Wall clock time and date at job start Tue Mar 31 2020 22:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 110.66030 * 2 1 4 4 C 1.54704 * 110.74116 * 236.59854 * 2 1 3 5 5 C 1.51678 * 101.90579 * 267.00689 * 4 2 1 6 6 C 1.37300 * 132.06162 * 164.12417 * 5 4 2 7 7 C 1.39812 * 119.85572 * 180.93584 * 6 5 4 8 8 C 1.47613 * 120.26616 * 180.02562 * 7 6 5 9 9 O 1.21579 * 119.99768 * 359.96878 * 8 7 6 10 10 N 1.34769 * 120.00086 * 179.97438 * 8 7 6 11 11 S 1.65600 * 120.00263 * 179.97438 * 10 8 7 12 12 O 1.42096 * 104.28156 * 181.06776 * 11 10 8 13 13 O 1.42108 * 104.27433 * 308.92411 * 11 10 8 14 14 C 1.81399 * 104.44926 * 64.99223 * 11 10 8 15 15 C 1.50697 * 109.47027 * 180.02562 * 14 11 10 16 16 H 1.08001 * 119.99976 * 0.02562 * 15 14 11 17 17 C 1.37881 * 120.00168 * 179.97438 * 15 14 11 18 18 N 1.31508 * 119.99873 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00007 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46970 * 90.00785 * 19 17 15 21 21 H 1.48506 * 109.47013 * 210.00063 * 19 17 15 22 22 H 1.48491 * 109.47592 * 330.00437 * 19 17 15 23 23 C 1.39755 * 119.47048 * 359.97438 * 7 6 5 24 24 C 1.37470 * 120.19870 * 0.09251 * 23 7 6 25 25 C 1.39182 * 106.99604 * 344.64846 * 5 4 2 26 26 O 1.35990 * 111.17282 * 358.83154 * 25 5 4 27 27 H 1.09000 * 109.47267 * 298.24497 * 1 2 3 28 28 H 1.09002 * 109.47538 * 58.25159 * 1 2 3 29 29 H 1.09004 * 109.47120 * 178.24565 * 1 2 3 30 30 H 1.09000 * 109.47077 * 181.75012 * 3 2 1 31 31 H 1.08997 * 109.47300 * 301.75161 * 3 2 1 32 32 H 1.09003 * 109.47291 * 61.75423 * 3 2 1 33 33 H 1.09000 * 110.93942 * 148.85339 * 4 2 1 34 34 H 1.08997 * 110.94595 * 25.16429 * 4 2 1 35 35 H 1.07998 * 120.07734 * 0.90551 * 6 5 4 36 36 H 0.97008 * 119.99819 * 359.97438 * 10 8 7 37 37 H 1.08997 * 109.47378 * 300.00467 * 14 11 10 38 38 H 1.09000 * 109.46814 * 60.00377 * 14 11 10 39 39 H 0.96998 * 120.00227 * 179.97438 * 18 17 15 40 40 H 1.08002 * 119.89819 * 179.80857 * 23 7 6 41 41 H 1.08000 * 119.78192 * 179.74241 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0698 1.4315 0.0000 4 6 2.0779 -0.7965 -1.2078 5 6 2.2612 -2.1798 -0.6133 6 6 2.4418 -3.4124 -1.1904 7 6 2.5672 -4.5472 -0.3833 8 6 2.7622 -5.8768 -0.9942 9 8 2.8138 -5.9883 -2.2037 10 7 2.8829 -6.9669 -0.2111 11 16 3.1011 -8.4586 -0.8964 12 8 3.1595 -9.3477 0.2106 13 8 2.0619 -8.5566 -1.8607 14 6 4.7178 -8.3501 -1.7118 15 6 5.0323 -9.6634 -2.3806 16 1 4.3295 -10.4814 -2.3215 17 6 6.2166 -9.8204 -3.0690 18 7 7.0720 -8.8242 -3.1415 19 14 6.6066 -11.4485 -3.8975 20 1 6.0882 -11.4324 -5.2891 21 1 8.0773 -11.6528 -3.9196 22 1 5.9644 -12.5544 -3.1428 23 6 2.5074 -4.4125 1.0064 24 6 2.3249 -3.1737 1.5739 25 6 2.2076 -2.0383 0.7703 26 8 2.0391 -0.7363 1.1247 27 1 -0.3634 0.4863 0.9053 28 1 -0.3634 0.5407 -0.8739 29 1 -0.3633 -1.0272 -0.0315 30 1 3.1591 1.4091 -0.0314 31 1 1.6920 1.9623 -0.8738 32 1 1.7429 1.9431 0.9053 33 1 3.0306 -0.3876 -1.5442 34 1 1.3542 -0.8153 -2.0227 35 1 2.4864 -3.5054 -2.2654 36 1 2.8420 -6.8778 0.7540 37 1 4.6950 -7.5579 -2.4601 38 1 5.4846 -8.1270 -0.9699 39 1 7.9053 -8.9347 -3.6254 40 1 2.6004 -5.2848 1.6363 41 1 2.2756 -3.0779 2.6485 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842792958.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:31 Heat of formation + Delta-G solvation = -148.662521 kcal Electronic energy + Delta-G solvation = -26798.990284 eV Core-core repulsion = 22770.261033 eV Total energy + Delta-G solvation = -4028.729251 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.51595 -41.25069 -38.50170 -38.03683 -37.07001 -35.73639 -35.42970 -34.90738 -32.64377 -31.47581 -31.10061 -28.39062 -27.74839 -25.72101 -25.31955 -23.01812 -22.38480 -21.73888 -20.84376 -19.50073 -19.00353 -18.36894 -18.29694 -17.53928 -16.98896 -16.89631 -16.52070 -16.43537 -16.22021 -15.97894 -15.38122 -14.94903 -14.87997 -14.52522 -14.30570 -14.14499 -13.99271 -13.72040 -13.61208 -13.49753 -13.48801 -13.21729 -13.19980 -13.10955 -12.91936 -12.75146 -12.69862 -12.55577 -12.13386 -12.09869 -11.85335 -11.83456 -11.69086 -11.50192 -11.08900 -10.79975 -10.07243 -9.33898 -8.43169 -6.62546 -0.76950 -0.41259 0.20104 1.33743 1.37158 1.39761 1.51349 1.57341 2.08018 2.29663 2.58582 2.75339 2.91008 3.07546 3.33593 3.37050 3.47029 3.73237 3.81670 3.90615 3.97700 4.02669 4.13438 4.39938 4.59274 4.63765 4.64866 4.72129 4.74806 4.79482 4.83076 4.87554 4.95405 5.03336 5.13713 5.19903 5.20887 5.27905 5.28559 5.41963 5.66663 5.72783 6.05767 6.41636 6.48185 7.09190 8.69956 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.022359 B = 0.002567 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.000401 B =10903.539763 C =11488.203851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.094 3.906 3 C -0.139 4.139 4 C -0.101 4.101 5 C -0.192 4.192 6 C -0.016 4.016 7 C -0.188 4.188 8 C 0.583 3.417 9 O -0.532 6.532 10 N -1.040 6.040 11 S 2.602 3.398 12 O -0.975 6.975 13 O -0.983 6.983 14 C -0.421 4.421 15 C -0.568 4.568 16 H 0.069 0.931 17 C 0.024 3.976 18 N -0.909 5.909 19 Si 0.969 3.031 20 H -0.267 1.267 21 H -0.267 1.267 22 H -0.258 1.258 23 C -0.035 4.035 24 C -0.146 4.146 25 C 0.136 3.864 26 O -0.303 6.303 27 H 0.074 0.926 28 H 0.098 0.902 29 H 0.050 0.950 30 H 0.064 0.936 31 H 0.102 0.898 32 H 0.074 0.926 33 H 0.103 0.897 34 H 0.109 0.891 35 H 0.132 0.868 36 H 0.444 0.556 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.275 0.725 40 H 0.168 0.832 41 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.227 22.317 10.266 26.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.058 3.942 3 C -0.196 4.196 4 C -0.138 4.138 5 C -0.193 4.193 6 C -0.035 4.035 7 C -0.193 4.193 8 C 0.373 3.627 9 O -0.408 6.408 10 N -0.805 5.805 11 S 2.702 3.298 12 O -0.965 6.965 13 O -0.973 6.973 14 C -0.556 4.556 15 C -0.606 4.606 16 H 0.088 0.912 17 C -0.179 4.179 18 N -0.545 5.545 19 Si 0.790 3.210 20 H -0.192 1.192 21 H -0.191 1.191 22 H -0.182 1.182 23 C -0.053 4.053 24 C -0.164 4.164 25 C 0.090 3.910 26 O -0.217 6.217 27 H 0.093 0.907 28 H 0.116 0.884 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.120 0.880 32 H 0.093 0.907 33 H 0.121 0.879 34 H 0.128 0.872 35 H 0.150 0.850 36 H 0.284 0.716 37 H 0.096 0.904 38 H 0.105 0.895 39 H 0.084 0.916 40 H 0.186 0.814 41 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -10.660 21.750 9.632 26.067 hybrid contribution 0.921 -0.545 -0.384 1.137 sum -9.739 21.206 9.248 25.101 Atomic orbital electron populations 1.22231 0.92200 1.02873 1.04627 1.23123 0.95296 0.93649 0.82154 1.21889 1.01917 0.91154 1.04664 1.22047 1.03972 0.88961 0.98813 1.20884 1.08028 0.95857 0.94505 1.20415 0.92745 0.89713 1.00605 1.19496 1.13440 0.91131 0.95239 1.18533 0.72989 0.85375 0.85797 1.90960 1.48251 1.86536 1.15022 1.54847 1.79334 1.25335 1.20983 1.05401 0.78300 0.72130 0.73943 1.93502 1.88653 1.61749 1.52604 1.93489 1.55628 1.84714 1.63472 1.27663 1.14190 1.05425 1.08329 1.20734 1.06470 0.96381 1.37063 0.91243 1.25895 0.95058 1.01411 0.95554 1.70041 1.10048 1.33380 1.41047 0.85394 0.78297 0.78228 0.79058 1.19181 1.19107 1.18194 1.21342 0.93001 0.98616 0.92378 1.20472 1.06273 0.88208 1.01486 1.20132 0.92300 0.85656 0.92956 1.86854 1.79272 1.15911 1.39639 0.90681 0.88377 0.93131 0.91654 0.87955 0.90712 0.87923 0.87243 0.84962 0.71583 0.90374 0.89483 0.91638 0.81436 0.81787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 8.84 71.98 0.64 -1.05 16 2 C 0.09 1.21 1.26 -10.21 -0.01 1.20 16 3 C -0.14 -1.13 8.96 71.98 0.64 -0.48 16 4 C -0.10 -1.46 6.19 30.74 0.19 -1.27 16 5 C -0.19 -4.02 6.25 -19.55 -0.12 -4.15 16 6 C -0.02 -0.40 9.58 22.43 0.21 -0.19 16 7 C -0.19 -5.06 5.88 -20.06 -0.12 -5.17 16 8 C 0.58 20.45 7.51 86.72 0.65 21.10 16 9 O -0.53 -23.55 14.46 12.40 0.18 -23.37 16 10 N -1.04 -33.89 5.55 -175.77 -0.98 -34.86 16 11 S 2.60 114.62 5.03 -56.49 -0.28 114.34 16 12 O -0.97 -43.82 18.08 -127.65 -2.31 -46.13 16 13 O -0.98 -50.05 17.04 -120.72 -2.06 -52.11 16 14 C -0.42 -21.85 5.64 71.24 0.40 -21.44 16 15 C -0.57 -32.73 9.13 25.60 0.23 -32.49 16 16 H 0.07 3.89 7.71 -2.91 -0.02 3.87 16 17 C 0.02 1.37 5.46 84.66 0.46 1.83 16 18 N -0.91 -53.30 13.29 21.45 0.28 -53.02 16 19 Si 0.97 43.56 29.54 68.60 2.03 45.59 16 20 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 21 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 22 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 23 C -0.04 -0.68 9.52 22.46 0.21 -0.46 16 24 C -0.15 -2.55 10.05 22.42 0.23 -2.33 16 25 C 0.14 2.73 6.95 22.82 0.16 2.89 16 26 O -0.30 -5.59 10.51 -93.44 -0.98 -6.57 16 27 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.05 0.68 8.12 -2.39 -0.02 0.66 16 30 H 0.06 0.60 8.12 -2.39 -0.02 0.58 16 31 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.10 1.32 7.91 -2.39 -0.02 1.30 16 34 H 0.11 1.26 7.92 -2.39 -0.02 1.24 16 35 H 0.13 3.58 7.66 -2.91 -0.02 3.56 16 36 H 0.44 9.89 6.83 -96.74 -0.66 9.23 16 37 H 0.08 4.34 7.19 -2.39 -0.02 4.32 16 38 H 0.09 4.36 8.14 -2.39 -0.02 4.34 16 39 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 40 H 0.17 2.10 6.40 -2.91 -0.02 2.08 16 41 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -80.84 360.95 0.08 -80.76 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: 0.41 Total: 17.38 kcal Atomic # 6 Polarization: -45.80 SS G_CDS: 3.78 Total: -42.02 kcal Atomic # 7 Polarization: -87.19 SS G_CDS: -0.69 Total: -87.88 kcal Atomic # 8 Polarization: -123.01 SS G_CDS: -5.17 Total: -128.18 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: 114.62 SS G_CDS: -0.28 Total: 114.34 kcal Total: -80.84 0.08 -80.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842792958.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.900 kcal (2) G-P(sol) polarization free energy of solvation -80.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds