Wall clock time and date at job start Tue Mar 31 2020 22:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.33330 * 122.70733 * 124.73829 * 3 2 1 5 5 S 1.76160 * 108.10685 * 179.87997 * 4 3 2 6 6 C 1.70966 * 90.35703 * 0.31882 * 5 4 3 7 7 S 1.76201 * 124.95422 * 179.83666 * 6 5 4 8 8 C 1.81004 * 99.99942 * 359.97270 * 7 6 5 9 9 C 1.50699 * 109.46916 * 179.97438 * 8 7 6 10 10 O 1.21279 * 120.00116 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99733 * 180.02562 * 9 8 7 12 12 C 1.46503 * 119.99890 * 180.02562 * 11 9 8 13 13 C 1.50700 * 109.47495 * 89.99614 * 12 11 9 14 14 H 1.07999 * 119.99545 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00101 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99862 * 179.97438 * 15 13 12 17 17 Si 1.86805 * 119.99893 * 0.02562 * 15 13 12 18 18 H 1.48502 * 109.47089 * 89.99986 * 17 15 13 19 19 H 1.48493 * 109.46979 * 209.99477 * 17 15 13 20 20 H 1.48491 * 109.47102 * 329.99942 * 17 15 13 21 21 C 1.46500 * 119.99965 * 359.97438 * 11 9 8 22 22 C 1.53003 * 109.46610 * 90.00861 * 21 11 9 23 23 C 1.47199 * 109.47325 * 180.02562 * 22 21 11 24 24 N 9.88260 * 125.06164 * 9.46838 * 2 1 3 25 25 N 1.29758 * 110.09637 * 359.81394 * 6 5 4 26 26 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 27 27 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 28 28 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 30 30 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 31 31 H 1.08000 * 125.94511 * 359.97438 * 4 3 2 32 32 H 1.08999 * 109.47215 * 299.99831 * 8 7 6 33 33 H 1.09004 * 109.47061 * 60.00060 * 8 7 6 34 34 H 1.09004 * 109.46784 * 209.99979 * 12 11 9 35 35 H 1.09003 * 109.46697 * 329.99393 * 12 11 9 36 36 H 0.97007 * 119.99517 * 180.02562 * 16 15 13 37 37 H 1.09003 * 109.47206 * 209.99823 * 21 11 9 38 38 H 1.08988 * 109.47319 * 330.00890 * 21 11 9 39 39 H 1.09006 * 109.47200 * 299.99562 * 22 21 11 40 40 H 1.08996 * 109.47422 * 59.99374 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.8752 1.8870 0.9219 5 16 3.2075 3.5776 0.5550 6 6 2.1705 3.4981 -0.8019 7 16 1.8330 4.8386 -1.8945 8 6 2.8525 6.1272 -1.1353 9 6 2.7184 7.4039 -1.9246 10 8 2.0036 7.4393 -2.9037 11 7 3.3929 8.5064 -1.5424 12 6 3.2622 9.7478 -2.3094 13 6 2.1205 10.5617 -1.7570 14 1 1.5492 10.1912 -0.9188 15 6 1.8054 11.7794 -2.3218 16 7 0.8088 12.4895 -1.8401 17 14 2.7932 12.4198 -3.7722 18 1 2.1735 11.9525 -5.0382 19 1 2.8055 13.9045 -3.7458 20 1 4.1858 11.9116 -3.6857 21 6 4.2560 8.4638 -0.3594 22 6 5.6705 8.0542 -0.7746 23 6 6.5376 8.0107 0.4140 24 7 7.2071 7.9790 1.3307 25 7 1.6687 2.3064 -0.9103 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 3.2842 1.3254 1.7488 32 1 2.5209 6.2964 -0.1108 33 1 3.8955 5.8104 -1.1319 34 1 4.1866 10.3204 -2.2341 35 1 3.0663 9.5098 -3.3550 36 1 0.5869 13.3460 -2.2377 37 1 4.2848 9.4495 0.1051 38 1 3.8618 7.7383 0.3520 39 1 5.6418 7.0685 -1.2391 40 1 6.0647 8.7797 -1.4861 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865387728.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:51 Heat of formation + Delta-G solvation = 15.253824 kcal Electronic energy + Delta-G solvation = -23519.573684 eV Core-core repulsion = 19972.998002 eV Total energy + Delta-G solvation = -3546.575683 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 339.082 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.93454 -40.74585 -38.03895 -36.80457 -34.83911 -34.44589 -32.50210 -31.76286 -30.60938 -29.22446 -26.55870 -25.29094 -24.65669 -24.13038 -21.02442 -20.03663 -19.38394 -19.15471 -18.47911 -18.18476 -17.78606 -17.01642 -16.66795 -16.18439 -15.88807 -15.86224 -15.74083 -14.99723 -14.89051 -14.76266 -14.57895 -14.48506 -14.31032 -13.89950 -13.74282 -13.57480 -13.51129 -13.31533 -13.00452 -12.78546 -12.70750 -12.38828 -12.19308 -11.99356 -11.92153 -11.86912 -11.74793 -11.67397 -10.92462 -10.85609 -10.75468 -10.56643 -10.16852 -9.56841 -8.65259 -8.26269 -6.31360 -0.43013 -0.10887 0.04350 0.66636 1.23560 1.40914 1.45562 1.51904 1.54237 1.69283 1.75282 1.87561 2.17462 2.38231 3.01931 3.11676 3.44514 3.52471 3.79683 3.91083 4.07640 4.08570 4.13889 4.28691 4.39603 4.55471 4.56588 4.65949 4.80608 4.86328 4.99429 5.02167 5.09097 5.12858 5.18672 5.40817 5.50718 5.55632 6.27255 6.48721 6.61259 6.64436 6.72750 7.15900 7.34502 8.90482 Molecular weight = 339.08amu Principal moments of inertia in cm(-1) A = 0.013682 B = 0.002989 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.962134 B = 9364.900791 C =10878.306483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.046 4.046 3 C 0.061 3.939 4 C -0.254 4.254 5 S 0.160 5.840 6 C -0.010 4.010 7 S 0.044 5.956 8 C -0.159 4.159 9 C 0.529 3.471 10 O -0.565 6.565 11 N -0.583 5.583 12 C 0.222 3.778 13 C -0.534 4.534 14 H 0.032 0.968 15 C 0.009 3.991 16 N -0.949 5.949 17 Si 0.942 3.058 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.223 1.223 21 C 0.105 3.895 22 C -0.041 4.041 23 C 0.244 3.756 24 N -0.488 5.488 25 N -0.481 5.481 26 H 0.048 0.952 27 H 0.040 0.960 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.082 0.918 31 H 0.210 0.790 32 H 0.140 0.860 33 H 0.158 0.842 34 H 0.068 0.932 35 H 0.030 0.970 36 H 0.265 0.735 37 H 0.092 0.908 38 H 0.104 0.896 39 H 0.139 0.861 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.286 -22.471 5.525 25.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.086 4.086 3 C -0.073 4.073 4 C -0.396 4.396 5 S 0.410 5.590 6 C -0.396 4.396 7 S 0.276 5.724 8 C -0.311 4.311 9 C 0.315 3.685 10 O -0.444 6.444 11 N -0.313 5.313 12 C 0.100 3.900 13 C -0.573 4.573 14 H 0.050 0.950 15 C -0.189 4.189 16 N -0.590 5.590 17 Si 0.765 3.235 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.145 1.145 21 C -0.019 4.019 22 C -0.082 4.082 23 C -0.074 4.074 24 N -0.166 5.166 25 N -0.201 5.201 26 H 0.067 0.933 27 H 0.059 0.941 28 H 0.097 0.903 29 H 0.126 0.874 30 H 0.101 0.899 31 H 0.227 0.773 32 H 0.158 0.842 33 H 0.176 0.824 34 H 0.086 0.914 35 H 0.048 0.952 36 H 0.074 0.926 37 H 0.111 0.889 38 H 0.122 0.878 39 H 0.156 0.844 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 10.390 -21.498 5.366 24.472 hybrid contribution -0.270 0.044 0.205 0.342 sum 10.120 -21.453 5.571 24.366 Atomic orbital electron populations 1.21655 0.94630 1.02484 1.01342 1.20271 0.96374 0.87437 1.04486 1.20813 0.97245 0.98245 0.90994 1.27133 1.07445 0.97451 1.07591 1.83751 1.43123 1.10722 1.21383 1.28774 1.04377 1.01620 1.04803 1.86983 1.57734 0.96964 1.30766 1.24102 1.07084 0.95070 1.04857 1.19749 0.79773 0.84468 0.84502 1.90749 1.39572 1.84691 1.29344 1.47706 1.44469 1.10078 1.29061 1.19520 0.96854 0.81540 0.92081 1.21602 1.15834 1.03337 1.16479 0.95012 1.25843 0.96071 0.97003 0.99948 1.70064 1.30856 1.14265 1.43789 0.85806 0.81390 0.77454 0.78867 1.20561 1.21205 1.14498 1.21673 0.88067 1.05304 0.86893 1.19884 0.90595 1.07874 0.89806 1.29110 0.92946 0.91440 0.93862 1.81264 1.11783 1.10900 1.12655 1.66382 1.25831 0.99883 1.28005 0.93305 0.94076 0.90288 0.87386 0.89924 0.77297 0.84190 0.82442 0.91426 0.95241 0.92563 0.88950 0.87758 0.84360 0.84889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.81 71.98 0.71 -1.47 16 2 C -0.05 -0.63 6.43 29.85 0.19 -0.44 16 3 C 0.06 1.19 6.07 41.41 0.25 1.44 16 4 C -0.25 -3.86 11.04 66.71 0.74 -3.13 16 5 S 0.16 2.66 21.54 -56.49 -1.22 1.44 16 6 C -0.01 -0.25 7.59 130.55 0.99 0.74 16 7 S 0.04 1.22 21.45 -56.49 -1.21 0.01 16 8 C -0.16 -3.47 3.67 71.24 0.26 -3.21 16 9 C 0.53 17.03 7.69 87.66 0.67 17.71 16 10 O -0.56 -24.38 15.44 -3.03 -0.05 -24.43 16 11 N -0.58 -17.82 2.46 -826.14 -2.03 -19.85 16 12 C 0.22 8.86 4.23 85.63 0.36 9.22 16 13 C -0.53 -28.20 9.94 25.60 0.25 -27.95 16 14 H 0.03 1.90 8.06 -2.91 -0.02 1.88 16 15 C 0.01 0.50 5.47 84.65 0.46 0.96 16 16 N -0.95 -57.73 13.96 21.45 0.30 -57.43 16 17 Si 0.94 40.82 27.47 68.60 1.88 42.70 16 18 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 19 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 20 H -0.22 -8.06 6.54 99.48 0.65 -7.41 16 21 C 0.11 2.07 5.17 86.38 0.45 2.51 16 22 C -0.04 -0.51 6.03 28.79 0.17 -0.33 16 23 C 0.24 4.25 15.43 89.45 1.38 5.63 16 24 N -0.49 -11.83 18.53 20.00 0.37 -11.46 16 25 N -0.48 -12.53 10.41 -188.53 -1.96 -14.50 16 26 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.04 0.82 8.07 -2.39 -0.02 0.80 16 28 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.11 0.84 8.03 -2.39 -0.02 0.82 16 30 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.21 1.67 8.06 -2.91 -0.02 1.64 16 32 H 0.14 2.53 7.23 -2.40 -0.02 2.52 16 33 H 0.16 2.08 7.01 -2.39 -0.02 2.07 16 34 H 0.07 2.31 7.13 -2.39 -0.02 2.30 16 35 H 0.03 1.28 6.85 -2.39 -0.02 1.26 16 36 H 0.27 15.17 8.31 -92.70 -0.77 14.40 16 37 H 0.09 2.07 8.07 -2.39 -0.02 2.05 16 38 H 0.10 1.54 6.44 -2.39 -0.02 1.52 16 39 H 0.14 0.95 7.22 -2.38 -0.02 0.93 16 40 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -80.34 373.62 3.99 -76.35 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: 1.01 Total: 5.49 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: 6.89 Total: 1.67 kcal Atomic # 7 Polarization: -99.92 SS G_CDS: -3.32 Total: -103.24 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -0.05 Total: -24.43 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 1.88 Total: 42.70 kcal Atomic # 16 Polarization: 3.88 SS G_CDS: -2.43 Total: 1.45 kcal Total: -80.34 3.99 -76.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865387728.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.602 kcal (2) G-P(sol) polarization free energy of solvation -80.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds