Wall clock time and date at job start Tue Mar 31 2020 22:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38394 * 119.85389 * 2 1 4 4 C 1.37922 * 120.15527 * 179.97438 * 3 2 1 5 5 C 1.39648 * 119.84504 * 0.02562 * 4 3 2 6 6 C 1.47721 * 120.14821 * 179.97438 * 5 4 3 7 7 O 1.21473 * 119.99980 * 185.04122 * 6 5 4 8 8 O 1.34710 * 120.00036 * 5.04788 * 6 5 4 9 9 C 1.45209 * 117.00193 * 185.03460 * 8 6 5 10 10 C 1.52997 * 109.47223 * 184.93600 * 9 8 6 11 11 C 1.50703 * 115.55026 * 54.23619 * 10 9 8 12 12 H 1.07995 * 120.00063 * 215.58893 * 11 10 9 13 13 C 1.37881 * 119.99978 * 35.32195 * 11 10 9 14 14 N 1.31520 * 119.99713 * 355.73352 * 13 11 10 15 15 Si 1.86798 * 120.00106 * 175.74243 * 13 11 10 16 16 H 1.48503 * 109.47028 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47305 * 119.99869 * 15 13 11 18 18 H 1.48502 * 109.46716 * 239.99677 * 15 13 11 19 19 C 1.52991 * 117.50103 * 199.90963 * 10 9 8 20 20 C 1.52998 * 117.50038 * 268.57085 * 10 9 8 21 21 C 1.39613 * 119.70379 * 0.24879 * 5 4 3 22 22 C 1.37968 * 119.84226 * 359.51753 * 21 5 4 23 23 S 1.76200 * 119.92229 * 180.23466 * 22 21 5 24 24 N 1.65594 * 107.22084 * 115.23277 * 23 22 21 25 25 O 1.42098 * 106.40063 * 228.77249 * 23 22 21 26 26 O 1.42104 * 106.40232 * 1.68690 * 23 22 21 27 27 H 1.08996 * 109.47348 * 89.99398 * 1 2 3 28 28 H 1.08996 * 109.47553 * 210.00248 * 1 2 3 29 29 H 1.09003 * 109.47269 * 329.99766 * 1 2 3 30 30 H 1.08003 * 119.92191 * 359.97438 * 3 2 1 31 31 H 1.07997 * 120.07573 * 179.97438 * 4 3 2 32 32 H 1.08999 * 109.47129 * 64.93317 * 9 8 6 33 33 H 1.09004 * 109.46191 * 304.93392 * 9 8 6 34 34 H 0.97001 * 119.99482 * 185.00007 * 14 13 11 35 35 H 1.09000 * 117.50369 * 215.00218 * 19 10 9 36 36 H 1.09007 * 117.49811 * 0.02562 * 19 10 9 37 37 H 1.09000 * 117.49339 * 359.97438 * 20 10 9 38 38 H 1.08996 * 117.50044 * 144.97247 * 20 10 9 39 39 H 1.07991 * 120.07782 * 179.72830 * 21 5 4 40 40 H 0.97003 * 120.00235 * 150.00057 * 24 23 22 41 41 H 0.97005 * 119.99742 * 329.99561 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1958 1.2003 0.0000 4 6 3.5750 1.2075 0.0005 5 6 4.2764 -0.0001 0.0005 6 6 5.7536 -0.0001 0.0005 7 8 6.3609 -1.0480 -0.0919 8 8 6.4272 1.1620 0.1032 9 6 7.8729 1.0987 -0.0164 10 6 8.4676 2.4835 0.2475 11 6 8.0686 3.1244 1.5518 12 1 7.9212 4.1929 1.6056 13 6 7.8864 2.3459 2.6751 14 7 7.9784 1.0367 2.5899 15 14 7.5088 3.1507 4.3180 16 1 7.4595 4.6251 4.1473 17 1 6.1969 2.6656 4.8170 18 1 8.5703 2.8012 5.2960 19 6 9.8814 2.7555 -0.2699 20 6 8.6768 3.4037 -0.9568 21 6 3.5751 -1.2073 -0.0053 22 6 2.1955 -1.1999 -0.0009 23 16 1.3084 -2.7224 -0.0020 24 7 0.4835 -2.8101 1.4312 25 8 0.3269 -2.6141 -1.0238 26 8 2.2838 -3.7552 0.0325 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3634 0.8900 0.5139 30 1 1.6522 2.1335 -0.0004 31 1 4.1113 2.1449 0.0001 32 1 8.1405 0.7740 -1.0219 33 1 8.2669 0.3894 0.7115 34 1 7.7792 0.4852 3.3626 35 1 10.5231 3.3980 0.3330 36 1 10.3879 1.9480 -0.7987 37 1 8.3912 3.0223 -1.9371 38 1 8.5256 4.4725 -0.8058 39 1 4.1114 -2.1447 -0.0097 40 1 -0.3581 -3.2902 1.4779 41 1 0.8420 -2.3814 2.2242 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849644575.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:10 Heat of formation + Delta-G solvation = -104.423798 kcal Electronic energy + Delta-G solvation = -27330.372657 eV Core-core repulsion = 23303.561741 eV Total energy + Delta-G solvation = -4026.810916 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.09245 -38.78991 -37.38218 -36.74270 -36.00458 -35.02104 -33.76692 -32.95271 -32.23341 -31.49431 -28.10791 -26.36333 -25.40983 -23.44380 -22.81964 -21.32507 -20.78631 -19.63322 -19.21753 -18.29090 -17.64507 -17.11982 -16.79391 -16.05527 -15.95130 -15.61240 -15.43171 -15.03053 -14.78648 -14.63901 -14.16247 -14.10294 -13.75723 -13.11917 -12.84038 -12.48991 -12.44690 -12.34011 -12.24059 -12.20820 -12.03618 -11.88901 -11.67801 -11.48735 -11.08986 -11.05435 -10.81878 -10.59029 -10.55661 -10.40045 -10.03835 -9.63685 -9.59391 -9.36572 -9.03198 -8.99076 -8.82614 -8.30846 -6.03903 -4.17973 0.18084 0.51910 0.89196 2.69772 2.97269 3.19810 3.29356 3.32554 3.34478 3.47921 3.77486 4.29684 4.33333 4.38864 4.60194 4.85264 4.88466 5.06982 5.14526 5.28761 5.32085 5.40519 5.50622 5.61784 5.68321 5.78583 5.85650 6.00455 6.09799 6.16746 6.21349 6.43554 6.55746 6.58574 6.61080 6.73601 6.75924 6.92034 7.18731 7.41051 7.53088 7.86456 8.26604 8.58733 8.80722 9.44397 10.90592 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.015816 B = 0.003236 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.924989 B = 8650.782575 C = 9037.912604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.037 3.963 3 C -0.155 4.155 4 C 0.001 3.999 5 C -0.132 4.132 6 C 0.500 3.500 7 O -0.514 6.514 8 O -0.315 6.315 9 C 0.119 3.881 10 C 0.045 3.955 11 C -0.480 4.480 12 H 0.063 0.937 13 C 0.072 3.928 14 N -0.882 5.882 15 Si 0.898 3.102 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.283 1.283 19 C -0.195 4.195 20 C -0.209 4.209 21 C 0.041 3.959 22 C -0.696 4.696 23 S 2.707 3.293 24 N -1.250 6.250 25 O -0.961 6.961 26 O -0.959 6.959 27 H 0.099 0.901 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.140 0.860 31 H 0.154 0.846 32 H 0.022 0.978 33 H 0.121 0.879 34 H 0.262 0.738 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.158 0.842 40 H 0.420 0.580 41 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.038 -2.921 -2.475 17.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.036 3.964 3 C -0.174 4.174 4 C -0.017 4.017 5 C -0.134 4.134 6 C 0.343 3.657 7 O -0.406 6.406 8 O -0.229 6.229 9 C 0.046 3.954 10 C 0.044 3.956 11 C -0.518 4.518 12 H 0.081 0.919 13 C -0.130 4.130 14 N -0.520 5.520 15 Si 0.725 3.275 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.209 1.209 19 C -0.233 4.233 20 C -0.246 4.246 21 C 0.021 3.979 22 C -0.783 4.783 23 S 2.795 3.205 24 N -0.924 5.924 25 O -0.950 6.950 26 O -0.948 6.948 27 H 0.117 0.883 28 H 0.091 0.909 29 H 0.103 0.897 30 H 0.158 0.842 31 H 0.171 0.829 32 H 0.040 0.960 33 H 0.139 0.861 34 H 0.073 0.927 35 H 0.102 0.898 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.176 0.824 40 H 0.250 0.750 41 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -16.664 -3.980 -3.197 17.428 hybrid contribution 0.120 1.082 1.509 1.860 sum -16.544 -2.899 -1.688 16.881 Atomic orbital electron populations 1.21328 0.89934 1.04128 1.04912 1.19761 0.95907 0.91922 0.88855 1.21181 0.94111 0.97899 1.04159 1.21988 0.94163 0.98747 0.86826 1.19484 0.91472 0.94302 1.08151 1.20768 0.87826 0.83285 0.73790 1.90777 1.70069 1.33254 1.46456 1.86459 1.24489 1.31453 1.80509 1.22919 0.73991 1.00247 0.98259 1.18938 0.93009 0.91057 0.92568 1.20487 1.46478 0.93575 0.91228 0.91910 1.24974 0.94225 0.94802 0.99032 1.69774 1.48259 1.03558 1.30380 0.86445 0.77890 0.79575 0.83564 1.19674 1.21002 1.20855 1.22988 0.92639 1.02805 1.04848 1.22955 1.05399 0.99019 0.97254 1.21079 0.91431 0.99213 0.86166 1.30374 1.05595 1.19047 1.23303 1.01472 0.73270 0.73204 0.72569 1.53187 1.38775 1.71636 1.28789 1.93607 1.59661 1.86705 1.55041 1.93623 1.61666 1.53694 1.85795 0.88268 0.90879 0.89703 0.84191 0.82860 0.96029 0.86103 0.92708 0.89767 0.91374 0.91266 0.90313 0.82410 0.74955 0.75323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 8.71 36.00 0.31 -0.81 16 2 C 0.04 0.40 5.88 -104.53 -0.61 -0.21 16 3 C -0.15 -1.75 9.68 -39.64 -0.38 -2.13 16 4 C 0.00 0.01 9.62 -39.17 -0.38 -0.36 16 5 C -0.13 -2.29 5.87 -104.98 -0.62 -2.91 16 6 C 0.50 10.83 7.88 34.61 0.27 11.11 16 7 O -0.51 -12.30 16.06 -19.25 -0.31 -12.61 16 8 O -0.32 -7.34 8.99 -40.52 -0.36 -7.71 16 9 C 0.12 2.89 4.45 37.16 0.17 3.06 16 10 C 0.04 1.08 2.21 -155.67 -0.34 0.74 16 11 C -0.48 -12.58 8.79 -34.44 -0.30 -12.88 16 12 H 0.06 1.63 7.82 -52.49 -0.41 1.22 16 13 C 0.07 1.89 5.35 -17.82 -0.10 1.80 16 14 N -0.88 -23.98 10.16 55.43 0.56 -23.41 16 15 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 16 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 19 C -0.19 -4.22 9.96 -26.70 -0.27 -4.49 16 20 C -0.21 -4.39 9.92 -26.70 -0.26 -4.65 16 21 C 0.04 0.63 9.09 -39.17 -0.36 0.28 16 22 C -0.70 -8.68 5.90 -39.64 -0.23 -8.91 16 23 S 2.71 29.58 5.47 -107.50 -0.59 28.99 16 24 N -1.25 -7.82 8.15 60.35 0.49 -7.33 16 25 O -0.96 -12.05 16.45 -57.17 -0.94 -12.99 16 26 O -0.96 -14.15 16.96 -57.17 -0.97 -15.12 16 27 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.07 0.48 5.30 -51.93 -0.28 0.20 16 29 H 0.08 0.47 8.08 -51.93 -0.42 0.05 16 30 H 0.14 1.14 8.06 -52.48 -0.42 0.72 16 31 H 0.15 2.19 7.62 -52.49 -0.40 1.79 16 32 H 0.02 0.49 8.09 -51.93 -0.42 0.07 16 33 H 0.12 3.28 5.76 -51.93 -0.30 2.98 16 34 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 35 H 0.08 1.80 8.14 -51.93 -0.42 1.38 16 36 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 37 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.08 1.60 8.14 -51.93 -0.42 1.17 16 39 H 0.16 2.56 6.93 -52.49 -0.36 2.20 16 40 H 0.42 1.65 8.96 -34.47 -0.31 1.34 16 41 H 0.42 1.94 8.96 -34.46 -0.31 1.63 16 LS Contribution 361.03 15.07 5.44 5.44 Total: -1.00 -34.23 361.03 -9.68 -43.91 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -4.88 Total: 5.84 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: -3.10 Total: -20.38 kcal Atomic # 7 Polarization: -31.80 SS G_CDS: 1.05 Total: -30.74 kcal Atomic # 8 Polarization: -45.84 SS G_CDS: -2.58 Total: -48.42 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Atomic # 16 Polarization: 29.58 SS G_CDS: -0.59 Total: 28.99 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.23 -9.68 -43.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849644575.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.512 kcal (2) G-P(sol) polarization free energy of solvation -34.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds