Wall clock time and date at job start Tue Mar 31 2020 22:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86806 * 119.99936 * 2 1 4 4 H 1.48496 * 109.47084 * 240.00047 * 3 2 1 5 5 H 1.48500 * 109.46959 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47169 * 119.99856 * 3 2 1 7 7 C 1.38653 * 120.00424 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00122 * 180.02562 * 7 2 1 9 9 O 1.34830 * 119.99975 * 359.97438 * 7 2 1 10 10 C 1.35749 * 117.00251 * 185.05738 * 9 7 2 11 11 C 1.38873 * 120.06762 * 354.46662 * 10 9 7 12 12 C 1.38099 * 119.93081 * 180.02562 * 11 10 9 13 13 C 1.38301 * 120.06779 * 0.02562 * 12 11 10 14 14 C 1.50709 * 119.93050 * 179.97438 * 13 12 11 15 15 N 1.46496 * 109.47277 * 89.99715 * 14 13 12 16 16 C 1.34771 * 120.00060 * 179.72372 * 15 14 13 17 17 O 1.21280 * 119.99930 * 0.27677 * 16 15 14 18 18 C 1.50705 * 120.00067 * 180.27508 * 16 15 14 19 19 H 1.09003 * 110.27991 * 27.88990 * 18 16 15 20 20 C 1.54160 * 110.31747 * 150.00168 * 18 16 15 21 21 C 1.53876 * 108.70320 * 146.81287 * 20 18 16 22 22 C 1.55040 * 106.62324 * 312.81749 * 21 20 18 23 23 S 1.82919 * 110.31975 * 265.66465 * 18 16 15 24 24 O 1.42099 * 109.35050 * 352.36991 * 23 18 16 25 25 O 1.42099 * 109.35060 * 125.57296 * 23 18 16 26 26 C 1.38298 * 120.14009 * 0.24760 * 13 12 11 27 27 C 1.38095 * 120.06857 * 359.45676 * 26 13 12 28 28 H 0.96997 * 120.00145 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.03705 * 0.02562 * 11 10 9 30 30 H 1.08005 * 119.97050 * 179.97438 * 12 11 10 31 31 H 1.08999 * 109.46682 * 329.99675 * 14 13 12 32 32 H 1.08994 * 109.46936 * 210.00103 * 14 13 12 33 33 H 0.97008 * 119.99846 * 359.97438 * 15 14 13 34 34 H 1.09004 * 109.65105 * 266.66521 * 20 18 16 35 35 H 1.09003 * 109.65069 * 26.96113 * 20 18 16 36 36 H 1.09002 * 110.02991 * 72.11131 * 21 20 18 37 37 H 1.09001 * 110.02609 * 193.52702 * 21 20 18 38 38 H 1.09001 * 110.79193 * 160.70327 * 22 21 20 39 39 H 1.09005 * 110.78926 * 283.97429 * 22 21 20 40 40 H 1.08002 * 119.97008 * 179.70465 * 26 13 12 41 41 H 1.07996 * 120.03875 * 180.27195 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1033 1.6965 -1.2125 5 1 1.2845 2.7465 0.0006 6 1 3.1033 1.6965 1.2125 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0001 9 8 1.3348 -2.3684 -0.0005 10 6 2.0702 -3.5046 0.1055 11 6 3.4573 -3.4394 0.0921 12 6 4.2026 -4.5970 0.1997 13 6 3.5689 -5.8204 0.3202 14 6 4.3853 -7.0818 0.4368 15 7 4.6570 -7.3588 1.8494 16 6 5.3713 -8.4474 2.1974 17 8 5.7934 -9.1950 1.3407 18 6 5.6456 -8.7358 3.6509 19 1 4.8532 -8.3214 4.2744 20 6 5.7687 -10.2551 3.8813 21 6 6.7931 -10.5027 5.0025 22 6 8.0293 -9.6261 4.6754 23 16 7.2681 -8.0471 4.1400 24 8 7.9429 -7.5666 2.9855 25 8 7.0991 -7.1994 5.2679 26 6 2.1877 -5.8892 0.3282 27 6 1.4368 -4.7346 0.2271 28 1 -0.4850 0.8400 0.0004 29 1 3.9527 -2.4844 -0.0024 30 1 5.2814 -4.5471 0.1889 31 1 5.3275 -6.9554 -0.0965 32 1 3.8314 -7.9144 0.0032 33 1 4.3197 -6.7607 2.5346 34 1 4.8002 -10.6612 4.1735 35 1 6.1050 -10.7388 2.9642 36 1 6.3719 -10.2102 5.9644 37 1 7.0766 -11.5550 5.0233 38 1 8.6442 -9.4777 5.5631 39 1 8.6155 -10.0690 3.8702 40 1 1.6957 -6.8465 0.4176 41 1 0.3583 -4.7885 0.2378 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847430754.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:37 Heat of formation + Delta-G solvation = -136.352490 kcal Electronic energy + Delta-G solvation = -26331.327748 eV Core-core repulsion = 22303.132300 eV Total energy + Delta-G solvation = -4028.195448 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.18730 -40.67558 -38.59300 -38.22767 -37.29670 -36.81826 -35.77191 -34.31041 -32.18275 -31.85112 -30.79684 -27.80210 -26.98530 -25.78197 -23.68168 -22.68251 -22.17413 -21.83285 -20.03901 -19.87693 -19.01760 -18.65231 -18.21281 -17.48382 -17.03019 -16.61611 -16.50772 -16.32187 -15.87002 -15.81534 -15.56587 -15.32943 -14.99886 -14.91361 -14.83391 -14.41883 -14.25911 -13.71695 -13.51740 -13.39680 -13.29838 -13.24003 -13.15795 -13.02557 -12.79805 -12.56628 -12.41516 -12.27486 -12.15970 -11.92309 -11.70198 -11.35426 -11.23724 -11.17931 -10.81140 -10.21891 -9.84812 -9.05213 -8.50169 -6.18508 -1.15124 0.49170 0.54272 1.28836 1.34675 1.44090 1.50236 1.62011 1.97230 2.15908 2.54761 2.77887 2.97734 3.14678 3.28878 3.45402 3.50442 3.69341 3.81389 3.83991 3.99087 4.10292 4.13932 4.21118 4.41230 4.53062 4.60216 4.68632 4.70423 4.77609 5.00709 5.01865 5.05968 5.11758 5.17781 5.22667 5.28863 5.48784 5.66231 5.70824 5.99167 6.12025 6.34653 6.94511 6.99280 7.72628 8.72204 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.019178 B = 0.002302 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.653151 B =12158.757269 C =12961.353818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.020 4.020 3 Si 1.017 2.983 4 H -0.258 1.258 5 H -0.271 1.271 6 H -0.258 1.258 7 C -0.416 4.416 8 H 0.102 0.898 9 O -0.226 6.226 10 C 0.124 3.876 11 C -0.245 4.245 12 C -0.050 4.050 13 C -0.187 4.187 14 C 0.181 3.819 15 N -0.716 5.716 16 C 0.534 3.466 17 O -0.553 6.553 18 C -0.586 4.586 19 H 0.189 0.811 20 C -0.105 4.105 21 C -0.117 4.117 22 C -0.556 4.556 23 S 2.376 3.624 24 O -0.974 6.974 25 O -0.961 6.961 26 C -0.040 4.040 27 C -0.203 4.203 28 H 0.274 0.726 29 H 0.119 0.881 30 H 0.134 0.866 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.412 0.588 34 H 0.119 0.881 35 H 0.090 0.910 36 H 0.110 0.890 37 H 0.130 0.870 38 H 0.166 0.834 39 H 0.154 0.846 40 H 0.153 0.847 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.931 -23.499 12.069 29.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.218 4.218 3 Si 0.836 3.164 4 H -0.182 1.182 5 H -0.195 1.195 6 H -0.182 1.182 7 C -0.492 4.492 8 H 0.119 0.881 9 O -0.132 6.132 10 C 0.072 3.928 11 C -0.264 4.264 12 C -0.069 4.069 13 C -0.188 4.188 14 C 0.059 3.941 15 N -0.368 5.368 16 C 0.319 3.681 17 O -0.432 6.432 18 C -0.696 4.696 19 H 0.206 0.794 20 C -0.143 4.143 21 C -0.155 4.155 22 C -0.690 4.690 23 S 2.563 3.437 24 O -0.971 6.971 25 O -0.958 6.958 26 C -0.058 4.058 27 C -0.222 4.222 28 H 0.083 0.917 29 H 0.137 0.863 30 H 0.152 0.848 31 H 0.088 0.912 32 H 0.104 0.896 33 H 0.248 0.752 34 H 0.137 0.863 35 H 0.109 0.891 36 H 0.128 0.872 37 H 0.148 0.852 38 H 0.184 0.816 39 H 0.172 0.828 40 H 0.171 0.829 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 14.130 -22.860 11.371 29.181 hybrid contribution -0.527 1.008 -0.044 1.138 sum 13.602 -21.852 11.327 28.122 Atomic orbital electron populations 1.70162 1.07956 1.28990 1.48357 1.26560 0.96831 1.02679 0.95698 0.84676 0.77443 0.74402 0.79910 1.18240 1.19529 1.18241 1.21781 0.92538 0.81391 1.53470 0.88080 1.83944 1.35957 1.12615 1.80710 1.20009 0.91489 0.88107 0.93160 1.21234 0.93173 0.99950 1.12038 1.20964 0.99715 0.91084 0.95114 1.19488 0.93695 0.93933 1.11687 1.20004 0.98615 0.94148 0.81380 1.46244 1.54327 1.26378 1.09809 1.19522 0.78228 0.81009 0.89361 1.90692 1.52032 1.48582 1.51864 1.30632 1.24937 1.12396 1.01652 0.79405 1.22110 1.03673 0.87059 1.01499 1.22401 0.89986 1.03703 0.99431 1.30507 1.09072 1.15429 1.14009 1.09544 0.78767 0.80531 0.74889 1.93594 1.71743 1.80633 1.51180 1.93606 1.85554 1.65231 1.51369 1.20897 0.92730 0.97205 0.94987 1.20476 1.00219 0.90249 1.11256 0.91715 0.86277 0.84844 0.91180 0.89615 0.75233 0.86294 0.89101 0.87193 0.85165 0.81621 0.82759 0.82927 0.86318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.59 13.67 21.61 0.30 -55.29 16 2 C -0.02 -1.10 5.49 84.83 0.47 -0.63 16 3 Si 1.02 42.57 29.55 68.60 2.03 44.59 16 4 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 5 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 6 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 7 C -0.42 -23.90 9.49 67.92 0.64 -23.26 16 8 H 0.10 5.34 5.20 -2.91 -0.02 5.33 16 9 O -0.23 -13.33 9.76 -22.73 -0.22 -13.55 16 10 C 0.12 5.94 6.65 22.58 0.15 6.09 16 11 C -0.24 -10.41 9.17 22.39 0.21 -10.20 16 12 C -0.05 -1.70 9.69 22.25 0.22 -1.49 16 13 C -0.19 -5.51 5.25 -19.83 -0.10 -5.62 16 14 C 0.18 4.49 5.80 85.64 0.50 4.99 16 15 N -0.72 -15.85 5.55 -466.79 -2.59 -18.44 16 16 C 0.53 11.76 6.35 87.66 0.56 12.32 16 17 O -0.55 -15.57 15.72 -3.03 -0.05 -15.62 16 18 C -0.59 -7.67 3.60 30.24 0.11 -7.57 16 19 H 0.19 1.33 8.14 -2.39 -0.02 1.31 16 20 C -0.10 -0.76 5.90 31.28 0.18 -0.57 16 21 C -0.12 -0.26 6.48 31.59 0.20 -0.05 16 22 C -0.56 -3.27 7.31 72.68 0.53 -2.74 16 23 S 2.38 39.69 5.95 -56.49 -0.34 39.35 16 24 O -0.97 -26.30 17.28 -127.49 -2.20 -28.51 16 25 O -0.96 -21.55 18.15 -127.49 -2.31 -23.87 16 26 C -0.04 -1.22 9.69 22.25 0.22 -1.00 16 27 C -0.20 -8.09 9.99 22.39 0.22 -7.87 16 28 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 29 H 0.12 5.22 5.64 -2.91 -0.02 5.20 16 30 H 0.13 3.92 8.06 -2.91 -0.02 3.90 16 31 H 0.07 1.85 8.08 -2.39 -0.02 1.83 16 32 H 0.09 1.96 8.08 -2.39 -0.02 1.94 16 33 H 0.41 7.80 8.46 -92.70 -0.78 7.02 16 34 H 0.12 0.39 8.14 -2.38 -0.02 0.37 16 35 H 0.09 0.97 6.88 -2.39 -0.02 0.96 16 36 H 0.11 -0.12 8.14 -2.39 -0.02 -0.13 16 37 H 0.13 -0.24 8.14 -2.39 -0.02 -0.26 16 38 H 0.17 0.26 8.14 -2.39 -0.02 0.24 16 39 H 0.15 0.69 8.14 -2.38 -0.02 0.67 16 40 H 0.15 3.51 8.06 -2.91 -0.02 3.48 16 41 H 0.12 4.66 8.06 -2.91 -0.02 4.64 16 Total: -1.00 -86.16 361.50 -1.00 -87.15 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: 0.29 Total: 21.77 kcal Atomic # 6 Polarization: -41.70 SS G_CDS: 4.10 Total: -37.60 kcal Atomic # 7 Polarization: -71.44 SS G_CDS: -2.29 Total: -73.73 kcal Atomic # 8 Polarization: -76.75 SS G_CDS: -4.79 Total: -81.54 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.59 kcal Atomic # 16 Polarization: 39.69 SS G_CDS: -0.34 Total: 39.35 kcal Total: -86.16 -1.00 -87.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847430754.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.198 kcal (2) G-P(sol) polarization free energy of solvation -86.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds