Wall clock time and date at job start Tue Mar 31 2020 22:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.33330 * 122.70733 * 124.73829 * 3 2 1 5 5 S 1.76160 * 108.10685 * 179.87997 * 4 3 2 6 6 C 1.70966 * 90.35703 * 0.31882 * 5 4 3 7 7 S 1.76201 * 124.95422 * 179.83666 * 6 5 4 8 8 C 1.81004 * 99.99942 * 359.97270 * 7 6 5 9 9 C 1.50699 * 109.46916 * 179.97438 * 8 7 6 10 10 O 1.21279 * 120.00116 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99733 * 180.02562 * 9 8 7 12 12 C 1.46503 * 119.99890 * 180.02562 * 11 9 8 13 13 C 1.50700 * 109.47495 * 89.99614 * 12 11 9 14 14 H 1.07999 * 119.99545 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00101 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99862 * 179.97438 * 15 13 12 17 17 Si 1.86805 * 119.99893 * 0.02562 * 15 13 12 18 18 H 1.48502 * 109.47089 * 89.99986 * 17 15 13 19 19 H 1.48493 * 109.46979 * 209.99477 * 17 15 13 20 20 H 1.48491 * 109.47102 * 329.99942 * 17 15 13 21 21 C 1.46500 * 119.99965 * 359.97438 * 11 9 8 22 22 C 1.53003 * 109.46610 * 90.00861 * 21 11 9 23 23 C 1.47199 * 109.47325 * 180.02562 * 22 21 11 24 24 N 9.88260 * 125.06164 * 9.46838 * 2 1 3 25 25 N 1.29758 * 110.09637 * 359.81394 * 6 5 4 26 26 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 27 27 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 28 28 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 30 30 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 31 31 H 1.08000 * 125.94511 * 359.97438 * 4 3 2 32 32 H 1.08999 * 109.47215 * 299.99831 * 8 7 6 33 33 H 1.09004 * 109.47061 * 60.00060 * 8 7 6 34 34 H 1.09004 * 109.46784 * 209.99979 * 12 11 9 35 35 H 1.09003 * 109.46697 * 329.99393 * 12 11 9 36 36 H 0.97007 * 119.99517 * 180.02562 * 16 15 13 37 37 H 1.09003 * 109.47206 * 209.99823 * 21 11 9 38 38 H 1.08988 * 109.47319 * 330.00890 * 21 11 9 39 39 H 1.09006 * 109.47200 * 299.99562 * 22 21 11 40 40 H 1.08996 * 109.47422 * 59.99374 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.8752 1.8870 0.9219 5 16 3.2075 3.5776 0.5550 6 6 2.1705 3.4981 -0.8019 7 16 1.8330 4.8386 -1.8945 8 6 2.8525 6.1272 -1.1353 9 6 2.7184 7.4039 -1.9246 10 8 2.0036 7.4393 -2.9037 11 7 3.3929 8.5064 -1.5424 12 6 3.2622 9.7478 -2.3094 13 6 2.1205 10.5617 -1.7570 14 1 1.5492 10.1912 -0.9188 15 6 1.8054 11.7794 -2.3218 16 7 0.8088 12.4895 -1.8401 17 14 2.7932 12.4198 -3.7722 18 1 2.1735 11.9525 -5.0382 19 1 2.8055 13.9045 -3.7458 20 1 4.1858 11.9116 -3.6857 21 6 4.2560 8.4638 -0.3594 22 6 5.6705 8.0542 -0.7746 23 6 6.5376 8.0107 0.4140 24 7 7.2071 7.9790 1.3307 25 7 1.6687 2.3064 -0.9103 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 3.2842 1.3254 1.7488 32 1 2.5209 6.2964 -0.1108 33 1 3.8955 5.8104 -1.1319 34 1 4.1866 10.3204 -2.2341 35 1 3.0663 9.5098 -3.3550 36 1 0.5869 13.3460 -2.2377 37 1 4.2848 9.4495 0.1051 38 1 3.8618 7.7383 0.3520 39 1 5.6418 7.0685 -1.2391 40 1 6.0647 8.7797 -1.4861 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865387728.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:52 Heat of formation + Delta-G solvation = 37.318282 kcal Electronic energy + Delta-G solvation = -23518.616898 eV Core-core repulsion = 19972.998002 eV Total energy + Delta-G solvation = -3545.618896 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 339.082 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.97333 -39.58631 -37.06024 -35.55982 -33.76468 -32.97026 -31.21024 -30.68605 -29.83212 -27.64447 -25.70655 -24.26523 -23.81080 -22.57359 -20.11144 -18.95492 -18.45748 -17.86711 -17.03557 -16.93686 -16.83608 -15.76092 -15.60417 -15.21046 -15.03912 -14.80335 -14.31364 -14.08304 -13.98872 -13.90957 -13.54220 -13.36165 -12.92636 -12.76133 -12.67974 -12.62597 -12.36649 -12.13048 -11.94441 -11.72074 -11.54212 -11.21079 -11.19419 -11.05096 -10.85057 -10.63507 -10.31051 -10.05800 -9.73044 -9.70451 -9.50242 -9.36334 -8.69453 -8.14468 -7.67873 -6.18785 -4.19792 0.38495 0.84056 0.88236 1.44878 2.16089 2.50294 2.56218 2.67213 2.86403 3.20983 3.25517 3.28871 3.36172 3.91856 4.17418 4.29658 4.55849 4.66173 4.70007 4.75081 4.90925 4.92761 5.00403 5.01516 5.14046 5.18692 5.25144 5.33339 5.58609 5.59526 5.78400 5.84356 5.86579 6.05998 6.41244 6.72142 6.96218 7.41022 7.42693 7.45279 7.78268 8.29224 8.50596 8.83993 9.39557 10.94217 Molecular weight = 339.08amu Principal moments of inertia in cm(-1) A = 0.013682 B = 0.002989 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.962134 B = 9364.900791 C =10878.306483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.047 4.047 3 C 0.085 3.915 4 C -0.266 4.266 5 S 0.115 5.885 6 C 0.011 3.989 7 S 0.108 5.892 8 C -0.181 4.181 9 C 0.533 3.467 10 O -0.510 6.510 11 N -0.582 5.582 12 C 0.216 3.784 13 C -0.536 4.536 14 H 0.077 0.923 15 C 0.075 3.925 16 N -0.893 5.893 17 Si 0.875 3.125 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.265 1.265 21 C 0.113 3.887 22 C -0.052 4.052 23 C 0.214 3.786 24 N -0.438 5.438 25 N -0.453 5.453 26 H 0.053 0.947 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.177 0.823 32 H 0.122 0.878 33 H 0.117 0.883 34 H 0.037 0.963 35 H 0.043 0.957 36 H 0.266 0.734 37 H 0.103 0.897 38 H 0.079 0.921 39 H 0.106 0.894 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.194 -20.559 4.699 22.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.087 4.087 3 C -0.049 4.049 4 C -0.409 4.409 5 S 0.366 5.634 6 C -0.375 4.375 7 S 0.340 5.660 8 C -0.334 4.334 9 C 0.317 3.683 10 O -0.385 6.385 11 N -0.314 5.314 12 C 0.096 3.904 13 C -0.575 4.575 14 H 0.095 0.905 15 C -0.128 4.128 16 N -0.530 5.530 17 Si 0.701 3.299 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.190 1.190 21 C -0.014 4.014 22 C -0.093 4.093 23 C -0.104 4.104 24 N -0.115 5.115 25 N -0.172 5.172 26 H 0.072 0.928 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.194 0.806 32 H 0.140 0.860 33 H 0.136 0.864 34 H 0.055 0.945 35 H 0.061 0.939 36 H 0.076 0.924 37 H 0.121 0.879 38 H 0.097 0.903 39 H 0.124 0.876 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 7.247 -19.552 4.495 21.330 hybrid contribution 0.769 -0.433 0.323 0.940 sum 8.016 -19.985 4.818 22.065 Atomic orbital electron populations 1.21686 0.94072 1.01699 1.02897 1.20152 0.96892 0.88660 1.03005 1.20387 0.96290 0.97383 0.90851 1.26631 1.08978 0.97595 1.07665 1.84035 1.45093 1.10543 1.23735 1.29112 1.02586 1.02223 1.03618 1.86743 1.55820 0.94765 1.28695 1.24247 1.05173 0.98376 1.05561 1.19096 0.81050 0.83202 0.84955 1.90770 1.37413 1.83546 1.26781 1.47790 1.43832 1.11569 1.28188 1.19826 0.97928 0.80117 0.92562 1.21260 1.15031 1.03013 1.18146 0.90533 1.24846 0.94837 0.96454 0.96675 1.69887 1.28195 1.13500 1.41456 0.86882 0.80942 0.78384 0.83654 1.19787 1.21046 1.18953 1.21428 0.86917 1.04708 0.88297 1.19881 0.93286 1.05635 0.90523 1.28962 0.93887 0.93103 0.94486 1.81214 1.10103 1.08977 1.11179 1.66403 1.25124 0.99109 1.26593 0.92802 0.91519 0.92252 0.90290 0.90065 0.80591 0.86024 0.86438 0.94543 0.93937 0.92387 0.87902 0.90260 0.87559 0.86342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.81 37.16 0.36 -0.82 16 2 C -0.05 -0.37 6.43 -27.88 -0.18 -0.55 16 3 C 0.09 0.92 6.07 -84.19 -0.51 0.41 16 4 C -0.27 -2.49 11.04 29.02 0.32 -2.17 16 5 S 0.12 1.14 21.54 -107.50 -2.32 -1.17 16 6 C 0.01 0.13 7.59 51.89 0.39 0.53 16 7 S 0.11 1.49 21.45 -107.50 -2.31 -0.81 16 8 C -0.18 -2.15 3.67 36.00 0.13 -2.02 16 9 C 0.53 8.82 7.69 -10.98 -0.08 8.74 16 10 O -0.51 -10.79 15.44 5.56 0.09 -10.70 16 11 N -0.58 -9.41 2.46 -175.06 -0.43 -9.84 16 12 C 0.22 4.44 4.23 -5.19 -0.02 4.42 16 13 C -0.54 -13.89 9.94 -34.44 -0.34 -14.23 16 14 H 0.08 2.20 8.06 -52.49 -0.42 1.77 16 15 C 0.08 2.04 5.47 -17.82 -0.10 1.94 16 16 N -0.89 -26.12 13.96 55.43 0.77 -25.35 16 17 Si 0.87 19.92 27.47 -169.99 -4.67 15.25 16 18 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.26 -5.49 6.54 56.52 0.37 -5.12 16 21 C 0.11 1.28 5.17 -4.04 -0.02 1.26 16 22 C -0.05 -0.44 6.03 -29.52 -0.18 -0.61 16 23 C 0.21 2.24 15.43 -20.77 -0.32 1.92 16 24 N -0.44 -5.84 18.53 42.14 0.78 -5.05 16 25 N -0.45 -6.05 10.41 -10.94 -0.11 -6.16 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.07 0.66 8.07 -51.93 -0.42 0.24 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.08 0.45 8.03 -51.93 -0.42 0.03 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.18 1.14 8.06 -52.49 -0.42 0.72 16 32 H 0.12 1.26 7.23 -51.92 -0.38 0.88 16 33 H 0.12 1.01 7.01 -51.91 -0.36 0.65 16 34 H 0.04 0.69 7.13 -51.93 -0.37 0.32 16 35 H 0.04 0.95 6.85 -51.93 -0.36 0.59 16 36 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.10 1.27 8.07 -51.93 -0.42 0.85 16 38 H 0.08 0.73 6.44 -51.94 -0.33 0.39 16 39 H 0.11 0.67 7.22 -51.93 -0.37 0.29 16 40 H 0.12 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 373.62 15.07 5.63 5.63 Total: -1.00 -33.89 373.62 -8.24 -42.14 By element: Atomic # 1 Polarization: 2.40 SS G_CDS: -5.13 Total: -2.74 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -0.55 Total: -1.19 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: 1.01 Total: -46.40 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.09 Total: -10.70 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -4.67 Total: 15.25 kcal Atomic # 16 Polarization: 2.64 SS G_CDS: -4.62 Total: -1.98 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.89 -8.24 -42.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865387728.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.455 kcal (2) G-P(sol) polarization free energy of solvation -33.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds