Wall clock time and date at job start Tue Mar 31 2020 22:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00067 * 2 1 4 4 H 1.48500 * 109.47004 * 240.00055 * 3 2 1 5 5 H 1.48504 * 109.47050 * 359.97438 * 3 2 1 6 6 H 1.48489 * 109.47236 * 119.99707 * 3 2 1 7 7 C 1.37873 * 119.99606 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99430 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00628 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47397 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47006 * 179.97438 * 10 9 7 12 12 S 1.81402 * 109.46924 * 180.02562 * 11 10 9 13 13 O 1.42100 * 110.54110 * 68.38221 * 12 11 10 14 14 O 1.42097 * 110.54647 * 291.62774 * 12 11 10 15 15 O 1.52206 * 104.44832 * 179.97438 * 12 11 10 16 16 C 1.35973 * 113.99776 * 75.00088 * 15 12 11 17 17 C 1.38715 * 119.98650 * 269.72706 * 16 15 12 18 18 C 1.38085 * 120.01355 * 179.72292 * 17 16 15 19 19 C 1.38843 * 119.98657 * 0.55098 * 18 17 16 20 20 N 1.40113 * 120.01660 * 179.74676 * 19 18 17 21 21 C 1.45716 * 133.17652 * 359.62226 * 20 19 18 22 22 C 1.52357 * 87.96312 * 180.02562 * 21 20 19 23 23 C 1.33833 * 133.17644 * 179.97438 * 20 19 18 24 24 O 1.21302 * 133.24474 * 359.96493 * 23 20 19 25 25 C 1.38840 * 119.97051 * 359.72228 * 19 18 17 26 26 C 1.38089 * 119.98655 * 359.97438 * 25 19 18 27 27 H 0.97003 * 120.00216 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.46942 * 59.99308 * 9 7 2 29 29 H 1.09002 * 109.47223 * 299.99680 * 9 7 2 30 30 H 1.09000 * 109.46698 * 60.00210 * 10 9 7 31 31 H 1.08998 * 109.47340 * 299.99828 * 10 9 7 32 32 H 1.09000 * 109.46969 * 60.00683 * 11 10 9 33 33 H 1.09002 * 109.47670 * 300.00278 * 11 10 9 34 34 H 1.08005 * 119.99474 * 0.02562 * 17 16 15 35 35 H 1.08004 * 120.01072 * 180.25126 * 18 17 16 36 36 H 1.09006 * 113.47099 * 294.80827 * 21 20 19 37 37 H 1.09005 * 113.47598 * 65.26224 * 21 20 19 38 38 H 1.09005 * 114.16413 * 246.19389 * 22 21 20 39 39 H 1.08997 * 113.91482 * 114.16975 * 22 21 20 40 40 H 1.08004 * 120.01417 * 179.97438 * 25 19 18 41 41 H 1.07994 * 119.99799 * 179.97438 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 16 2.6591 -6.3659 0.0019 13 8 3.3556 -6.4256 1.2391 14 8 3.3559 -6.4269 -1.2349 15 8 1.7855 -7.6123 0.0032 16 6 1.2046 -7.8816 -1.1963 17 6 -0.0445 -7.3573 -1.4949 18 6 -0.6325 -7.6258 -2.7151 19 6 0.0216 -8.4301 -3.6387 20 7 -0.5768 -8.7072 -4.8749 21 6 -1.8461 -8.3207 -5.4772 22 6 -1.4465 -9.1276 -6.7062 23 6 -0.1959 -9.4294 -5.9353 24 8 0.7944 -10.0852 -6.1819 25 6 1.2693 -8.9592 -3.3369 26 6 1.8590 -8.6849 -2.1188 27 1 -0.4850 0.8401 -0.0004 28 1 0.6247 -2.5570 -0.8896 29 1 0.6241 -2.5567 0.8903 30 1 2.8719 -3.6043 0.8906 31 1 2.8719 -3.6044 -0.8894 32 1 0.8534 -5.0451 -0.8886 33 1 0.8538 -5.0446 0.8914 34 1 -0.5550 -6.7350 -0.7749 35 1 -1.6032 -7.2142 -2.9492 36 1 -2.7145 -8.7241 -4.9563 37 1 -1.9280 -7.2506 -5.6684 38 1 -1.2815 -8.5264 -7.6004 39 1 -2.0762 -9.9988 -6.8867 40 1 1.7785 -9.5853 -4.0547 41 1 2.8293 -9.0967 -1.8837 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000851811253.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:46 Heat of formation + Delta-G solvation = -86.302767 kcal Electronic energy + Delta-G solvation = -26585.606719 eV Core-core repulsion = 22559.581590 eV Total energy + Delta-G solvation = -4026.025129 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.97810 -40.98988 -38.27526 -37.13606 -37.00837 -35.93785 -34.75095 -32.34319 -32.14551 -31.53516 -28.13967 -27.89125 -25.48485 -24.02208 -23.59915 -23.05508 -21.14145 -20.31152 -19.65025 -18.40986 -17.99680 -17.64491 -17.48380 -17.33168 -16.89055 -16.19941 -15.50771 -15.33558 -14.94853 -14.51609 -14.42655 -13.99468 -13.91072 -13.83040 -13.65383 -13.39657 -12.99975 -12.75289 -12.63300 -12.57938 -12.33479 -12.24821 -12.06305 -11.91775 -11.85657 -11.40633 -11.27029 -10.92272 -10.91592 -10.67250 -10.54828 -10.43146 -9.98645 -9.48250 -9.43671 -9.18505 -8.43053 -8.36931 -6.08514 -4.11512 0.06900 0.80358 0.87468 1.99270 2.15920 2.28604 3.25258 3.28680 3.30515 3.34239 3.37693 3.76416 3.87109 4.10509 4.32073 4.35044 4.40070 4.41263 4.62755 4.74477 4.81578 4.86220 4.98215 5.06670 5.09478 5.21814 5.25928 5.28348 5.46357 5.57337 5.80944 5.81877 5.91624 6.03754 6.22767 6.23935 6.38928 6.50040 6.82814 7.53033 7.53960 7.63053 7.89331 8.29767 8.94340 9.53283 11.02700 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.011742 B = 0.002836 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.112111 B = 9870.449803 C =11508.358072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.527 4.527 8 H 0.058 0.942 9 C 0.031 3.969 10 C -0.103 4.103 11 C -0.632 4.632 12 S 2.581 3.419 13 O -0.933 6.933 14 O -0.955 6.955 15 O -0.667 6.667 16 C 0.045 3.955 17 C -0.094 4.094 18 C -0.136 4.136 19 C 0.184 3.816 20 N -0.574 5.574 21 C 0.097 3.903 22 C -0.172 4.172 23 C 0.523 3.477 24 O -0.490 6.490 25 C -0.137 4.137 26 C -0.055 4.055 27 H 0.262 0.738 28 H 0.020 0.980 29 H 0.021 0.979 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.129 0.871 33 H 0.134 0.866 34 H 0.151 0.849 35 H 0.143 0.857 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.146 0.854 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.187 -20.174 -11.028 24.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.565 4.565 8 H 0.076 0.924 9 C -0.007 4.007 10 C -0.142 4.142 11 C -0.761 4.761 12 S 2.680 3.320 13 O -0.931 6.931 14 O -0.954 6.954 15 O -0.625 6.625 16 C 0.002 3.998 17 C -0.115 4.115 18 C -0.156 4.156 19 C 0.090 3.910 20 N -0.300 5.300 21 C -0.025 4.025 22 C -0.212 4.212 23 C 0.310 3.690 24 O -0.362 6.362 25 C -0.158 4.158 26 C -0.076 4.076 27 H 0.072 0.928 28 H 0.039 0.961 29 H 0.039 0.961 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.147 0.853 33 H 0.152 0.848 34 H 0.168 0.832 35 H 0.161 0.839 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.144 0.856 39 H 0.142 0.858 40 H 0.164 0.836 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -7.124 -20.916 -10.870 24.625 hybrid contribution -0.085 1.544 0.335 1.582 sum -7.209 -19.372 -10.536 23.200 Atomic orbital electron populations 1.69945 1.06087 1.26903 1.50553 1.25010 0.94894 0.99358 0.95051 0.86609 0.79578 0.82777 0.78799 1.20114 1.21240 1.20089 1.21213 0.93253 0.90877 1.51182 0.92392 1.19058 0.93505 0.90396 0.97731 1.21490 0.99357 0.91242 1.02155 1.30813 1.16877 1.16905 1.11519 1.05911 0.76130 0.75427 0.74582 1.93610 1.69690 1.84780 1.45045 1.93615 1.71649 1.84387 1.45735 1.85762 1.72432 1.63701 1.40647 1.17948 0.94535 1.04937 0.82340 1.21236 0.93341 0.99463 0.97426 1.20540 1.01505 1.00905 0.92697 1.17908 0.92626 0.95649 0.84825 1.47829 1.20272 1.48397 1.13528 1.22690 0.86574 1.02183 0.91050 1.23360 0.95626 1.02693 0.99510 1.21762 0.87780 0.77736 0.81716 1.90776 1.30846 1.39340 1.75201 1.20820 0.94277 1.03032 0.97642 1.21126 0.99831 0.94976 0.91670 0.92840 0.96130 0.96053 0.91388 0.91400 0.85257 0.84772 0.83174 0.83925 0.88231 0.88020 0.85593 0.85756 0.83598 0.83669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.21 13.29 55.43 0.74 -25.48 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.41 29.54 -169.99 -5.02 16.38 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.53 -14.70 9.11 -34.44 -0.31 -15.01 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.03 0.78 4.97 -27.89 -0.14 0.64 16 10 C -0.10 -2.08 5.16 -26.73 -0.14 -2.22 16 11 C -0.63 -9.82 5.47 37.16 0.20 -9.62 16 12 S 2.58 41.25 5.17 -107.50 -0.56 40.69 16 13 O -0.93 -17.72 18.09 -67.04 -1.21 -18.93 16 14 O -0.96 -16.91 16.26 -67.03 -1.09 -18.01 16 15 O -0.67 -9.41 10.05 -51.98 -0.52 -9.93 16 16 C 0.04 0.58 4.80 -39.22 -0.19 0.39 16 17 C -0.09 -0.98 8.46 -39.46 -0.33 -1.32 16 18 C -0.14 -1.21 9.68 -39.41 -0.38 -1.60 16 19 C 0.18 1.85 6.74 -83.62 -0.56 1.29 16 20 N -0.57 -4.52 3.44 -129.34 -0.44 -4.97 16 21 C 0.10 0.31 8.36 -9.96 -0.08 0.22 16 22 C -0.17 -0.52 8.33 -28.58 -0.24 -0.76 16 23 C 0.52 4.49 9.00 -16.92 -0.15 4.34 16 24 O -0.49 -6.22 16.84 5.54 0.09 -6.13 16 25 C -0.14 -1.58 9.62 -39.41 -0.38 -1.96 16 26 C -0.06 -0.69 9.04 -39.45 -0.36 -1.05 16 27 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 32 H 0.13 1.75 6.62 -51.92 -0.34 1.41 16 33 H 0.13 1.82 8.14 -51.92 -0.42 1.40 16 34 H 0.15 1.25 7.52 -52.48 -0.39 0.86 16 35 H 0.14 0.85 7.76 -52.48 -0.41 0.44 16 36 H 0.10 0.12 8.14 -51.93 -0.42 -0.30 16 37 H 0.10 0.21 8.14 -51.93 -0.42 -0.22 16 38 H 0.13 0.20 8.14 -51.93 -0.42 -0.22 16 39 H 0.12 0.14 8.14 -51.93 -0.42 -0.29 16 40 H 0.15 1.68 6.77 -52.48 -0.36 1.33 16 41 H 0.15 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 364.23 15.07 5.49 5.49 Total: -1.00 -37.80 364.23 -10.96 -48.76 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: -5.27 Total: -2.78 kcal Atomic # 6 Polarization: -21.93 SS G_CDS: -3.16 Total: -25.10 kcal Atomic # 7 Polarization: -30.74 SS G_CDS: 0.29 Total: -30.45 kcal Atomic # 8 Polarization: -50.27 SS G_CDS: -2.73 Total: -53.00 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: 41.25 SS G_CDS: -0.56 Total: 40.69 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -37.80 -10.96 -48.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851811253.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.543 kcal (2) G-P(sol) polarization free energy of solvation -37.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds