Wall clock time and date at job start Tue Mar 31 2020 22:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 110.62475 * 2 1 4 4 C 1.54367 * 110.70378 * 123.09317 * 2 1 3 5 5 O 1.45951 * 105.06848 * 136.20826 * 4 2 1 6 6 C 1.34559 * 108.40257 * 327.55813 * 5 4 2 7 7 O 1.20823 * 125.94548 * 213.33698 * 6 5 4 8 8 C 1.51507 * 108.11098 * 33.60243 * 6 5 4 9 9 H 1.08994 * 110.40642 * 220.56843 * 8 6 5 10 10 N 1.46505 * 110.40389 * 98.13719 * 8 6 5 11 11 S 1.65596 * 119.99597 * 100.07776 * 10 8 6 12 12 O 1.42099 * 106.40250 * 178.66405 * 11 10 8 13 13 O 1.42098 * 106.40449 * 311.57933 * 11 10 8 14 14 C 1.76198 * 107.22437 * 65.12090 * 11 10 8 15 15 C 1.37645 * 120.12919 * 246.72417 * 14 11 10 16 16 C 1.38619 * 120.24516 * 179.69410 * 15 14 11 17 17 C 1.38657 * 120.49848 * 0.60156 * 16 15 14 18 18 C 1.37589 * 120.25151 * 359.67489 * 17 16 15 19 19 C 1.40699 * 120.12691 * 66.99232 * 14 11 10 20 20 C 1.41397 * 120.24201 * 0.02738 * 19 14 11 21 21 H 1.07993 * 120.00298 * 332.45423 * 20 19 14 22 22 C 1.39946 * 119.99702 * 152.45382 * 20 19 14 23 23 N 1.30822 * 120.00139 * 348.11121 * 22 20 19 24 24 Si 1.86804 * 120.00003 * 168.10746 * 22 20 19 25 25 H 1.48503 * 109.46731 * 89.99779 * 24 22 20 26 26 H 1.48495 * 109.47165 * 209.99932 * 24 22 20 27 27 H 1.48496 * 109.47110 * 330.00104 * 24 22 20 28 28 H 1.09000 * 109.46783 * 298.35624 * 1 2 3 29 29 H 1.09001 * 109.47526 * 58.36032 * 1 2 3 30 30 H 1.09000 * 109.47142 * 178.36153 * 1 2 3 31 31 H 1.09004 * 109.47083 * 181.64312 * 3 2 1 32 32 H 1.08998 * 109.47112 * 301.64227 * 3 2 1 33 33 H 1.08996 * 109.46956 * 61.63940 * 3 2 1 34 34 H 1.09002 * 110.32077 * 17.31253 * 4 2 1 35 35 H 1.08996 * 110.40886 * 255.15058 * 4 2 1 36 36 H 0.96994 * 120.00125 * 280.07063 * 10 8 6 37 37 H 1.07995 * 119.87515 * 359.97438 * 15 14 11 38 38 H 1.07997 * 119.74206 * 180.30041 * 16 15 14 39 39 H 1.07997 * 119.86961 * 179.69921 * 17 16 15 40 40 H 1.08006 * 120.12475 * 180.02562 * 18 17 16 41 41 H 0.97002 * 120.00388 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0689 1.4320 0.0000 4 6 2.0757 -0.7884 1.2097 5 8 3.1615 -1.6029 0.6733 6 6 2.8554 -1.9377 -0.5936 7 8 3.1508 -2.9713 -1.1452 8 6 2.0817 -0.7902 -1.2101 9 1 1.2623 -1.1691 -1.8209 10 7 2.9713 0.0529 -2.0127 11 16 3.0084 -0.1154 -3.6596 12 8 3.9322 0.8510 -4.1410 13 8 3.1341 -1.5070 -3.9181 14 6 1.4256 0.3627 -4.2687 15 6 0.5978 -0.5712 -4.8494 16 6 -0.6504 -0.1990 -5.3236 17 6 -1.0746 1.1178 -5.2304 18 6 -0.2615 2.0692 -4.6589 19 6 1.0053 1.7017 -4.1684 20 6 1.8497 2.6710 -3.5794 21 1 2.5737 2.3755 -2.8345 22 6 1.7473 4.0132 -3.9619 23 7 1.0463 4.3412 -5.0166 24 14 2.6116 5.3367 -2.9663 25 1 3.9800 5.5459 -3.5037 26 1 1.8446 6.6049 -3.0576 27 1 2.6972 4.9111 -1.5462 28 1 -0.3633 0.4881 0.9044 29 1 -0.3634 0.5391 -0.8749 30 1 -0.3633 -1.0272 -0.0294 31 1 3.1583 1.4102 -0.0295 32 1 1.6923 1.9619 -0.8749 33 1 1.7400 1.9439 0.9043 34 1 1.2967 -1.4250 1.6294 35 1 2.4550 -0.1048 1.9692 36 1 3.5385 0.7096 -1.5793 37 1 0.9202 -1.5986 -4.9317 38 1 -1.2953 -0.9394 -5.7734 39 1 -2.0472 1.3975 -5.6076 40 1 -0.5942 3.0943 -4.5870 41 1 0.9756 5.2716 -5.2820 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867382469.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:13 Heat of formation + Delta-G solvation = -153.144741 kcal Electronic energy + Delta-G solvation = -29344.351322 eV Core-core repulsion = 25315.427708 eV Total energy + Delta-G solvation = -4028.923615 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.34946 -39.38643 -38.92065 -38.11181 -37.15316 -36.73605 -35.66857 -34.19348 -32.02791 -31.34399 -28.91913 -27.78369 -27.49645 -27.30069 -23.45878 -22.95451 -22.46337 -20.97229 -20.41177 -19.50459 -18.78842 -18.56793 -17.97406 -17.64666 -17.47111 -17.09836 -16.39268 -16.01200 -15.78456 -15.43419 -15.10714 -14.95021 -14.78919 -14.53660 -14.45132 -14.08240 -13.69519 -13.32970 -13.28872 -13.06319 -12.99748 -12.98476 -12.89586 -12.85266 -12.76670 -12.47108 -12.28444 -12.22645 -12.15159 -12.11027 -11.75397 -11.63813 -11.41838 -11.16428 -11.07270 -10.29696 -9.83710 -9.42624 -8.77775 -6.59184 -0.34044 0.53064 0.74201 0.99423 1.40237 1.51723 1.55571 2.10552 2.17705 2.35350 2.64855 2.86660 2.95895 3.12746 3.47117 3.62850 3.70630 3.82859 3.99142 4.25407 4.34467 4.45975 4.52759 4.62742 4.65322 4.73939 4.90422 4.95513 4.99635 5.06649 5.12561 5.16992 5.30543 5.41444 5.49475 5.52835 5.59945 5.72932 5.82765 5.96569 6.03245 6.09857 6.26950 6.49373 6.69089 6.84857 8.17212 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.011241 B = 0.006168 C = 0.005256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.369363 B = 4538.826225 C = 5326.099113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.091 4.091 3 C -0.150 4.150 4 C 0.058 3.942 5 O -0.358 6.358 6 C 0.473 3.527 7 O -0.471 6.471 8 C 0.103 3.897 9 H 0.119 0.881 10 N -1.089 6.089 11 S 2.703 3.297 12 O -0.991 6.991 13 O -1.005 7.005 14 C -0.787 4.787 15 C -0.018 4.018 16 C -0.248 4.248 17 C -0.074 4.074 18 C -0.180 4.180 19 C 0.168 3.832 20 C -0.461 4.461 21 H 0.096 0.904 22 C 0.041 3.959 23 N -0.805 5.805 24 Si 0.968 3.032 25 H -0.274 1.274 26 H -0.262 1.262 27 H -0.230 1.230 28 H 0.098 0.902 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.097 0.903 34 H 0.114 0.886 35 H 0.147 0.853 36 H 0.427 0.573 37 H 0.114 0.886 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.119 0.881 41 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.171 0.159 14.419 15.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.093 4.093 3 C -0.208 4.208 4 C -0.015 4.015 5 O -0.275 6.275 6 C 0.310 3.690 7 O -0.353 6.353 8 C -0.007 4.007 9 H 0.137 0.863 10 N -0.851 5.851 11 S 2.801 3.199 12 O -0.982 6.982 13 O -0.995 6.995 14 C -0.883 4.883 15 C -0.038 4.038 16 C -0.268 4.268 17 C -0.093 4.093 18 C -0.200 4.200 19 C 0.163 3.837 20 C -0.489 4.489 21 H 0.114 0.886 22 C -0.178 4.178 23 N -0.429 5.429 24 Si 0.787 3.213 25 H -0.199 1.199 26 H -0.186 1.186 27 H -0.152 1.152 28 H 0.116 0.884 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.116 0.884 34 H 0.132 0.868 35 H 0.165 0.835 36 H 0.266 0.734 37 H 0.132 0.868 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.136 0.864 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.245 -0.645 13.582 13.979 hybrid contribution -0.040 0.969 -0.427 1.060 sum -3.286 0.325 13.155 13.563 Atomic orbital electron populations 1.21880 0.90248 1.03280 1.04229 1.22116 0.98754 0.96977 0.91449 1.21994 1.01075 0.93037 1.04666 1.24739 0.87612 0.93505 0.95598 1.87256 1.44404 1.67502 1.28360 1.24042 0.76246 0.86416 0.82289 1.90718 1.50745 1.27411 1.66376 1.22190 0.92532 0.89842 0.96168 0.86280 1.55460 1.54779 1.49916 1.24927 1.00893 0.74664 0.71854 0.72445 1.93507 1.63347 1.62653 1.78648 1.93493 1.87337 1.34198 1.84458 1.29868 1.24161 1.03492 1.30797 1.20526 0.93502 0.96987 0.92776 1.20841 0.97871 0.96689 1.11431 1.21231 0.98720 0.93308 0.96013 1.21595 0.94603 0.99193 1.04578 1.17253 0.91370 0.89093 0.85994 1.20118 1.15805 0.92650 1.20352 0.88611 1.26795 0.94409 1.01832 0.94730 1.69816 1.31444 1.21734 1.19924 0.85388 0.78354 0.76690 0.80836 1.19915 1.18636 1.15188 0.88360 0.92674 0.91294 0.91968 0.91643 0.88430 0.86770 0.83495 0.73361 0.86765 0.85839 0.86032 0.86354 0.89372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 8.30 71.98 0.60 -1.72 16 2 C -0.09 -1.77 1.09 -51.14 -0.06 -1.83 16 3 C -0.15 -2.90 7.32 71.98 0.53 -2.38 16 4 C 0.06 0.86 7.04 72.45 0.51 1.37 16 5 O -0.36 -9.18 11.17 -55.05 -0.61 -9.80 16 6 C 0.47 15.47 8.13 71.49 0.58 16.06 16 7 O -0.47 -19.61 18.00 21.56 0.39 -19.22 16 8 C 0.10 3.05 3.22 45.08 0.15 3.19 16 9 H 0.12 3.68 7.58 -2.39 -0.02 3.67 16 10 N -1.09 -37.26 4.17 -169.01 -0.71 -37.97 16 11 S 2.70 120.18 4.89 -56.49 -0.28 119.90 16 12 O -0.99 -49.82 16.37 -128.00 -2.10 -51.92 16 13 O -1.00 -48.79 16.72 -128.00 -2.14 -50.93 16 14 C -0.79 -36.44 5.91 22.73 0.13 -36.31 16 15 C -0.02 -0.79 9.54 22.22 0.21 -0.58 16 16 C -0.25 -10.09 10.05 22.46 0.23 -9.87 16 17 C -0.07 -3.07 10.02 22.22 0.22 -2.85 16 18 C -0.18 -8.37 8.67 22.73 0.20 -8.17 16 19 C 0.17 8.05 5.56 -21.29 -0.12 7.93 16 20 C -0.46 -21.47 7.38 23.46 0.17 -21.30 16 21 H 0.10 4.09 5.09 -2.91 -0.01 4.08 16 22 C 0.04 1.83 5.24 85.26 0.45 2.28 16 23 N -0.81 -37.90 10.82 21.83 0.24 -37.67 16 24 Si 0.97 33.41 29.58 68.60 2.03 35.44 16 25 H -0.27 -9.94 7.11 99.48 0.71 -9.23 16 26 H -0.26 -8.51 7.11 99.48 0.71 -7.80 16 27 H -0.23 -6.94 7.11 99.48 0.71 -6.23 16 28 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.06 1.16 6.62 -2.39 -0.02 1.15 16 32 H 0.06 1.66 7.05 -2.39 -0.02 1.64 16 33 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.11 1.12 7.81 -2.39 -0.02 1.10 16 35 H 0.15 1.22 7.82 -2.39 -0.02 1.20 16 36 H 0.43 12.64 6.26 -96.75 -0.61 12.04 16 37 H 0.11 4.80 7.32 -2.91 -0.02 4.78 16 38 H 0.12 4.24 8.06 -2.91 -0.02 4.22 16 39 H 0.12 4.26 8.06 -2.91 -0.02 4.24 16 40 H 0.12 5.62 6.17 -2.91 -0.02 5.60 16 41 H 0.30 12.48 8.30 -92.71 -0.77 11.71 16 Total: -1.00 -70.81 349.21 1.10 -69.71 By element: Atomic # 1 Polarization: 36.14 SS G_CDS: 0.48 Total: 36.62 kcal Atomic # 6 Polarization: -57.97 SS G_CDS: 3.80 Total: -54.17 kcal Atomic # 7 Polarization: -75.17 SS G_CDS: -0.47 Total: -75.63 kcal Atomic # 8 Polarization: -127.40 SS G_CDS: -4.46 Total: -131.86 kcal Atomic # 14 Polarization: 33.41 SS G_CDS: 2.03 Total: 35.44 kcal Atomic # 16 Polarization: 120.18 SS G_CDS: -0.28 Total: 119.90 kcal Total: -70.81 1.10 -69.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867382469.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.435 kcal (2) G-P(sol) polarization free energy of solvation -70.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds