Wall clock time and date at job start Tue Mar 31 2020 22:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 120.00032 * 2 1 4 4 H 1.48500 * 109.47106 * 240.00212 * 3 2 1 5 5 H 1.48502 * 109.46873 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47206 * 119.99778 * 3 2 1 7 7 C 1.37871 * 119.99795 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99796 * 175.46934 * 7 2 1 9 9 C 1.50703 * 120.00336 * 355.74077 * 7 2 1 10 10 C 1.53001 * 115.54543 * 35.31853 * 9 7 2 11 11 O 1.45195 * 109.47397 * 54.24219 * 10 9 7 12 12 C 1.34707 * 117.00315 * 184.93575 * 11 10 9 13 13 O 1.21473 * 119.99864 * 5.03322 * 12 11 10 14 14 C 1.47725 * 120.00641 * 185.03351 * 12 11 10 15 15 C 1.39633 * 120.14203 * 4.76983 * 14 12 11 16 16 C 1.37949 * 119.84058 * 179.71972 * 15 14 12 17 17 C 1.38360 * 120.15378 * 0.55529 * 16 15 14 18 18 C 1.50706 * 119.85174 * 179.73736 * 17 16 15 19 19 S 1.81394 * 109.47387 * 269.98443 * 18 17 16 20 20 N 1.65601 * 104.44979 * 179.97438 * 19 18 17 21 21 O 1.42105 * 110.54238 * 291.62268 * 19 18 17 22 22 O 1.42091 * 110.54594 * 68.37380 * 19 18 17 23 23 C 1.38371 * 120.30383 * 359.72557 * 17 16 15 24 24 C 1.37943 * 120.14719 * 359.97438 * 23 17 16 25 25 C 1.53001 * 117.50145 * 249.64795 * 9 7 2 26 26 C 1.52995 * 117.49949 * 180.98465 * 9 7 2 27 27 H 0.97001 * 119.99868 * 4.99800 * 1 2 3 28 28 H 1.09000 * 109.46763 * 174.24382 * 10 9 7 29 29 H 1.09005 * 109.47138 * 294.23946 * 10 9 7 30 30 H 1.08001 * 120.08182 * 359.97438 * 15 14 12 31 31 H 1.08005 * 119.92339 * 180.25255 * 16 15 14 32 32 H 1.09001 * 109.46749 * 29.98612 * 18 17 16 33 33 H 1.09001 * 109.46775 * 149.98075 * 18 17 16 34 34 H 0.97001 * 119.99831 * 0.02562 * 20 19 18 35 35 H 0.96995 * 120.00144 * 179.97438 * 20 19 18 36 36 H 1.07999 * 119.92576 * 180.02562 * 23 17 16 37 37 H 1.08003 * 120.07602 * 179.97438 * 24 23 17 38 38 H 1.09002 * 117.49395 * 359.97438 * 25 9 7 39 39 H 1.08994 * 117.49942 * 145.02007 * 25 9 7 40 40 H 1.08996 * 117.50282 * 214.97708 * 26 9 7 41 41 H 1.08999 * 117.50295 * 359.97438 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0821 -1.1955 -0.0744 9 6 1.2542 -2.4974 0.0958 10 6 -0.0998 -2.5334 -0.6158 11 8 0.0720 -2.1417 -2.0033 12 6 -1.0442 -2.0220 -2.7478 13 8 -2.1359 -2.1490 -2.2304 14 6 -0.9409 -1.7363 -4.1935 15 6 0.3105 -1.6883 -4.8110 16 6 0.3994 -1.4266 -6.1626 17 6 -0.7470 -1.2007 -6.9036 18 6 -0.6416 -0.9097 -8.3786 19 16 -0.4886 0.8799 -8.6324 20 7 -0.3819 1.0566 -10.2755 21 8 -1.6997 1.5379 -8.2866 22 8 0.7629 1.3471 -8.1483 23 6 -1.9899 -1.2410 -6.2968 24 6 -2.0937 -1.5076 -4.9474 25 6 1.3924 -3.2981 1.3922 26 6 2.0774 -3.7869 0.1135 27 1 -0.4850 0.8369 -0.0732 28 1 -0.5070 -3.5435 -0.5711 29 1 -0.7863 -1.8429 -0.1257 30 1 1.2064 -1.8596 -4.2328 31 1 1.3664 -1.3932 -6.6424 32 1 0.2365 -1.4108 -8.7859 33 1 -1.5353 -1.2735 -8.8854 34 1 -0.4102 0.2756 -10.8501 35 1 -0.2918 1.9410 -10.6634 36 1 -2.8807 -1.0642 -6.8812 37 1 -3.0644 -1.5384 -4.4748 38 1 2.0265 -2.8822 2.1753 39 1 0.5189 -3.8508 1.7380 40 1 1.6543 -4.6610 -0.3813 41 1 3.1617 -3.6926 0.0551 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849719012.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:20 Heat of formation + Delta-G solvation = -128.955315 kcal Electronic energy + Delta-G solvation = -26855.426439 eV Core-core repulsion = 22827.551757 eV Total energy + Delta-G solvation = -4027.874682 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.44371 -40.05286 -38.50629 -38.06061 -36.95891 -36.76572 -34.34210 -34.20282 -33.99661 -32.15576 -29.55163 -28.07843 -27.34172 -24.24684 -23.82016 -23.00975 -21.66192 -21.09932 -20.42072 -18.97762 -18.57673 -18.56487 -18.37202 -17.53908 -17.21002 -16.92975 -16.50807 -16.48921 -16.20794 -16.05262 -15.75320 -15.24876 -14.85678 -14.59039 -14.17292 -13.80447 -13.72035 -13.65240 -13.41654 -13.16369 -13.11851 -13.02934 -12.99132 -12.88418 -12.73846 -12.36762 -12.16025 -12.13609 -12.12240 -11.78878 -11.40615 -11.24067 -11.19884 -10.93037 -10.69397 -10.18534 -10.12319 -9.95790 -8.01217 -6.21515 -1.00365 -0.25326 0.24972 1.40922 1.42041 1.49254 1.55559 1.90565 1.98046 2.40165 2.61251 2.74792 3.02034 3.25402 3.36566 3.54764 3.71153 3.84741 3.89093 4.12300 4.21697 4.23098 4.36741 4.42848 4.47032 4.58462 4.72870 4.77336 4.90890 4.92693 4.97293 5.12243 5.18953 5.20307 5.31715 5.31868 5.44916 5.51698 5.70925 5.78614 5.85210 6.31047 6.42491 6.75548 6.94761 7.42835 8.89809 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.014384 B = 0.003102 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.073497 B = 9025.317478 C = 9959.921180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.030 3.970 3 Si 0.949 3.051 4 H -0.271 1.271 5 H -0.290 1.290 6 H -0.266 1.266 7 C -0.496 4.496 8 H 0.059 0.941 9 C 0.004 3.996 10 C 0.126 3.874 11 O -0.326 6.326 12 C 0.492 3.508 13 O -0.550 6.550 14 C -0.130 4.130 15 C -0.071 4.071 16 C -0.116 4.116 17 C -0.072 4.072 18 C -0.555 4.555 19 S 2.613 3.387 20 N -1.235 6.235 21 O -1.002 7.002 22 O -1.004 7.004 23 C -0.113 4.113 24 C -0.069 4.069 25 C -0.187 4.187 26 C -0.184 4.184 27 H 0.256 0.744 28 H 0.029 0.971 29 H 0.087 0.913 30 H 0.138 0.862 31 H 0.169 0.831 32 H 0.190 0.810 33 H 0.192 0.808 34 H 0.430 0.570 35 H 0.424 0.576 36 H 0.174 0.826 37 H 0.139 0.861 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.557 -4.255 -24.848 25.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.170 4.170 3 Si 0.775 3.225 4 H -0.196 1.196 5 H -0.216 1.216 6 H -0.191 1.191 7 C -0.533 4.533 8 H 0.077 0.923 9 C 0.004 3.996 10 C 0.053 3.947 11 O -0.240 6.240 12 C 0.338 3.662 13 O -0.443 6.443 14 C -0.132 4.132 15 C -0.089 4.089 16 C -0.135 4.135 17 C -0.074 4.074 18 C -0.685 4.685 19 S 2.708 3.292 20 N -0.913 5.913 21 O -0.991 6.991 22 O -0.993 6.993 23 C -0.131 4.131 24 C -0.087 4.087 25 C -0.225 4.225 26 C -0.221 4.221 27 H 0.066 0.934 28 H 0.047 0.953 29 H 0.105 0.895 30 H 0.156 0.844 31 H 0.186 0.814 32 H 0.207 0.793 33 H 0.209 0.791 34 H 0.260 0.740 35 H 0.255 0.745 36 H 0.191 0.809 37 H 0.156 0.844 38 H 0.103 0.897 39 H 0.100 0.900 40 H 0.106 0.894 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.967 -3.412 -23.765 24.089 hybrid contribution 0.128 0.314 0.260 0.427 sum -1.839 -3.098 -23.505 23.780 Atomic orbital electron populations 1.69942 1.07006 1.26839 1.50633 1.25613 0.95479 1.01973 0.93926 0.85739 0.78470 0.79248 0.79030 1.19639 1.21565 1.19132 1.20681 0.92747 0.89711 1.50158 0.92298 1.19051 0.92911 0.91438 0.96198 1.22636 0.99287 0.95783 0.77029 1.86475 1.34071 1.78019 1.25460 1.21745 0.82568 0.73044 0.88793 1.90701 1.29749 1.49356 1.74535 1.19493 0.96694 1.07817 0.89184 1.21659 0.96651 0.94796 0.95773 1.21514 1.00212 0.98814 0.92929 1.19460 0.93677 1.00508 0.93731 1.29332 1.17379 1.23101 0.98694 1.04503 0.73456 0.77715 0.73507 1.52723 1.94110 1.18348 1.26168 1.93581 1.49222 1.73124 1.83182 1.93588 1.45888 1.79535 1.80270 1.21465 0.98879 0.99106 0.93692 1.21413 0.97651 0.95170 0.94447 1.23007 1.02322 1.05157 0.92015 1.22969 0.98882 0.98490 1.01802 0.93391 0.95256 0.89469 0.84378 0.81396 0.79268 0.79079 0.73986 0.74454 0.80908 0.84357 0.89732 0.89957 0.89378 0.89510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.86 10.16 21.45 0.22 -52.64 16 2 C 0.03 1.66 5.35 84.65 0.45 2.11 16 3 Si 0.95 44.57 29.54 68.60 2.03 46.59 16 4 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 5 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.50 -27.20 8.79 25.60 0.22 -26.97 16 8 H 0.06 3.17 7.82 -2.91 -0.02 3.15 16 9 C 0.00 0.22 2.21 -52.93 -0.12 0.10 16 10 C 0.13 6.50 4.45 71.98 0.32 6.82 16 11 O -0.33 -16.39 8.99 -56.17 -0.51 -16.89 16 12 C 0.49 22.88 7.88 70.33 0.55 23.43 16 13 O -0.55 -27.83 16.06 19.92 0.32 -27.51 16 14 C -0.13 -4.77 5.87 -20.10 -0.12 -4.89 16 15 C -0.07 -2.22 9.62 22.54 0.22 -2.00 16 16 C -0.12 -2.63 9.68 22.23 0.22 -2.41 16 17 C -0.07 -1.33 5.15 -19.80 -0.10 -1.43 16 18 C -0.56 -3.84 6.21 71.24 0.44 -3.39 16 19 S 2.61 38.97 5.95 -56.49 -0.34 38.64 16 20 N -1.23 -6.60 9.43 37.02 0.35 -6.25 16 21 O -1.00 -24.10 18.10 -127.65 -2.31 -26.42 16 22 O -1.00 -25.06 18.10 -127.65 -2.31 -27.37 16 23 C -0.11 -2.40 9.68 22.23 0.22 -2.19 16 24 C -0.07 -2.06 9.60 22.53 0.22 -1.84 16 25 C -0.19 -8.14 9.96 30.62 0.30 -7.84 16 26 C -0.18 -7.67 9.92 30.62 0.30 -7.37 16 27 H 0.26 14.75 8.32 -92.71 -0.77 13.98 16 28 H 0.03 1.41 8.09 -2.39 -0.02 1.39 16 29 H 0.09 5.08 5.76 -2.38 -0.01 5.07 16 30 H 0.14 4.57 7.62 -2.91 -0.02 4.55 16 31 H 0.17 2.69 8.06 -2.91 -0.02 2.67 16 32 H 0.19 -0.14 8.08 -2.39 -0.02 -0.15 16 33 H 0.19 -0.25 8.08 -2.39 -0.02 -0.27 16 34 H 0.43 -1.23 8.83 -96.74 -0.85 -2.09 16 35 H 0.42 2.16 8.96 -96.75 -0.87 1.29 16 36 H 0.17 2.38 8.06 -2.91 -0.02 2.36 16 37 H 0.14 4.15 7.66 -2.91 -0.02 4.13 16 38 H 0.08 3.63 8.14 -2.39 -0.02 3.61 16 39 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16 40 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 41 H 0.09 3.45 8.14 -2.39 -0.02 3.43 16 Total: -1.00 -86.00 369.93 -0.05 -86.05 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -0.64 Total: 13.68 kcal Atomic # 6 Polarization: -31.00 SS G_CDS: 3.13 Total: -27.87 kcal Atomic # 7 Polarization: -59.46 SS G_CDS: 0.57 Total: -58.90 kcal Atomic # 8 Polarization: -93.38 SS G_CDS: -4.81 Total: -98.19 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Atomic # 16 Polarization: 38.97 SS G_CDS: -0.34 Total: 38.64 kcal Total: -86.00 -0.05 -86.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849719012.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.903 kcal (2) G-P(sol) polarization free energy of solvation -85.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds