Wall clock time and date at job start Tue Mar 31 2020 22:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 110.66904 * 2 1 4 4 C 1.54701 * 110.75488 * 123.23203 * 2 1 3 5 5 C 1.51673 * 101.90886 * 93.12852 * 4 2 1 6 6 C 1.37704 * 132.12640 * 195.60367 * 5 4 2 7 7 C 1.38598 * 120.32096 * 178.82426 * 6 5 4 8 8 C 1.37825 * 119.97461 * 0.55459 * 7 6 5 9 9 C 1.39496 * 120.18457 * 359.62861 * 8 7 6 10 10 C 1.47534 * 120.05288 * 180.29404 * 9 8 7 11 11 O 1.21590 * 120.00475 * 180.02562 * 10 9 8 12 12 N 1.34783 * 120.00306 * 0.02562 * 10 9 8 13 13 S 1.65600 * 120.00298 * 180.02562 * 12 10 9 14 14 O 1.42100 * 104.27554 * 181.06799 * 13 12 10 15 15 O 1.42098 * 104.27166 * 308.92542 * 13 12 10 16 16 C 1.81399 * 104.44883 * 64.99614 * 13 12 10 17 17 C 1.50702 * 109.46746 * 180.02562 * 16 13 12 18 18 H 1.07996 * 120.00227 * 359.97438 * 17 16 13 19 19 C 1.37879 * 119.99892 * 179.97438 * 17 16 13 20 20 N 1.31518 * 119.99817 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99859 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47180 * 60.00501 * 21 19 17 23 23 H 1.48503 * 109.46686 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47312 * 300.00034 * 21 19 17 25 25 C 1.38836 * 106.99931 * 15.13222 * 5 4 2 26 26 O 1.35857 * 111.30885 * 1.42506 * 25 5 4 27 27 H 1.09001 * 109.47500 * 296.76584 * 1 2 3 28 28 H 1.09007 * 109.47597 * 56.76568 * 1 2 3 29 29 H 1.08998 * 109.47180 * 176.76564 * 1 2 3 30 30 H 1.09003 * 109.46764 * 183.23473 * 3 2 1 31 31 H 1.08998 * 109.46987 * 303.23504 * 3 2 1 32 32 H 1.09004 * 109.47133 * 63.23311 * 3 2 1 33 33 H 1.09001 * 110.94934 * 334.97014 * 4 2 1 34 34 H 1.09007 * 110.94410 * 211.27809 * 4 2 1 35 35 H 1.08003 * 119.83749 * 359.11447 * 6 5 4 36 36 H 1.08002 * 120.01467 * 180.27794 * 7 6 5 37 37 H 1.08002 * 119.91081 * 179.91442 * 8 7 6 38 38 H 0.97000 * 119.99704 * 359.97438 * 12 10 9 39 39 H 1.08998 * 109.47011 * 299.99478 * 16 13 12 40 40 H 1.09001 * 109.47148 * 60.00390 * 16 13 12 41 41 H 0.97000 * 119.99731 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0700 1.4316 0.0000 4 6 2.0782 -0.7928 1.2100 5 6 2.2649 -2.1770 0.6187 6 6 2.4527 -3.4116 1.1989 7 6 2.5748 -4.5444 0.4096 8 6 2.5196 -4.4362 -0.9633 9 6 2.3334 -3.1900 -1.5617 10 6 2.2683 -3.0785 -3.0314 11 8 2.1065 -1.9917 -3.5522 12 7 2.3883 -4.1813 -3.7970 13 16 2.3159 -4.0560 -5.4466 14 8 2.4514 -5.3939 -5.9059 15 8 1.1283 -3.3147 -5.6899 16 6 3.7784 -3.0792 -5.8910 17 6 3.8237 -2.8944 -7.3860 18 1 3.0503 -3.3221 -8.0067 19 6 4.8525 -2.1791 -7.9613 20 7 5.7946 -1.6586 -7.2055 21 14 4.9090 -1.9506 -9.8145 22 1 3.6841 -1.2412 -10.2633 23 1 6.1062 -1.1508 -10.1782 24 1 4.9820 -3.2786 -10.4750 25 6 2.2075 -2.0398 -0.7616 26 8 2.0394 -0.7408 -1.1221 27 1 -0.3634 0.4628 0.9175 28 1 -0.3634 0.5632 -0.8596 29 1 -0.3633 -1.0260 -0.0580 30 1 3.1583 1.4093 -0.0580 31 1 1.6713 1.9703 -0.8596 32 1 1.7652 1.9349 0.9176 33 1 1.3538 -0.8114 2.0243 34 1 3.0299 -0.3814 1.5466 35 1 2.5006 -3.4983 2.2744 36 1 2.7175 -5.5108 0.8701 37 1 2.6162 -5.3194 -1.5773 38 1 2.5178 -5.0482 -3.3816 39 1 3.7252 -2.1044 -5.4063 40 1 4.6773 -3.6004 -5.5616 41 1 6.5186 -1.1558 -7.6103 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847707680.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:34 Heat of formation + Delta-G solvation = -118.091063 kcal Electronic energy + Delta-G solvation = -27603.048385 eV Core-core repulsion = 23575.644812 eV Total energy + Delta-G solvation = -4027.403573 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.66522 -39.58358 -37.64529 -36.18124 -35.12118 -34.13742 -34.01303 -33.30271 -31.76530 -30.46632 -29.00234 -27.71445 -26.85280 -24.36686 -23.45352 -22.29198 -20.98628 -20.86087 -19.22827 -17.92643 -17.33062 -17.09926 -16.49653 -16.14146 -15.98131 -15.59281 -15.33278 -14.75289 -14.70805 -14.43743 -14.14883 -14.05975 -13.95157 -13.47316 -13.05022 -12.82607 -12.52137 -12.48308 -12.25932 -12.11975 -12.06557 -11.93069 -11.82918 -11.65004 -11.43066 -11.24635 -11.14818 -11.12229 -10.92701 -10.84829 -10.61778 -10.41192 -9.95206 -9.75974 -9.18814 -9.10508 -8.65642 -8.36340 -6.27975 -4.39319 0.62081 1.08136 1.10078 2.66820 2.98108 3.21530 3.27933 3.29952 3.34839 3.59548 4.07960 4.14207 4.26066 4.36582 4.53226 4.63245 4.64436 4.72930 4.85310 4.98343 5.00050 5.06824 5.23000 5.23959 5.25993 5.34905 5.36879 5.46138 5.53310 5.58649 5.68049 5.86630 5.93013 5.95957 6.03242 6.11686 6.37272 6.64800 6.83426 6.98428 7.08991 7.46157 7.78386 7.88975 8.61604 9.27561 10.83790 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.014466 B = 0.003511 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.106324 B = 7972.629493 C = 8960.039967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 C -0.142 4.142 4 C -0.099 4.099 5 C -0.188 4.188 6 C -0.042 4.042 7 C -0.159 4.159 8 C -0.048 4.048 9 C -0.161 4.161 10 C 0.575 3.425 11 O -0.470 6.470 12 N -1.059 6.059 13 S 2.555 3.445 14 O -0.969 6.969 15 O -0.952 6.952 16 C -0.403 4.403 17 C -0.536 4.536 18 H 0.070 0.930 19 C 0.078 3.922 20 N -0.877 5.877 21 Si 0.907 3.093 22 H -0.269 1.269 23 H -0.282 1.282 24 H -0.269 1.269 25 C 0.178 3.822 26 O -0.264 6.264 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.129 0.871 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.421 0.579 39 H 0.099 0.901 40 H 0.085 0.915 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.682 -0.697 22.958 23.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.056 3.944 3 C -0.199 4.199 4 C -0.136 4.136 5 C -0.189 4.189 6 C -0.061 4.061 7 C -0.177 4.177 8 C -0.067 4.067 9 C -0.167 4.167 10 C 0.362 3.638 11 O -0.341 6.341 12 N -0.819 5.819 13 S 2.657 3.343 14 O -0.960 6.960 15 O -0.942 6.942 16 C -0.540 4.540 17 C -0.575 4.575 18 H 0.088 0.912 19 C -0.129 4.129 20 N -0.512 5.512 21 Si 0.732 3.268 22 H -0.194 1.194 23 H -0.207 1.207 24 H -0.194 1.194 25 C 0.130 3.870 26 O -0.176 6.176 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.147 0.853 36 H 0.154 0.846 37 H 0.156 0.844 38 H 0.255 0.745 39 H 0.117 0.883 40 H 0.103 0.897 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.346 -0.022 21.867 22.769 hybrid contribution 0.744 -0.175 -0.299 0.821 sum -5.601 -0.197 21.569 22.285 Atomic orbital electron populations 1.22208 0.93122 1.03364 1.03299 1.22891 0.94704 0.93335 0.83459 1.21840 1.02303 0.92424 1.03303 1.21915 1.02782 0.90649 0.98207 1.20804 1.08767 0.95987 0.93352 1.20480 0.95091 0.90357 1.00131 1.20936 1.04900 0.98814 0.93027 1.21126 0.94763 0.95326 0.95490 1.19231 1.13348 0.91675 0.92398 1.17933 0.75075 0.83504 0.87267 1.91033 1.43438 1.25456 1.74141 1.55433 1.80247 1.16034 1.30231 1.07098 0.79857 0.76006 0.71341 1.93514 1.88675 1.36438 1.77399 1.93528 1.45629 1.73458 1.81577 1.27595 1.10234 1.09559 1.06643 1.20251 1.11865 1.37849 0.87534 0.91180 1.24921 0.94560 0.94004 0.99414 1.69958 1.11899 1.33372 1.36013 0.86402 0.78081 0.78855 0.83438 1.19357 1.20678 1.19406 1.19458 0.90787 0.84899 0.91873 1.87119 1.77983 1.15304 1.37213 0.90688 0.90815 0.91842 0.91162 0.90815 0.90340 0.88837 0.88791 0.85293 0.84628 0.84443 0.74459 0.88258 0.89677 0.92129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 8.86 37.16 0.33 -1.21 16 2 C 0.09 1.01 1.26 -89.72 -0.11 0.89 16 3 C -0.14 -1.25 8.95 37.16 0.33 -0.92 16 4 C -0.10 -0.84 6.18 -26.51 -0.16 -1.00 16 5 C -0.19 -2.05 6.26 -104.12 -0.65 -2.70 16 6 C -0.04 -0.37 10.02 -39.64 -0.40 -0.76 16 7 C -0.16 -1.37 10.05 -39.60 -0.40 -1.76 16 8 C -0.05 -0.53 9.51 -39.26 -0.37 -0.90 16 9 C -0.16 -2.43 5.89 -104.72 -0.62 -3.05 16 10 C 0.58 10.93 7.50 -12.47 -0.09 10.84 16 11 O -0.47 -10.95 13.97 -21.47 -0.30 -11.25 16 12 N -1.06 -18.67 5.55 30.46 0.17 -18.50 16 13 S 2.55 58.30 5.03 -107.50 -0.54 57.76 16 14 O -0.97 -22.82 18.08 -57.54 -1.04 -23.86 16 15 O -0.95 -24.81 17.04 -64.79 -1.10 -25.92 16 16 C -0.40 -10.50 5.64 36.01 0.20 -10.30 16 17 C -0.54 -15.47 9.13 -34.44 -0.31 -15.78 16 18 H 0.07 1.96 7.71 -52.49 -0.40 1.56 16 19 C 0.08 2.22 5.46 -17.82 -0.10 2.12 16 20 N -0.88 -25.72 13.29 55.43 0.74 -24.99 16 21 Si 0.91 21.59 29.54 -169.99 -5.02 16.57 16 22 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 25 C 0.18 2.64 6.59 -38.44 -0.25 2.38 16 26 O -0.26 -4.21 9.56 -34.85 -0.33 -4.55 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.76 8.14 -51.92 -0.42 0.33 16 29 H 0.06 0.66 8.07 -51.93 -0.42 0.24 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.09 0.57 7.92 -51.93 -0.41 0.16 16 34 H 0.09 0.70 7.93 -51.93 -0.41 0.29 16 35 H 0.13 0.73 8.06 -52.48 -0.42 0.30 16 36 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 37 H 0.14 1.12 6.37 -52.49 -0.33 0.79 16 38 H 0.42 5.41 6.80 -34.47 -0.23 5.18 16 39 H 0.10 2.73 7.19 -51.92 -0.37 2.36 16 40 H 0.09 2.13 8.14 -51.92 -0.42 1.70 16 41 H 0.27 7.35 8.31 -40.82 -0.34 7.02 16 LS Contribution 359.94 15.07 5.42 5.42 Total: -1.00 -38.67 359.94 -9.72 -48.39 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -5.11 Total: 3.06 kcal Atomic # 6 Polarization: -19.55 SS G_CDS: -2.61 Total: -22.16 kcal Atomic # 7 Polarization: -44.39 SS G_CDS: 0.91 Total: -43.49 kcal Atomic # 8 Polarization: -62.79 SS G_CDS: -2.78 Total: -65.57 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: 58.30 SS G_CDS: -0.54 Total: 57.76 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -38.67 -9.72 -48.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847707680.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.703 kcal (2) G-P(sol) polarization free energy of solvation -38.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds