Wall clock time and date at job start Tue Mar 31 2020 22:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 110.66904 * 2 1 4 4 C 1.54701 * 110.75488 * 123.23203 * 2 1 3 5 5 C 1.51673 * 101.90886 * 93.12852 * 4 2 1 6 6 C 1.37704 * 132.12640 * 195.60367 * 5 4 2 7 7 C 1.38598 * 120.32096 * 178.82426 * 6 5 4 8 8 C 1.37825 * 119.97461 * 0.55459 * 7 6 5 9 9 C 1.39496 * 120.18457 * 359.62861 * 8 7 6 10 10 C 1.47534 * 120.05288 * 180.29404 * 9 8 7 11 11 O 1.21590 * 120.00475 * 180.02562 * 10 9 8 12 12 N 1.34783 * 120.00306 * 0.02562 * 10 9 8 13 13 S 1.65600 * 120.00298 * 180.02562 * 12 10 9 14 14 O 1.42100 * 104.27554 * 181.06799 * 13 12 10 15 15 O 1.42098 * 104.27166 * 308.92542 * 13 12 10 16 16 C 1.81399 * 104.44883 * 64.99614 * 13 12 10 17 17 C 1.50702 * 109.46746 * 180.02562 * 16 13 12 18 18 H 1.07996 * 120.00227 * 359.97438 * 17 16 13 19 19 C 1.37879 * 119.99892 * 179.97438 * 17 16 13 20 20 N 1.31518 * 119.99817 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99859 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47180 * 60.00501 * 21 19 17 23 23 H 1.48503 * 109.46686 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47312 * 300.00034 * 21 19 17 25 25 C 1.38836 * 106.99931 * 15.13222 * 5 4 2 26 26 O 1.35857 * 111.30885 * 1.42506 * 25 5 4 27 27 H 1.09001 * 109.47500 * 296.76584 * 1 2 3 28 28 H 1.09007 * 109.47597 * 56.76568 * 1 2 3 29 29 H 1.08998 * 109.47180 * 176.76564 * 1 2 3 30 30 H 1.09003 * 109.46764 * 183.23473 * 3 2 1 31 31 H 1.08998 * 109.46987 * 303.23504 * 3 2 1 32 32 H 1.09004 * 109.47133 * 63.23311 * 3 2 1 33 33 H 1.09001 * 110.94934 * 334.97014 * 4 2 1 34 34 H 1.09007 * 110.94410 * 211.27809 * 4 2 1 35 35 H 1.08003 * 119.83749 * 359.11447 * 6 5 4 36 36 H 1.08002 * 120.01467 * 180.27794 * 7 6 5 37 37 H 1.08002 * 119.91081 * 179.91442 * 8 7 6 38 38 H 0.97000 * 119.99704 * 359.97438 * 12 10 9 39 39 H 1.08998 * 109.47011 * 299.99478 * 16 13 12 40 40 H 1.09001 * 109.47148 * 60.00390 * 16 13 12 41 41 H 0.97000 * 119.99731 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0700 1.4316 0.0000 4 6 2.0782 -0.7928 1.2100 5 6 2.2649 -2.1770 0.6187 6 6 2.4527 -3.4116 1.1989 7 6 2.5748 -4.5444 0.4096 8 6 2.5196 -4.4362 -0.9633 9 6 2.3334 -3.1900 -1.5617 10 6 2.2683 -3.0785 -3.0314 11 8 2.1065 -1.9917 -3.5522 12 7 2.3883 -4.1813 -3.7970 13 16 2.3159 -4.0560 -5.4466 14 8 2.4514 -5.3939 -5.9059 15 8 1.1283 -3.3147 -5.6899 16 6 3.7784 -3.0792 -5.8910 17 6 3.8237 -2.8944 -7.3860 18 1 3.0503 -3.3221 -8.0067 19 6 4.8525 -2.1791 -7.9613 20 7 5.7946 -1.6586 -7.2055 21 14 4.9090 -1.9506 -9.8145 22 1 3.6841 -1.2412 -10.2633 23 1 6.1062 -1.1508 -10.1782 24 1 4.9820 -3.2786 -10.4750 25 6 2.2075 -2.0398 -0.7616 26 8 2.0394 -0.7408 -1.1221 27 1 -0.3634 0.4628 0.9175 28 1 -0.3634 0.5632 -0.8596 29 1 -0.3633 -1.0260 -0.0580 30 1 3.1583 1.4093 -0.0580 31 1 1.6713 1.9703 -0.8596 32 1 1.7652 1.9349 0.9176 33 1 1.3538 -0.8114 2.0243 34 1 3.0299 -0.3814 1.5466 35 1 2.5006 -3.4983 2.2744 36 1 2.7175 -5.5108 0.8701 37 1 2.6162 -5.3194 -1.5773 38 1 2.5178 -5.0482 -3.3816 39 1 3.7252 -2.1044 -5.4063 40 1 4.6773 -3.6004 -5.5616 41 1 6.5186 -1.1558 -7.6103 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847707680.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:34 Heat of formation + Delta-G solvation = -146.904498 kcal Electronic energy + Delta-G solvation = -27604.297830 eV Core-core repulsion = 23575.644812 eV Total energy + Delta-G solvation = -4028.653017 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.56546 -41.00398 -38.59052 -38.11934 -37.12451 -35.71096 -35.45864 -34.86110 -32.61618 -31.36613 -31.14225 -28.43609 -27.57626 -25.80662 -25.36775 -23.12751 -22.20161 -21.71445 -20.87546 -19.49303 -18.93786 -18.43462 -18.03630 -17.56534 -17.17646 -16.95093 -16.61114 -16.35705 -16.06343 -15.91161 -15.80123 -14.94700 -14.72374 -14.56213 -14.31627 -14.18708 -13.76481 -13.68847 -13.59243 -13.53090 -13.27387 -13.24820 -13.16359 -12.94800 -12.85606 -12.74729 -12.70451 -12.57772 -12.43769 -12.11304 -11.90443 -11.87279 -11.70588 -11.35102 -11.11806 -10.82012 -10.03380 -9.22263 -8.45535 -6.66341 -0.81005 -0.34533 0.27414 1.34463 1.39685 1.40402 1.47984 1.55191 2.16619 2.27681 2.62798 2.72318 2.87898 3.08311 3.33264 3.36645 3.48758 3.81136 3.84464 3.89890 3.99777 4.13306 4.22050 4.39666 4.58075 4.61543 4.66476 4.66952 4.69591 4.71113 4.83169 4.89935 4.94894 5.09874 5.16591 5.23150 5.24340 5.29601 5.35059 5.62612 5.67869 5.70429 6.15614 6.41741 6.46700 7.05658 8.67618 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.014466 B = 0.003511 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.106324 B = 7972.629493 C = 8960.039967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.076 3.924 3 C -0.140 4.140 4 C -0.088 4.088 5 C -0.190 4.190 6 C -0.027 4.027 7 C -0.145 4.145 8 C -0.051 4.051 9 C -0.197 4.197 10 C 0.570 3.430 11 O -0.526 6.526 12 N -1.040 6.040 13 S 2.600 3.400 14 O -0.973 6.973 15 O -0.985 6.985 16 C -0.419 4.419 17 C -0.572 4.572 18 H 0.070 0.930 19 C 0.024 3.976 20 N -0.909 5.909 21 Si 0.971 3.029 22 H -0.265 1.265 23 H -0.267 1.267 24 H -0.255 1.255 25 C 0.143 3.857 26 O -0.313 6.313 27 H 0.111 0.889 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.115 0.885 33 H 0.127 0.873 34 H 0.107 0.893 35 H 0.173 0.827 36 H 0.179 0.821 37 H 0.160 0.840 38 H 0.443 0.557 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.696 -2.245 26.043 26.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.039 3.961 3 C -0.197 4.197 4 C -0.124 4.124 5 C -0.191 4.191 6 C -0.044 4.044 7 C -0.163 4.163 8 C -0.070 4.070 9 C -0.203 4.203 10 C 0.361 3.639 11 O -0.401 6.401 12 N -0.806 5.806 13 S 2.701 3.299 14 O -0.964 6.964 15 O -0.976 6.976 16 C -0.554 4.554 17 C -0.611 4.611 18 H 0.088 0.912 19 C -0.180 4.180 20 N -0.545 5.545 21 Si 0.792 3.208 22 H -0.189 1.189 23 H -0.191 1.191 24 H -0.179 1.179 25 C 0.095 3.905 26 O -0.226 6.226 27 H 0.130 0.870 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.133 0.867 33 H 0.145 0.855 34 H 0.125 0.875 35 H 0.191 0.809 36 H 0.196 0.804 37 H 0.178 0.822 38 H 0.283 0.717 39 H 0.091 0.909 40 H 0.104 0.896 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.340 -1.610 24.965 25.808 hybrid contribution 0.739 0.273 -1.063 1.323 sum -5.602 -1.336 23.902 24.586 Atomic orbital electron populations 1.22211 0.92633 1.02507 1.04257 1.23314 0.95318 0.93952 0.83492 1.21888 1.01600 0.91800 1.04365 1.21960 1.04166 0.88649 0.97638 1.21192 1.08271 0.98034 0.91556 1.21065 0.91923 0.89082 1.02359 1.21468 1.02335 1.00742 0.91748 1.21482 0.94068 0.94168 0.97240 1.19232 1.17487 0.94100 0.89463 1.18754 0.73405 0.82502 0.89268 1.90996 1.46351 1.27456 1.75332 1.54844 1.79946 1.17456 1.28376 1.05422 0.77669 0.74690 0.72167 1.93496 1.88336 1.35879 1.78656 1.93482 1.46483 1.74423 1.83168 1.27640 1.12844 1.09328 1.05601 1.20717 1.12464 1.38765 0.89115 0.91180 1.25955 0.93935 0.93271 1.04800 1.70056 1.12479 1.33748 1.38238 0.85412 0.78652 0.79623 0.77088 1.18933 1.19098 1.17869 1.19914 0.92220 0.84485 0.93886 1.87069 1.78717 1.16585 1.40270 0.87023 0.92846 0.93169 0.92044 0.92651 0.86654 0.85500 0.87525 0.80937 0.80414 0.82216 0.71684 0.90912 0.89569 0.91574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.00 8.86 71.98 0.64 -2.36 16 2 C 0.08 1.63 1.26 -10.21 -0.01 1.62 16 3 C -0.14 -2.47 8.95 71.98 0.64 -1.83 16 4 C -0.09 -1.26 6.18 30.74 0.19 -1.07 16 5 C -0.19 -3.70 6.26 -19.54 -0.12 -3.82 16 6 C -0.03 -0.33 10.02 22.23 0.22 -0.11 16 7 C -0.15 -1.84 10.05 22.26 0.22 -1.61 16 8 C -0.05 -1.01 9.51 22.48 0.21 -0.79 16 9 C -0.20 -6.06 5.89 -19.93 -0.12 -6.18 16 10 C 0.57 22.92 7.50 86.69 0.65 23.58 16 11 O -0.53 -26.72 13.97 21.58 0.30 -26.42 16 12 N -1.04 -37.76 5.55 -175.81 -0.98 -38.74 16 13 S 2.60 123.04 5.03 -56.49 -0.28 122.76 16 14 O -0.97 -46.02 18.08 -127.65 -2.31 -48.33 16 15 O -0.99 -53.71 17.04 -120.72 -2.06 -55.76 16 16 C -0.42 -23.10 5.64 71.24 0.40 -22.70 16 17 C -0.57 -34.33 9.13 25.60 0.23 -34.10 16 18 H 0.07 4.07 7.71 -2.91 -0.02 4.04 16 19 C 0.02 1.39 5.46 84.65 0.46 1.85 16 20 N -0.91 -55.05 13.29 21.45 0.28 -54.76 16 21 Si 0.97 44.68 29.54 68.60 2.03 46.70 16 22 H -0.26 -11.92 7.11 99.48 0.71 -11.22 16 23 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 24 H -0.25 -11.05 7.11 99.48 0.71 -10.35 16 25 C 0.14 4.31 6.59 23.01 0.15 4.47 16 26 O -0.31 -10.69 9.56 -77.07 -0.74 -11.43 16 27 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 29 H 0.05 1.06 8.07 -2.39 -0.02 1.04 16 30 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.11 1.11 8.14 -2.38 -0.02 1.09 16 33 H 0.13 0.96 7.92 -2.39 -0.02 0.94 16 34 H 0.11 1.26 7.93 -2.38 -0.02 1.25 16 35 H 0.17 0.74 8.06 -2.91 -0.02 0.71 16 36 H 0.18 0.81 8.06 -2.91 -0.02 0.79 16 37 H 0.16 2.19 6.37 -2.91 -0.02 2.17 16 38 H 0.44 11.20 6.80 -96.75 -0.66 10.54 16 39 H 0.07 4.35 7.19 -2.39 -0.02 4.33 16 40 H 0.09 4.57 8.14 -2.39 -0.02 4.55 16 41 H 0.28 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -91.17 359.94 0.44 -90.73 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: 0.41 Total: 18.31 kcal Atomic # 6 Polarization: -46.84 SS G_CDS: 3.78 Total: -43.06 kcal Atomic # 7 Polarization: -92.81 SS G_CDS: -0.69 Total: -93.50 kcal Atomic # 8 Polarization: -137.14 SS G_CDS: -4.80 Total: -141.94 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Atomic # 16 Polarization: 123.04 SS G_CDS: -0.28 Total: 122.76 kcal Total: -91.17 0.44 -90.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847707680.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.177 kcal (2) G-P(sol) polarization free energy of solvation -91.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds