Wall clock time and date at job start Tue Mar 31 2020 22:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86797 * 120.00094 * 2 1 4 4 H 1.48497 * 109.47384 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47334 * 300.00284 * 3 2 1 6 6 H 1.48498 * 109.47359 * 60.00201 * 3 2 1 7 7 C 1.38652 * 120.00195 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00198 * 180.02562 * 7 2 1 9 9 O 1.34835 * 119.99915 * 359.97438 * 7 2 1 10 10 C 1.35743 * 117.00226 * 185.40372 * 9 7 2 11 11 C 1.38954 * 120.03470 * 185.83284 * 10 9 7 12 12 C 1.38120 * 120.06985 * 180.02562 * 11 10 9 13 13 C 1.38200 * 120.14489 * 359.95126 * 12 11 10 14 14 C 1.38928 * 120.06055 * 0.02562 * 13 12 11 15 15 N 1.39929 * 120.03091 * 180.02562 * 14 13 12 16 16 C 1.34770 * 119.99986 * 326.56221 * 15 14 13 17 17 O 1.21284 * 120.00389 * 354.67822 * 16 15 14 18 18 C 1.50699 * 119.99831 * 174.66958 * 16 15 14 19 19 H 1.09003 * 109.29960 * 60.26937 * 18 16 15 20 20 C 1.52779 * 109.52287 * 300.48730 * 18 16 15 21 21 C 1.52593 * 110.70096 * 169.90256 * 20 18 16 22 22 C 1.53031 * 109.98634 * 69.99145 * 21 20 18 23 23 S 1.81668 * 109.00053 * 296.35626 * 22 21 20 24 24 O 1.42097 * 108.66544 * 299.96309 * 23 22 21 25 25 O 1.42103 * 108.66448 * 168.62649 * 23 22 21 26 26 C 1.53040 * 109.38562 * 180.02562 * 18 16 15 27 27 C 1.38735 * 120.03379 * 6.07663 * 10 9 7 28 28 H 0.97001 * 120.00340 * 359.97438 * 1 2 3 29 29 H 1.07997 * 119.96267 * 0.02562 * 11 10 9 30 30 H 1.08005 * 119.93032 * 179.97438 * 12 11 10 31 31 H 1.07997 * 119.97257 * 180.02562 * 13 12 11 32 32 H 0.97003 * 119.99733 * 146.56784 * 15 14 13 33 33 H 1.09000 * 109.20864 * 49.59418 * 20 18 16 34 34 H 1.08994 * 109.19045 * 290.20002 * 20 18 16 35 35 H 1.09000 * 109.38416 * 309.84049 * 21 20 18 36 36 H 1.08993 * 109.38657 * 190.15273 * 21 20 18 37 37 H 1.09004 * 109.55425 * 176.49753 * 22 21 20 38 38 H 1.09002 * 109.62922 * 56.25440 * 22 21 20 39 39 H 1.09001 * 109.54772 * 63.95327 * 26 18 16 40 40 H 1.08997 * 109.55245 * 303.75990 * 26 18 16 41 41 H 1.08004 * 120.07152 * 0.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7095 1.3464 -0.0006 5 1 1.8908 2.3965 -1.2125 6 1 1.8909 2.3964 1.2125 7 6 2.0088 -1.2007 -0.0005 8 1 3.0888 -1.2007 -0.0001 9 8 1.3347 -2.3685 -0.0005 10 6 2.0694 -3.5042 0.1128 11 6 1.4541 -4.7449 -0.0017 12 6 2.2009 -5.9010 0.1140 13 6 3.5618 -5.8282 0.3430 14 6 4.1829 -4.5908 0.4580 15 7 5.5610 -4.5178 0.6894 16 6 6.1701 -5.4609 1.4350 17 8 5.5114 -6.3179 1.9851 18 6 7.6695 -5.4506 1.5850 19 1 7.9791 -4.5125 2.0457 20 6 8.3212 -5.5783 0.2091 21 6 9.8229 -5.3224 0.2977 22 6 10.5075 -6.4756 1.0347 23 16 9.8936 -6.5328 2.7436 24 8 10.1994 -5.2986 3.3781 25 8 10.3231 -7.7486 3.3407 26 6 8.0990 -6.6197 2.4743 27 6 3.4345 -3.4276 0.3482 28 1 -0.4851 0.8400 0.0004 29 1 0.3909 -4.8051 -0.1815 30 1 1.7203 -6.8641 0.0250 31 1 4.1431 -6.7340 0.4326 32 1 6.0780 -3.7883 0.3131 33 1 7.8725 -4.8523 -0.4689 34 1 8.1503 -6.5833 -0.1764 35 1 10.0002 -4.3922 0.8376 36 1 10.2357 -5.2397 -0.7076 37 1 11.5858 -6.3165 1.0396 38 1 10.2799 -7.4167 0.5339 39 1 7.8485 -7.5611 1.9854 40 1 7.5833 -6.5578 3.4326 41 1 3.9143 -2.4646 0.4420 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845221120.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:28 Heat of formation + Delta-G solvation = -107.892390 kcal Electronic energy + Delta-G solvation = -26761.516180 eV Core-core repulsion = 22734.554854 eV Total energy + Delta-G solvation = -4026.961325 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.65229 -38.92096 -37.64458 -37.00298 -36.41019 -36.33859 -34.38201 -32.48705 -32.26575 -29.56857 -28.74205 -28.04981 -25.50503 -24.98044 -22.48728 -21.92203 -21.54038 -20.01120 -19.27078 -18.24139 -18.00144 -17.41344 -16.87591 -16.19112 -16.06116 -15.77110 -15.71515 -15.23984 -15.09961 -14.56685 -14.39931 -14.03747 -13.91566 -13.80061 -13.61421 -13.42463 -13.05354 -12.59832 -12.46719 -12.43861 -12.39061 -12.04573 -11.92805 -11.81045 -11.63426 -11.56211 -11.22732 -11.19386 -11.01680 -10.87404 -10.70856 -10.49020 -9.99131 -9.72434 -9.47912 -8.87402 -7.83207 -7.24279 -6.50760 -4.10766 -0.40740 1.82741 2.21567 2.28185 2.66223 3.02969 3.07746 3.08733 3.14056 3.24667 3.46909 3.87293 3.90602 4.01182 4.13411 4.20155 4.37507 4.51021 4.60577 4.68313 4.90184 4.97165 5.04038 5.09411 5.20719 5.26821 5.33456 5.47131 5.55033 5.63148 5.89796 5.97505 6.14512 6.19088 6.54315 6.85688 6.89136 7.04517 7.22396 7.34597 7.54921 7.71540 7.92906 8.12901 8.94543 9.64200 10.67239 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.016108 B = 0.002610 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.828355 B =10727.261571 C =11853.217340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.040 3.960 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.393 4.393 8 H 0.091 0.909 9 O -0.175 6.175 10 C 0.168 3.832 11 C -0.199 4.199 12 C -0.063 4.063 13 C -0.207 4.207 14 C 0.178 3.822 15 N -0.666 5.666 16 C 0.520 3.480 17 O -0.512 6.512 18 C -0.097 4.097 19 H 0.121 0.879 20 C -0.137 4.137 21 C -0.108 4.108 22 C -0.606 4.606 23 S 2.419 3.581 24 O -0.934 6.934 25 O -0.940 6.940 26 C -0.585 4.585 27 C -0.255 4.255 28 H 0.270 0.730 29 H 0.119 0.881 30 H 0.116 0.884 31 H 0.118 0.882 32 H 0.407 0.593 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.141 0.859 40 H 0.145 0.855 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.355 -10.493 -1.520 22.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.469 4.469 8 H 0.108 0.892 9 O -0.078 6.078 10 C 0.114 3.886 11 C -0.218 4.218 12 C -0.082 4.082 13 C -0.227 4.227 14 C 0.085 3.915 15 N -0.311 5.311 16 C 0.306 3.694 17 O -0.386 6.386 18 C -0.119 4.119 19 H 0.138 0.862 20 C -0.174 4.174 21 C -0.146 4.146 22 C -0.735 4.735 23 S 2.601 3.399 24 O -0.932 6.932 25 O -0.937 6.937 26 C -0.714 4.714 27 C -0.277 4.277 28 H 0.080 0.920 29 H 0.137 0.863 30 H 0.134 0.866 31 H 0.136 0.864 32 H 0.243 0.757 33 H 0.112 0.888 34 H 0.104 0.896 35 H 0.108 0.892 36 H 0.112 0.888 37 H 0.154 0.846 38 H 0.153 0.847 39 H 0.160 0.840 40 H 0.163 0.837 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 19.984 -10.908 -0.331 22.770 hybrid contribution 0.293 1.138 -0.821 1.434 sum 20.277 -9.770 -1.151 22.537 Atomic orbital electron populations 1.70041 1.05970 1.27647 1.45875 1.25293 0.95844 0.98852 0.96502 0.85652 0.79027 0.80413 0.78319 1.19171 1.20115 1.20112 1.21315 0.91676 0.80834 1.53080 0.89175 1.84023 1.33967 1.11399 1.78433 1.19084 0.89510 0.88131 0.91904 1.20270 1.00177 0.90008 1.11390 1.20530 0.93152 0.96967 0.97541 1.20511 0.95201 0.95756 1.11268 1.17395 0.81432 0.94058 0.98612 1.43458 1.07879 1.28170 1.51548 1.20218 0.89205 0.81696 0.78325 1.90740 1.66007 1.36708 1.45154 1.21094 0.94159 0.99633 0.97062 0.86151 1.21813 0.95070 1.05223 0.95314 1.21270 0.93725 0.96568 1.03044 1.30270 1.11781 1.08052 1.23441 1.08026 0.78483 0.75252 0.78109 1.93603 1.82507 1.44730 1.72314 1.93611 1.79665 1.46406 1.74062 1.30189 1.24571 1.06597 1.10081 1.20822 0.94429 0.97294 1.15151 0.91988 0.86330 0.86593 0.86408 0.75706 0.88772 0.89628 0.89238 0.88799 0.84622 0.84689 0.84036 0.83702 0.85175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.73 13.67 55.48 0.76 -23.97 16 2 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 3 Si 0.94 19.82 29.55 -169.99 -5.02 14.80 16 4 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 5 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 6 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 7 C -0.39 -10.59 9.44 30.89 0.29 -10.30 16 8 H 0.09 2.22 5.30 -52.49 -0.28 1.94 16 9 O -0.18 -4.85 9.76 0.05 0.00 -4.85 16 10 C 0.17 3.94 6.64 -39.13 -0.26 3.68 16 11 C -0.20 -4.13 9.99 -39.36 -0.39 -4.52 16 12 C -0.06 -1.14 10.03 -39.64 -0.40 -1.54 16 13 C -0.21 -3.73 8.66 -39.34 -0.34 -4.07 16 14 C 0.18 3.17 6.27 -83.72 -0.53 2.64 16 15 N -0.67 -8.77 5.09 -9.88 -0.05 -8.82 16 16 C 0.52 6.52 6.90 -10.99 -0.08 6.44 16 17 O -0.51 -8.38 13.63 5.55 0.08 -8.30 16 18 C -0.10 -0.75 2.36 -91.86 -0.22 -0.96 16 19 H 0.12 0.75 8.02 -51.93 -0.42 0.34 16 20 C -0.14 -0.67 4.92 -27.05 -0.13 -0.80 16 21 C -0.11 -0.39 5.73 -26.92 -0.15 -0.54 16 22 C -0.61 -2.24 6.35 37.17 0.24 -2.01 16 23 S 2.42 17.27 5.31 -107.50 -0.57 16.70 16 24 O -0.93 -9.77 17.95 -57.81 -1.04 -10.80 16 25 O -0.94 -10.25 18.10 -57.81 -1.05 -11.29 16 26 C -0.59 -4.32 4.94 37.18 0.18 -4.14 16 27 C -0.26 -5.27 9.04 -39.21 -0.35 -5.62 16 28 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 30 H 0.12 1.74 8.06 -52.48 -0.42 1.31 16 31 H 0.12 2.04 6.42 -52.49 -0.34 1.70 16 32 H 0.41 3.97 8.29 -40.82 -0.34 3.63 16 33 H 0.09 0.40 7.37 -51.93 -0.38 0.02 16 34 H 0.09 0.36 8.09 -51.93 -0.42 -0.06 16 35 H 0.09 0.31 8.02 -51.93 -0.42 -0.11 16 36 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 37 H 0.14 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.13 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.14 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.14 1.19 7.99 -51.93 -0.42 0.78 16 41 H 0.13 2.63 5.72 -52.48 -0.30 2.33 16 LS Contribution 353.34 15.07 5.32 5.32 Total: -1.00 -38.15 353.34 -8.78 -46.93 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -4.98 Total: 5.05 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: -2.24 Total: -20.77 kcal Atomic # 7 Polarization: -33.50 SS G_CDS: 0.71 Total: -32.79 kcal Atomic # 8 Polarization: -33.25 SS G_CDS: -2.01 Total: -35.25 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Atomic # 16 Polarization: 17.27 SS G_CDS: -0.57 Total: 16.70 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -38.15 -8.78 -46.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845221120.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.959 kcal (2) G-P(sol) polarization free energy of solvation -38.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds