C 0.371 3.629 9 O -0.358 6.358 10 N -0.817 5.817 11 S 2.657 3.343 12 O -0.959 6.959 13 O -0.942 6.942 14 C -0.541 4.541 15 C -0.574 4.574 16 H 0.089 0.911 17 C -0.129 4.129 18 N -0.513 5.513 19 Si 0.733 3.267 20 H -0.198 1.198 21 H -0.206 1.206 22 H -0.191 1.191 23 C -0.063 4.063 24 C -0.166 4.166 25 C 0.090 3.910 26 O -0.207 6.207 27 H 0.088 0.912 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.161 0.839 36 H 0.257 0.743 37 H 0.117 0.883 38 H 0.104 0.896 39 H 0.078 0.922 40 H 0.157 0.843 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -10.076 20.510 8.203 24.279 hybrid contribution 0.790 -0.364 -0.039 0.871 sum -9.286 20.145 8.164 23.637 Atomic orbital electron populations 1.22215 0.93149 1.03428 1.03325 1.22820 0.94513 0.92985 0.83434 1.21845 1.02149 0.92502 1.03375 1.21906 1.03038 0.90627 0.98119 1.20658 1.08704 0.95392 0.93877 1.20412 0.91909 0.88955 1.00953 1.19718 1.10268 0.93289 0.93813 1.17919 0.74412 0.84257 0.86330 1.90984 1.45895 1.85999 1.12882 1.55433 1.79735 1.26960 1.19593 1.07117 0.80614 0.71647 0.74901 1.93520 1.89029 1.60420 1.52909 1.93531 1.55332 1.83496 1.61797 1.27602 1.10934 1.07198 1.08319 1.20287 1.05889 0.95131 1.36099 0.91108 1.24921 0.95276 0.97645 0.95100 1.69955 1.09537 1.31416 1.40374 0.86337 0.77752 0.82600 0.80047 1.19837 1.20606 1.19066 1.21060 0.94501 0.97096 0.93616 1.20149 1.07419 0.88928 1.00102 1.19831 0.93332 0.84963 0.92840 1.86851 1.79361 1.16253 1.38285 0.91216 0.90443 0.91632 0.91252 0.90124 0.91165 0.88687 0.88614 0.83888 0.74306 0.88296 0.89630 0.92153 0.84300 0.84581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.03 8.84 37.16 0.33 -0.70 16 2 C 0.10 0.75 1.26 -89.73 -0.11 0.63 16 3 C -0.14 -0.75 8.96 37.15 0.33 -0.42 16 4 C -0.10 -0.80 6.19 -26.50 -0.16 -0.96 16 5 C -0.19 -2.02 6.25 -104.13 -0.65 -2.67 16 6 C 0.00 -0.04 9.58 -39.33 -0.38 -0.42 16 7 C -0.17 -2.25 5.88 -104.92 -0.62 -2.87 16 8 C 0.58 10.04 7.51 -12.44 -0.09 9.95 16 9 O -0.49 -10.23 14.46 -11.82 -0.17 -10.40 16 10 N -1.06 -17.37 5.55 30.47 0.17 -17.20 16 11 S 2.55 55.65 5.03 -107.50 -0.54 55.11 16 12 O -0.97 -22.06 18.08 -57.54 -1.04 -23.10 16 13 O -0.95 -23.77 17.04 -64.79 -1.10 -24.88 16 14 C -0.40 -10.10 5.64 36.00 0.20 -9.90 16 15 C -0.53 -15.05 9.13 -34.44 -0.31 -15.36 16 16 H 0.07 1.94 7.71 -52.49 -0.40 1.54 16 17 C 0.08 2.16 5.46 -17.82 -0.10 2.07 16 18 N -0.88 -25.22 13.29 55.43 0.74 -24.48 16 19 Si 0.91 21.25 29.54 -169.99 -5.02 16.22 16 20 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 23 C -0.04 -0.47 9.52 -39.29 -0.37 -0.84 16 24 C -0.15 -1.47 10.05 -39.36 -0.40 -1.87 16 25 C 0.14 1.49 6.95 -38.73 -0.27 1.22 16 26 O -0.29 -3.01 10.51 -19.71 -0.21 -3.22 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.49 8.12 -51.93 -0.42 0.07 16 30 H 0.07 0.39 8.12 -51.93 -0.42 -0.03 16 31 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.09 0.68 7.91 -51.93 -0.41 0.27 16 34 H 0.10 0.63 7.92 -51.93 -0.41 0.22 16 35 H 0.14 1.81 7.66 -52.49 -0.40 1.40 16 36 H 0.42 5.04 6.83 -34.47 -0.24 4.80 16 37 H 0.10 2.59 7.19 -51.93 -0.37 2.22 16 38 H 0.09 2.06 8.14 -51.92 -0.42 1.64 16 39 H 0.27 7.19 8.31 -40.82 -0.34 6.86 16 40 H 0.14 1.08 6.40 -52.49 -0.34 0.75 16 41 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 360.95 15.07 5.44 5.44 Total: -1.00 -36.71 360.95 -9.43 -46.14 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -5.09 Total: 2.51 kcal Atomic # 6 Polarization: -19.54 SS G_CDS: -2.60 Total: -22.14 kcal Atomic # 7 Polarization: -42.59 SS G_CDS: 0.91 Total: -41.69 kcal Atomic # 8 Polarization: -59.07 SS G_CDS: -2.52 Total: -61.59 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: 55.65 SS G_CDS: -0.54 Total: 55.11 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -36.71 -9.43 -46.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842792958.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.074 kcal (2) G-P(sol) polarization free energy of solvation -36.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds