Wall clock time and date at job start Tue Mar 31 2020 22:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86797 * 119.99953 * 2 1 4 4 H 1.48500 * 109.47290 * 240.00298 * 3 2 1 5 5 H 1.48500 * 109.47469 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47103 * 120.00379 * 3 2 1 7 7 C 1.39941 * 119.99992 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00322 * 169.68333 * 7 2 1 9 9 C 1.41399 * 120.00047 * 349.67405 * 7 2 1 10 10 C 1.40732 * 120.24227 * 330.10220 * 9 7 2 11 11 C 1.37598 * 119.74332 * 179.72057 * 10 9 7 12 12 C 1.38657 * 120.24955 * 0.25053 * 11 10 9 13 13 C 1.38615 * 120.50079 * 0.02562 * 12 11 10 14 14 C 1.37642 * 120.24691 * 359.97438 * 13 12 11 15 15 S 1.76203 * 120.12494 * 180.02562 * 14 13 12 16 16 O 1.42101 * 106.40227 * 228.07184 * 15 14 13 17 17 O 1.42100 * 106.40435 * 0.99291 * 15 14 13 18 18 N 1.65600 * 107.21646 * 114.53322 * 15 14 13 19 19 C 1.47092 * 125.62600 * 96.51621 * 18 15 14 20 20 C 1.54482 * 107.29551 * 180.94812 * 19 18 15 21 21 C 1.54270 * 102.86682 * 21.41013 * 20 19 18 22 22 C 1.47587 * 125.63038 * 276.20443 * 18 15 14 23 23 O 1.42753 * 110.83401 * 206.94170 * 21 20 19 24 24 C 1.45024 * 104.51302 * 213.38508 * 23 21 20 25 25 C 1.55000 * 101.87108 * 35.08347 * 24 23 21 26 26 O 1.42387 * 111.04335 * 84.33357 * 21 20 19 27 27 H 0.96998 * 120.00439 * 359.97438 * 1 2 3 28 28 H 1.07999 * 120.13067 * 359.97438 * 10 9 7 29 29 H 1.08001 * 119.87781 * 180.22967 * 11 10 9 30 30 H 1.07995 * 119.75276 * 180.02562 * 12 11 10 31 31 H 1.08005 * 119.87471 * 180.02562 * 13 12 11 32 32 H 1.09002 * 109.88233 * 300.36764 * 19 18 15 33 33 H 1.08999 * 109.88256 * 61.52359 * 19 18 15 34 34 H 1.09003 * 110.73780 * 139.75082 * 20 19 18 35 35 H 1.08996 * 110.73407 * 262.89082 * 20 19 18 36 36 H 1.09002 * 110.37674 * 275.64251 * 22 18 15 37 37 H 1.08994 * 110.38040 * 37.98727 * 22 18 15 38 38 H 1.09000 * 110.94988 * 276.93877 * 24 23 21 39 39 H 1.09004 * 110.94772 * 153.22376 * 24 23 21 40 40 H 1.09006 * 110.68216 * 206.58586 * 25 24 23 41 41 H 1.08991 * 110.69126 * 83.39880 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0959 1.6965 -1.2125 5 1 1.2772 2.7465 0.0006 6 1 3.0960 1.6963 1.2124 7 6 2.0079 -1.2119 -0.0005 8 1 3.0749 -1.2195 -0.1681 9 6 1.3181 -2.4267 0.2184 10 6 0.1610 -2.4503 1.0191 11 6 -0.5055 -3.6371 1.2206 12 6 -0.0382 -4.8076 0.6426 13 6 1.1036 -4.7971 -0.1432 14 6 1.7864 -3.6215 -0.3584 15 16 3.2372 -3.6116 -1.3583 16 8 4.2221 -2.8920 -0.6294 17 8 3.4239 -4.9467 -1.8077 18 7 2.8986 -2.7083 -2.7043 19 6 3.2284 -1.2865 -2.8872 20 6 2.7020 -0.8681 -4.2780 21 6 1.6266 -1.9341 -4.5731 22 6 2.2221 -3.1984 -3.9209 23 8 1.4641 -2.1155 -5.9798 24 6 0.0565 -2.4218 -6.1465 25 6 -0.5933 -1.5446 -5.0462 26 8 0.3810 -1.5816 -3.9800 27 1 -0.4851 0.8400 0.0004 28 1 -0.2048 -1.5398 1.4703 29 1 -1.3959 -3.6571 1.8317 30 1 -0.5679 -5.7345 0.8057 31 1 1.4584 -5.7147 -0.5889 32 1 2.7441 -0.6911 -2.1132 33 1 4.3086 -1.1478 -2.8427 34 1 2.2586 0.1269 -4.2395 35 1 3.4998 -0.9052 -5.0197 36 1 2.9406 -3.6712 -4.5905 37 1 1.4292 -3.8987 -3.6583 38 1 -0.1362 -3.4794 -5.9662 39 1 -0.2920 -2.1269 -7.1364 40 1 -1.5393 -1.9759 -4.7186 41 1 -0.7367 -0.5244 -5.4018 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000866756663.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:09 Heat of formation + Delta-G solvation = -148.800768 kcal Electronic energy + Delta-G solvation = -29582.344697 eV Core-core repulsion = 25553.609452 eV Total energy + Delta-G solvation = -4028.735246 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.79436 -39.37704 -38.23419 -38.08068 -36.75827 -36.08478 -35.64802 -32.06125 -31.79233 -31.34264 -30.37977 -28.50217 -27.30781 -24.31368 -23.64662 -23.27382 -22.91899 -22.05586 -19.99414 -19.48792 -18.85985 -18.28370 -17.81999 -17.49510 -17.09347 -16.69083 -16.54354 -16.06402 -15.65352 -15.51342 -15.23436 -14.95045 -14.67127 -14.50755 -14.41710 -14.18792 -13.78830 -13.72036 -13.40535 -13.31171 -13.12438 -13.05587 -13.00586 -12.90463 -12.84708 -12.62103 -12.44687 -12.23752 -12.14596 -12.08513 -11.65450 -11.15828 -11.13926 -11.00941 -10.66907 -9.89190 -9.73483 -9.40055 -8.75107 -6.58918 -0.29314 0.54608 0.99316 1.37170 1.47243 1.51080 2.12560 2.16578 2.53434 2.64737 2.87620 2.95844 3.27179 3.45532 3.58872 3.69886 3.83105 4.08240 4.18394 4.25685 4.29785 4.31607 4.49249 4.53173 4.55899 4.66631 4.69653 4.75261 4.80248 4.86783 4.95618 5.01598 5.10649 5.17622 5.21787 5.28984 5.51832 5.55712 5.72083 5.87434 6.00427 6.14325 6.20072 6.52485 6.72369 6.85146 8.20068 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.009457 B = 0.007077 C = 0.005904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2960.182320 B = 3955.779495 C = 4741.483153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.054 3.946 3 Si 0.953 3.047 4 H -0.240 1.240 5 H -0.260 1.260 6 H -0.263 1.263 7 C -0.490 4.490 8 H 0.103 0.897 9 C 0.169 3.831 10 C -0.182 4.182 11 C -0.077 4.077 12 C -0.250 4.250 13 C -0.019 4.019 14 C -0.796 4.796 15 S 2.735 3.265 16 O -0.993 6.993 17 O -1.004 7.004 18 N -0.998 5.998 19 C 0.107 3.893 20 C -0.123 4.123 21 C 0.251 3.749 22 C 0.103 3.897 23 O -0.366 6.366 24 C 0.014 3.986 25 C 0.007 3.993 26 O -0.379 6.379 27 H 0.294 0.706 28 H 0.114 0.886 29 H 0.122 0.878 30 H 0.127 0.873 31 H 0.119 0.881 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.115 0.885 36 H 0.101 0.899 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.144 0.856 40 H 0.107 0.893 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.384 1.887 -11.925 12.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.166 4.166 3 Si 0.773 3.227 4 H -0.163 1.163 5 H -0.184 1.184 6 H -0.188 1.188 7 C -0.518 4.518 8 H 0.121 0.879 9 C 0.165 3.835 10 C -0.202 4.202 11 C -0.096 4.096 12 C -0.270 4.270 13 C -0.038 4.038 14 C -0.891 4.891 15 S 2.834 3.166 16 O -0.983 6.983 17 O -0.995 6.995 18 N -0.837 5.837 19 C -0.017 4.017 20 C -0.161 4.161 21 C 0.172 3.828 22 C -0.023 4.023 23 O -0.286 6.286 24 C -0.062 4.062 25 C -0.069 4.069 26 O -0.300 6.300 27 H 0.105 0.895 28 H 0.132 0.868 29 H 0.140 0.860 30 H 0.145 0.855 31 H 0.137 0.863 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.114 0.886 35 H 0.133 0.867 36 H 0.119 0.881 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.161 0.839 40 H 0.126 0.874 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.618 1.648 -11.673 11.900 hybrid contribution -0.864 0.604 0.650 1.239 sum -2.482 2.251 -11.023 11.522 Atomic orbital electron populations 1.69801 1.08699 1.31156 1.31973 1.26589 0.95415 1.03822 0.90765 0.85666 0.79601 0.76143 0.81294 1.16271 1.18414 1.18791 1.20437 0.97411 0.91261 1.42676 0.87916 1.17297 0.90495 0.90483 0.85247 1.21569 0.99203 0.97324 1.02128 1.21238 0.98057 0.92978 0.97290 1.20865 1.00358 0.98277 1.07535 1.20547 0.93599 0.95234 0.94453 1.30157 1.28925 1.01529 1.28453 0.99920 0.73947 0.70972 0.71730 1.93427 1.59459 1.73770 1.71691 1.93412 1.86843 1.37082 1.82130 1.58162 1.74555 1.21773 1.29171 1.22130 1.00612 0.80440 0.98559 1.22845 0.98114 0.98870 0.96317 1.23597 0.86869 0.93512 0.78847 1.22465 0.96888 0.96342 0.86597 1.89124 1.27595 1.90786 1.21080 1.24730 0.78988 1.00420 1.02039 1.24571 0.93682 1.01761 0.86863 1.89077 1.18233 1.90340 1.32326 0.89500 0.86800 0.85995 0.85518 0.86281 0.90627 0.90351 0.88639 0.86670 0.88093 0.91110 0.89743 0.83856 0.87445 0.89370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -37.97 10.90 21.82 0.24 -37.74 16 2 C 0.05 2.53 4.94 85.26 0.42 2.95 16 3 Si 0.95 35.64 29.08 68.60 1.99 37.64 16 4 H -0.24 -8.30 7.11 99.48 0.71 -7.59 16 5 H -0.26 -9.00 7.11 99.48 0.71 -8.29 16 6 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 7 C -0.49 -25.13 6.07 23.46 0.14 -24.99 16 8 H 0.10 5.34 4.76 -2.91 -0.01 5.33 16 9 C 0.17 8.97 5.54 -21.29 -0.12 8.85 16 10 C -0.18 -9.31 8.65 22.73 0.20 -9.11 16 11 C -0.08 -3.47 10.02 22.22 0.22 -3.25 16 12 C -0.25 -10.91 10.05 22.46 0.23 -10.68 16 13 C -0.02 -0.87 9.54 22.22 0.21 -0.65 16 14 C -0.80 -40.01 5.96 22.73 0.14 -39.87 16 15 S 2.74 127.38 5.28 -56.49 -0.30 127.08 16 16 O -0.99 -50.23 15.17 -128.00 -1.94 -52.17 16 17 O -1.00 -47.50 16.64 -128.00 -2.13 -49.63 16 18 N -1.00 -39.94 3.64 -506.84 -1.85 -41.79 16 19 C 0.11 3.91 6.41 86.77 0.56 4.46 16 20 C -0.12 -3.58 6.40 31.53 0.20 -3.37 16 21 C 0.25 7.76 1.31 31.44 0.04 7.80 16 22 C 0.10 3.54 6.53 86.59 0.57 4.11 16 23 O -0.37 -9.29 11.12 -126.23 -1.40 -10.70 16 24 C 0.01 0.26 7.96 72.67 0.58 0.84 16 25 C 0.01 0.16 8.08 72.67 0.59 0.75 16 26 O -0.38 -13.18 11.02 -126.23 -1.39 -14.57 16 27 H 0.29 12.69 8.30 -92.71 -0.77 11.92 16 28 H 0.11 5.90 6.30 -2.91 -0.02 5.88 16 29 H 0.12 4.65 8.06 -2.91 -0.02 4.63 16 30 H 0.13 4.59 8.06 -2.91 -0.02 4.57 16 31 H 0.12 5.12 7.32 -2.91 -0.02 5.09 16 32 H 0.08 3.13 4.62 -2.39 -0.01 3.11 16 33 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 34 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 35 H 0.12 2.71 8.14 -2.39 -0.02 2.69 16 36 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 37 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 38 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.14 1.62 8.14 -2.38 -0.02 1.60 16 40 H 0.11 2.24 8.14 -2.38 -0.02 2.22 16 41 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -66.63 342.33 -1.75 -68.37 By element: Atomic # 1 Polarization: 34.61 SS G_CDS: 1.07 Total: 35.67 kcal Atomic # 6 Polarization: -66.15 SS G_CDS: 3.97 Total: -62.18 kcal Atomic # 7 Polarization: -77.92 SS G_CDS: -1.61 Total: -79.53 kcal Atomic # 8 Polarization: -120.19 SS G_CDS: -6.87 Total: -127.06 kcal Atomic # 14 Polarization: 35.64 SS G_CDS: 1.99 Total: 37.64 kcal Atomic # 16 Polarization: 127.38 SS G_CDS: -0.30 Total: 127.08 kcal Total: -66.63 -1.75 -68.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866756663.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.428 kcal (2) G-P(sol) polarization free energy of solvation -66.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds