Wall clock time and date at job start Tue Mar 31 2020 22:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 120.00032 * 2 1 4 4 H 1.48500 * 109.47106 * 240.00212 * 3 2 1 5 5 H 1.48502 * 109.46873 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47206 * 119.99778 * 3 2 1 7 7 C 1.37871 * 119.99795 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99796 * 175.46934 * 7 2 1 9 9 C 1.50703 * 120.00336 * 355.74077 * 7 2 1 10 10 C 1.53001 * 115.54543 * 35.31853 * 9 7 2 11 11 O 1.45195 * 109.47397 * 54.24219 * 10 9 7 12 12 C 1.34707 * 117.00315 * 184.93575 * 11 10 9 13 13 O 1.21473 * 119.99864 * 5.03322 * 12 11 10 14 14 C 1.47725 * 120.00641 * 185.03351 * 12 11 10 15 15 C 1.39633 * 120.14203 * 4.76983 * 14 12 11 16 16 C 1.37949 * 119.84058 * 179.71972 * 15 14 12 17 17 C 1.38360 * 120.15378 * 0.55529 * 16 15 14 18 18 C 1.50706 * 119.85174 * 179.73736 * 17 16 15 19 19 S 1.81394 * 109.47387 * 269.98443 * 18 17 16 20 20 N 1.65601 * 104.44979 * 179.97438 * 19 18 17 21 21 O 1.42105 * 110.54238 * 291.62268 * 19 18 17 22 22 O 1.42091 * 110.54594 * 68.37380 * 19 18 17 23 23 C 1.38371 * 120.30383 * 359.72557 * 17 16 15 24 24 C 1.37943 * 120.14719 * 359.97438 * 23 17 16 25 25 C 1.53001 * 117.50145 * 249.64795 * 9 7 2 26 26 C 1.52995 * 117.49949 * 180.98465 * 9 7 2 27 27 H 0.97001 * 119.99868 * 4.99800 * 1 2 3 28 28 H 1.09000 * 109.46763 * 174.24382 * 10 9 7 29 29 H 1.09005 * 109.47138 * 294.23946 * 10 9 7 30 30 H 1.08001 * 120.08182 * 359.97438 * 15 14 12 31 31 H 1.08005 * 119.92339 * 180.25255 * 16 15 14 32 32 H 1.09001 * 109.46749 * 29.98612 * 18 17 16 33 33 H 1.09001 * 109.46775 * 149.98075 * 18 17 16 34 34 H 0.97001 * 119.99831 * 0.02562 * 20 19 18 35 35 H 0.96995 * 120.00144 * 179.97438 * 20 19 18 36 36 H 1.07999 * 119.92576 * 180.02562 * 23 17 16 37 37 H 1.08003 * 120.07602 * 179.97438 * 24 23 17 38 38 H 1.09002 * 117.49395 * 359.97438 * 25 9 7 39 39 H 1.08994 * 117.49942 * 145.02007 * 25 9 7 40 40 H 1.08996 * 117.50282 * 214.97708 * 26 9 7 41 41 H 1.08999 * 117.50295 * 359.97438 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0821 -1.1955 -0.0744 9 6 1.2542 -2.4974 0.0958 10 6 -0.0998 -2.5334 -0.6158 11 8 0.0720 -2.1417 -2.0033 12 6 -1.0442 -2.0220 -2.7478 13 8 -2.1359 -2.1490 -2.2304 14 6 -0.9409 -1.7363 -4.1935 15 6 0.3105 -1.6883 -4.8110 16 6 0.3994 -1.4266 -6.1626 17 6 -0.7470 -1.2007 -6.9036 18 6 -0.6416 -0.9097 -8.3786 19 16 -0.4886 0.8799 -8.6324 20 7 -0.3819 1.0566 -10.2755 21 8 -1.6997 1.5379 -8.2866 22 8 0.7629 1.3471 -8.1483 23 6 -1.9899 -1.2410 -6.2968 24 6 -2.0937 -1.5076 -4.9474 25 6 1.3924 -3.2981 1.3922 26 6 2.0774 -3.7869 0.1135 27 1 -0.4850 0.8369 -0.0732 28 1 -0.5070 -3.5435 -0.5711 29 1 -0.7863 -1.8429 -0.1257 30 1 1.2064 -1.8596 -4.2328 31 1 1.3664 -1.3932 -6.6424 32 1 0.2365 -1.4108 -8.7859 33 1 -1.5353 -1.2735 -8.8854 34 1 -0.4102 0.2756 -10.8501 35 1 -0.2918 1.9410 -10.6634 36 1 -2.8807 -1.0642 -6.8812 37 1 -3.0644 -1.5384 -4.4748 38 1 2.0265 -2.8822 2.1753 39 1 0.5189 -3.8508 1.7380 40 1 1.6543 -4.6610 -0.3813 41 1 3.1617 -3.6926 0.0551 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849719012.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:20 Heat of formation + Delta-G solvation = -101.845180 kcal Electronic energy + Delta-G solvation = -26854.250856 eV Core-core repulsion = 22827.551757 eV Total energy + Delta-G solvation = -4026.699099 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.98440 -38.69882 -37.24357 -36.69900 -36.14645 -34.96272 -33.57565 -33.33255 -32.16446 -31.08844 -28.43963 -26.36877 -25.35139 -22.97529 -22.74858 -21.27515 -20.26917 -19.75905 -19.15933 -18.06649 -17.76593 -17.36542 -16.74855 -16.21884 -15.91546 -15.67594 -15.39724 -15.31576 -14.94118 -14.55930 -14.33247 -13.72587 -13.57950 -13.15032 -13.07439 -12.89543 -12.40026 -12.31164 -12.24814 -12.17980 -12.01611 -11.70665 -11.54087 -11.27450 -11.09972 -10.96737 -10.81635 -10.78195 -10.50682 -10.33792 -9.98598 -9.57780 -9.31145 -9.06143 -8.98720 -8.88924 -8.76020 -8.24310 -5.96975 -4.11127 -0.23981 0.82882 1.31345 2.53843 2.98295 3.31374 3.33620 3.38091 3.39065 3.50458 3.86495 3.93251 3.98595 4.38163 4.57458 4.82328 4.89263 4.95032 4.95757 5.28888 5.34017 5.44912 5.55645 5.57351 5.75037 5.94070 6.02979 6.16849 6.23306 6.25312 6.41178 6.49249 6.62282 6.62576 6.65007 6.75695 6.80866 6.96901 7.22974 7.46592 7.58888 7.92799 8.32709 8.65334 8.87065 9.51633 10.97593 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.014384 B = 0.003102 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.073497 B = 9025.317478 C = 9959.921180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.074 3.926 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.483 4.483 8 H 0.062 0.938 9 C 0.046 3.954 10 C 0.119 3.881 11 O -0.314 6.314 12 C 0.498 3.502 13 O -0.517 6.517 14 C -0.094 4.094 15 C -0.058 4.058 16 C -0.116 4.116 17 C -0.082 4.082 18 C -0.573 4.573 19 S 2.608 3.392 20 N -1.254 6.254 21 O -0.954 6.954 22 O -0.952 6.952 23 C -0.117 4.117 24 C -0.059 4.059 25 C -0.196 4.196 26 C -0.209 4.209 27 H 0.264 0.736 28 H 0.021 0.979 29 H 0.121 0.879 30 H 0.152 0.848 31 H 0.137 0.863 32 H 0.146 0.854 33 H 0.145 0.855 34 H 0.411 0.589 35 H 0.420 0.580 36 H 0.137 0.863 37 H 0.143 0.857 38 H 0.084 0.916 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.308 -3.402 -21.488 21.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.129 4.129 3 Si 0.724 3.276 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.520 4.520 8 H 0.080 0.920 9 C 0.046 3.954 10 C 0.046 3.954 11 O -0.227 6.227 12 C 0.342 3.658 13 O -0.409 6.409 14 C -0.096 4.096 15 C -0.076 4.076 16 C -0.135 4.135 17 C -0.084 4.084 18 C -0.701 4.701 19 S 2.700 3.300 20 N -0.927 5.927 21 O -0.943 6.943 22 O -0.941 6.941 23 C -0.136 4.136 24 C -0.078 4.078 25 C -0.234 4.234 26 C -0.246 4.246 27 H 0.074 0.926 28 H 0.039 0.961 29 H 0.138 0.862 30 H 0.169 0.831 31 H 0.155 0.845 32 H 0.164 0.836 33 H 0.163 0.837 34 H 0.236 0.764 35 H 0.249 0.751 36 H 0.155 0.845 37 H 0.161 0.839 38 H 0.102 0.898 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.742 -2.569 -20.384 20.728 hybrid contribution 0.371 0.123 -0.641 0.751 sum -2.371 -2.446 -21.025 21.300 Atomic orbital electron populations 1.69739 1.05925 1.26972 1.49387 1.24954 0.94860 0.99221 0.93844 0.86571 0.79587 0.82670 0.78739 1.20000 1.21151 1.20149 1.20408 0.92724 0.88375 1.50514 0.91995 1.18921 0.92194 0.90596 0.93698 1.22905 0.99696 0.96362 0.76467 1.86477 1.32879 1.77574 1.25801 1.20890 0.83477 0.74227 0.87156 1.90749 1.29027 1.47635 1.73504 1.19576 0.94588 1.03829 0.91590 1.21671 0.97996 0.93772 0.94134 1.21138 0.98039 1.00063 0.94301 1.18997 0.94735 1.03503 0.91137 1.29384 1.12779 1.26146 1.01762 1.05111 0.75175 0.76819 0.72880 1.53233 1.94678 1.17070 1.27766 1.93625 1.47886 1.70882 1.81937 1.93636 1.44104 1.77579 1.78760 1.21020 0.96821 1.00815 0.94961 1.21298 0.98726 0.94740 0.92996 1.22994 1.01761 1.06185 0.92456 1.22950 0.98747 0.99941 1.02995 0.92574 0.96127 0.86150 0.83070 0.84468 0.83571 0.83661 0.76356 0.75060 0.84539 0.83883 0.89789 0.91421 0.91304 0.90321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.69 10.16 55.43 0.56 -24.13 16 2 C 0.07 2.01 5.35 -17.82 -0.10 1.91 16 3 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.48 -13.02 8.79 -34.44 -0.30 -13.32 16 8 H 0.06 1.65 7.82 -52.48 -0.41 1.24 16 9 C 0.05 1.15 2.21 -155.66 -0.34 0.80 16 10 C 0.12 2.94 4.45 37.16 0.17 3.10 16 11 O -0.31 -7.49 8.99 -40.51 -0.36 -7.85 16 12 C 0.50 10.93 7.88 34.61 0.27 11.20 16 13 O -0.52 -12.29 16.06 -19.25 -0.31 -12.60 16 14 C -0.09 -1.66 5.87 -104.98 -0.62 -2.28 16 15 C -0.06 -0.90 9.62 -39.17 -0.38 -1.27 16 16 C -0.12 -1.45 9.68 -39.64 -0.38 -1.84 16 17 C -0.08 -0.90 5.15 -104.53 -0.54 -1.44 16 18 C -0.57 -3.57 6.21 36.01 0.22 -3.35 16 19 S 2.61 23.27 5.95 -107.50 -0.64 22.63 16 20 N -1.25 -5.62 9.43 60.35 0.57 -5.05 16 21 O -0.95 -12.34 18.10 -57.54 -1.04 -13.39 16 22 O -0.95 -12.66 18.10 -57.54 -1.04 -13.70 16 23 C -0.12 -1.40 9.68 -39.64 -0.38 -1.79 16 24 C -0.06 -0.89 9.60 -39.17 -0.38 -1.27 16 25 C -0.20 -4.32 9.96 -26.69 -0.27 -4.58 16 26 C -0.21 -4.47 9.92 -26.69 -0.26 -4.73 16 27 H 0.26 7.23 8.32 -40.82 -0.34 6.89 16 28 H 0.02 0.48 8.09 -51.93 -0.42 0.06 16 29 H 0.12 3.31 5.76 -51.93 -0.30 3.01 16 30 H 0.15 2.39 7.62 -52.49 -0.40 1.99 16 31 H 0.14 1.34 8.06 -52.48 -0.42 0.92 16 32 H 0.15 0.47 8.08 -51.92 -0.42 0.05 16 33 H 0.15 0.44 8.08 -51.92 -0.42 0.02 16 34 H 0.41 0.40 8.83 -34.47 -0.30 0.09 16 35 H 0.42 1.66 8.96 -34.47 -0.31 1.35 16 36 H 0.14 1.23 8.06 -52.49 -0.42 0.80 16 37 H 0.14 2.06 7.66 -52.48 -0.40 1.66 16 38 H 0.08 1.83 8.14 -51.93 -0.42 1.41 16 39 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 40 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 41 H 0.08 1.63 8.14 -51.93 -0.42 1.20 16 LS Contribution 369.93 15.07 5.57 5.57 Total: -1.00 -37.00 369.93 -10.05 -47.05 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -5.06 Total: 4.04 kcal Atomic # 6 Polarization: -15.57 SS G_CDS: -3.29 Total: -18.86 kcal Atomic # 7 Polarization: -30.32 SS G_CDS: 1.13 Total: -29.18 kcal Atomic # 8 Polarization: -44.79 SS G_CDS: -2.76 Total: -47.55 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: 23.27 SS G_CDS: -0.64 Total: 22.63 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -37.00 -10.05 -47.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849719012.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.793 kcal (2) G-P(sol) polarization free energy of solvation -37.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds