Wall clock time and date at job start Tue Mar 31 2020 22:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38394 * 119.85389 * 2 1 4 4 C 1.37922 * 120.15527 * 179.97438 * 3 2 1 5 5 C 1.39648 * 119.84504 * 0.02562 * 4 3 2 6 6 C 1.47721 * 120.14821 * 179.97438 * 5 4 3 7 7 O 1.21473 * 119.99980 * 185.04122 * 6 5 4 8 8 O 1.34710 * 120.00036 * 5.04788 * 6 5 4 9 9 C 1.45209 * 117.00193 * 185.03460 * 8 6 5 10 10 C 1.52997 * 109.47223 * 184.93600 * 9 8 6 11 11 C 1.50703 * 115.55026 * 54.23619 * 10 9 8 12 12 H 1.07995 * 120.00063 * 215.58893 * 11 10 9 13 13 C 1.37881 * 119.99978 * 35.32195 * 11 10 9 14 14 N 1.31520 * 119.99713 * 355.73352 * 13 11 10 15 15 Si 1.86798 * 120.00106 * 175.74243 * 13 11 10 16 16 H 1.48503 * 109.47028 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47305 * 119.99869 * 15 13 11 18 18 H 1.48502 * 109.46716 * 239.99677 * 15 13 11 19 19 C 1.52991 * 117.50103 * 199.90963 * 10 9 8 20 20 C 1.52998 * 117.50038 * 268.57085 * 10 9 8 21 21 C 1.39613 * 119.70379 * 0.24879 * 5 4 3 22 22 C 1.37968 * 119.84226 * 359.51753 * 21 5 4 23 23 S 1.76200 * 119.92229 * 180.23466 * 22 21 5 24 24 N 1.65594 * 107.22084 * 115.23277 * 23 22 21 25 25 O 1.42098 * 106.40063 * 228.77249 * 23 22 21 26 26 O 1.42104 * 106.40232 * 1.68690 * 23 22 21 27 27 H 1.08996 * 109.47348 * 89.99398 * 1 2 3 28 28 H 1.08996 * 109.47553 * 210.00248 * 1 2 3 29 29 H 1.09003 * 109.47269 * 329.99766 * 1 2 3 30 30 H 1.08003 * 119.92191 * 359.97438 * 3 2 1 31 31 H 1.07997 * 120.07573 * 179.97438 * 4 3 2 32 32 H 1.08999 * 109.47129 * 64.93317 * 9 8 6 33 33 H 1.09004 * 109.46191 * 304.93392 * 9 8 6 34 34 H 0.97001 * 119.99482 * 185.00007 * 14 13 11 35 35 H 1.09000 * 117.50369 * 215.00218 * 19 10 9 36 36 H 1.09007 * 117.49811 * 0.02562 * 19 10 9 37 37 H 1.09000 * 117.49339 * 359.97438 * 20 10 9 38 38 H 1.08996 * 117.50044 * 144.97247 * 20 10 9 39 39 H 1.07991 * 120.07782 * 179.72830 * 21 5 4 40 40 H 0.97003 * 120.00235 * 150.00057 * 24 23 22 41 41 H 0.97005 * 119.99742 * 329.99561 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1958 1.2003 0.0000 4 6 3.5750 1.2075 0.0005 5 6 4.2764 -0.0001 0.0005 6 6 5.7536 -0.0001 0.0005 7 8 6.3609 -1.0480 -0.0919 8 8 6.4272 1.1620 0.1032 9 6 7.8729 1.0987 -0.0164 10 6 8.4676 2.4835 0.2475 11 6 8.0686 3.1244 1.5518 12 1 7.9212 4.1929 1.6056 13 6 7.8864 2.3459 2.6751 14 7 7.9784 1.0367 2.5899 15 14 7.5088 3.1507 4.3180 16 1 7.4595 4.6251 4.1473 17 1 6.1969 2.6656 4.8170 18 1 8.5703 2.8012 5.2960 19 6 9.8814 2.7555 -0.2699 20 6 8.6768 3.4037 -0.9568 21 6 3.5751 -1.2073 -0.0053 22 6 2.1955 -1.1999 -0.0009 23 16 1.3084 -2.7224 -0.0020 24 7 0.4835 -2.8101 1.4312 25 8 0.3269 -2.6141 -1.0238 26 8 2.2838 -3.7552 0.0325 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3634 0.8900 0.5139 30 1 1.6522 2.1335 -0.0004 31 1 4.1113 2.1449 0.0001 32 1 8.1405 0.7740 -1.0219 33 1 8.2669 0.3894 0.7115 34 1 7.7792 0.4852 3.3626 35 1 10.5231 3.3980 0.3330 36 1 10.3879 1.9480 -0.7987 37 1 8.3912 3.0223 -1.9371 38 1 8.5256 4.4725 -0.8058 39 1 4.1114 -2.1447 -0.0097 40 1 -0.3581 -3.2902 1.4779 41 1 0.8420 -2.3814 2.2242 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849644575.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:09 Heat of formation + Delta-G solvation = -128.332780 kcal Electronic energy + Delta-G solvation = -27331.409428 eV Core-core repulsion = 23303.561741 eV Total energy + Delta-G solvation = -4027.847687 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.52733 -40.15408 -38.55698 -38.35199 -37.00932 -36.80372 -34.56808 -34.20864 -33.82501 -32.55121 -29.30223 -27.99391 -27.32166 -24.53171 -24.02446 -23.02000 -22.05819 -21.11025 -20.58365 -19.51347 -18.62726 -18.43199 -18.17787 -17.50099 -17.25366 -17.08475 -16.59884 -16.50849 -16.32426 -15.80308 -15.58744 -15.11441 -14.96313 -14.79146 -14.00772 -13.87050 -13.60386 -13.44573 -13.39699 -13.28200 -13.23710 -13.15743 -12.93902 -12.92354 -12.79733 -12.69171 -12.31921 -12.14531 -11.99580 -11.80867 -11.45807 -11.28063 -11.20683 -10.92089 -10.71051 -10.65402 -10.19855 -10.05794 -8.00567 -6.21478 -0.73794 -0.56623 -0.23724 1.39304 1.40035 1.43416 1.53909 1.82211 2.08532 2.35547 2.40962 2.65246 3.01442 3.36846 3.47508 3.58327 3.64900 3.76831 3.90579 4.13314 4.21588 4.28655 4.39569 4.43607 4.57684 4.62992 4.72282 4.74398 4.83830 4.90246 4.99277 5.05864 5.12765 5.17063 5.17708 5.24734 5.43766 5.50531 5.58789 5.74584 5.84378 6.30987 6.33209 6.75252 6.90282 7.43032 8.91230 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.015816 B = 0.003236 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.924989 B = 8650.782575 C = 9037.912604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.053 3.947 3 C -0.142 4.142 4 C -0.006 4.006 5 C -0.164 4.164 6 C 0.494 3.506 7 O -0.552 6.552 8 O -0.323 6.323 9 C 0.126 3.874 10 C 0.006 3.994 11 C -0.493 4.493 12 H 0.060 0.940 13 C 0.028 3.972 14 N -0.908 5.908 15 Si 0.956 3.044 16 H -0.263 1.263 17 H -0.281 1.281 18 H -0.284 1.284 19 C -0.188 4.188 20 C -0.185 4.185 21 C 0.027 3.973 22 C -0.696 4.696 23 S 2.732 3.268 24 N -1.228 6.228 25 O -0.972 6.972 26 O -1.001 7.001 27 H 0.107 0.893 28 H 0.085 0.915 29 H 0.118 0.882 30 H 0.183 0.817 31 H 0.150 0.850 32 H 0.027 0.973 33 H 0.088 0.912 34 H 0.257 0.743 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.139 0.861 40 H 0.435 0.565 41 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.205 -1.232 -2.193 20.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.052 3.948 3 C -0.160 4.160 4 C -0.024 4.024 5 C -0.166 4.166 6 C 0.340 3.660 7 O -0.445 6.445 8 O -0.237 6.237 9 C 0.052 3.948 10 C 0.005 3.995 11 C -0.530 4.530 12 H 0.078 0.922 13 C -0.172 4.172 14 N -0.546 5.546 15 Si 0.782 3.218 16 H -0.187 1.187 17 H -0.207 1.207 18 H -0.211 1.211 19 C -0.226 4.226 20 C -0.222 4.222 21 C 0.008 3.992 22 C -0.782 4.782 23 S 2.818 3.182 24 N -0.909 5.909 25 O -0.962 6.962 26 O -0.990 6.990 27 H 0.125 0.875 28 H 0.104 0.896 29 H 0.136 0.864 30 H 0.201 0.799 31 H 0.168 0.832 32 H 0.045 0.955 33 H 0.106 0.894 34 H 0.067 0.933 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.106 0.894 39 H 0.156 0.844 40 H 0.269 0.731 41 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -19.839 -2.265 -2.919 20.180 hybrid contribution 0.985 0.541 1.387 1.785 sum -18.854 -1.724 -1.532 18.995 Atomic orbital electron populations 1.21551 0.86810 1.06507 1.05987 1.20286 0.97960 0.90899 0.85688 1.21619 0.92583 0.99863 1.01922 1.22046 0.95754 0.97289 0.87287 1.19335 0.88792 0.96346 1.12172 1.21613 0.89686 0.82305 0.72382 1.90733 1.71265 1.34138 1.48413 1.86454 1.23931 1.32419 1.80873 1.22657 0.74840 0.99896 0.97372 1.19063 0.95126 0.91713 0.93575 1.20722 1.46449 0.93482 0.92354 0.92195 1.25669 0.94366 0.95154 1.02012 1.69975 1.49335 1.04649 1.30657 0.85532 0.77513 0.79076 0.79696 1.18717 1.20717 1.21055 1.23007 0.91971 1.03094 1.04548 1.22972 1.03614 0.98938 0.96656 1.20960 0.92908 0.97910 0.87430 1.30568 1.04150 1.20787 1.22711 1.00595 0.72444 0.72046 0.73097 1.52711 1.39006 1.71665 1.27517 1.93587 1.59550 1.86593 1.56444 1.93586 1.63412 1.55268 1.86720 0.87514 0.89648 0.86386 0.79948 0.83198 0.95519 0.89402 0.93347 0.89635 0.90186 0.89560 0.89369 0.84351 0.73082 0.73920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 8.71 71.23 0.62 -0.99 16 2 C 0.05 0.98 5.88 -19.80 -0.12 0.87 16 3 C -0.14 -2.75 9.68 22.23 0.22 -2.53 16 4 C -0.01 -0.16 9.62 22.54 0.22 0.06 16 5 C -0.16 -5.94 5.87 -20.10 -0.12 -6.06 16 6 C 0.49 22.78 7.88 70.33 0.55 23.33 16 7 O -0.55 -28.47 16.06 19.92 0.32 -28.15 16 8 O -0.32 -15.73 8.99 -56.20 -0.51 -16.24 16 9 C 0.13 6.38 4.45 71.98 0.32 6.71 16 10 C 0.01 0.28 2.21 -52.93 -0.12 0.16 16 11 C -0.49 -26.04 8.79 25.60 0.23 -25.82 16 12 H 0.06 3.11 7.82 -2.91 -0.02 3.09 16 13 C 0.03 1.46 5.35 84.65 0.45 1.91 16 14 N -0.91 -51.20 10.16 21.45 0.22 -50.98 16 15 Si 0.96 42.13 29.54 68.60 2.03 44.16 16 16 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 17 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 18 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 19 C -0.19 -8.07 9.96 30.61 0.30 -7.76 16 20 C -0.18 -7.53 9.92 30.62 0.30 -7.23 16 21 C 0.03 0.89 9.09 22.54 0.20 1.10 16 22 C -0.70 -16.61 5.90 22.23 0.13 -16.48 16 23 S 2.73 56.16 5.47 -56.49 -0.31 55.85 16 24 N -1.23 -12.10 8.15 37.02 0.30 -11.79 16 25 O -0.97 -22.30 16.45 -128.00 -2.11 -24.40 16 26 O -1.00 -29.92 16.96 -128.00 -2.17 -32.09 16 27 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.08 0.72 5.30 -2.39 -0.01 0.70 16 29 H 0.12 0.56 8.08 -2.39 -0.02 0.54 16 30 H 0.18 1.99 8.06 -2.91 -0.02 1.97 16 31 H 0.15 4.28 7.62 -2.91 -0.02 4.25 16 32 H 0.03 1.28 8.09 -2.39 -0.02 1.26 16 33 H 0.09 5.06 5.76 -2.38 -0.01 5.05 16 34 H 0.26 14.14 8.32 -92.71 -0.77 13.37 16 35 H 0.09 3.60 8.14 -2.39 -0.02 3.58 16 36 H 0.08 3.20 8.14 -2.38 -0.02 3.18 16 37 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 38 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16 39 H 0.14 4.93 6.93 -2.92 -0.02 4.91 16 40 H 0.43 2.03 8.96 -96.74 -0.87 1.16 16 41 H 0.43 2.76 8.96 -96.74 -0.87 1.89 16 Total: -1.00 -77.72 361.03 0.34 -77.38 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: -0.64 Total: 19.00 kcal Atomic # 6 Polarization: -35.93 SS G_CDS: 3.20 Total: -32.74 kcal Atomic # 7 Polarization: -63.29 SS G_CDS: 0.52 Total: -62.77 kcal Atomic # 8 Polarization: -96.42 SS G_CDS: -4.46 Total: -100.88 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Atomic # 16 Polarization: 56.16 SS G_CDS: -0.31 Total: 55.85 kcal Total: -77.72 0.34 -77.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849644575.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.949 kcal (2) G-P(sol) polarization free energy of solvation -77.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds