Wall clock time and date at job start Tue Mar 31 2020 21:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00133 * 2 1 4 4 H 1.48498 * 109.47002 * 269.99625 * 3 2 1 5 5 H 1.48502 * 109.46961 * 29.99238 * 3 2 1 6 6 H 1.48505 * 109.47293 * 149.99350 * 3 2 1 7 7 C 1.37878 * 119.99794 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00122 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99882 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47376 * 180.02562 * 9 7 2 11 11 S 1.81393 * 109.47426 * 180.02562 * 10 9 7 12 12 O 1.42099 * 110.54795 * 68.37107 * 11 10 9 13 13 O 1.42102 * 110.54145 * 291.62218 * 11 10 9 14 14 N 1.65603 * 104.45078 * 179.97438 * 11 10 9 15 15 C 1.46501 * 119.99898 * 64.99720 * 14 11 10 16 16 C 1.52999 * 109.46692 * 165.00001 * 15 14 11 17 17 H 1.08996 * 109.52076 * 305.06766 * 16 15 14 18 18 C 1.53581 * 109.49179 * 184.99865 * 16 15 14 19 19 C 1.51843 * 107.16826 * 181.34070 * 18 16 15 20 20 O 1.21299 * 121.73455 * 219.97996 * 19 18 16 21 21 C 1.47349 * 116.52254 * 39.99920 * 19 18 16 22 22 C 1.39621 * 120.73541 * 168.08898 * 21 19 18 23 23 C 1.37832 * 119.59234 * 179.67548 * 22 21 19 24 24 C 1.38622 * 120.19302 * 359.97438 * 23 22 21 25 25 C 1.38034 * 120.70647 * 0.13472 * 24 23 22 26 26 C 1.38833 * 120.08184 * 0.24387 * 25 24 23 27 27 O 1.35336 * 120.01259 * 179.76806 * 26 25 24 28 28 H 0.96997 * 120.00394 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.46679 * 60.00861 * 9 7 2 30 30 H 1.09006 * 109.47371 * 300.00951 * 9 7 2 31 31 H 1.08995 * 109.47436 * 59.99889 * 10 9 7 32 32 H 1.09006 * 109.47009 * 300.00391 * 10 9 7 33 33 H 0.96998 * 119.99589 * 244.99995 * 14 11 10 34 34 H 1.09001 * 109.47124 * 45.00083 * 15 14 11 35 35 H 1.08997 * 109.47040 * 284.99878 * 15 14 11 36 36 H 1.09001 * 109.91233 * 61.92230 * 18 16 15 37 37 H 1.08998 * 109.97913 * 300.79154 * 18 16 15 38 38 H 1.08001 * 120.20127 * 359.65093 * 22 21 19 39 39 H 1.08005 * 119.90160 * 179.97438 * 23 22 21 40 40 H 1.07996 * 119.64797 * 180.12169 * 24 23 22 41 41 H 1.08002 * 119.95517 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 16 5.8355 -2.6366 0.0025 12 8 6.3332 -2.1466 1.2399 13 8 6.3351 -2.1458 -1.2340 14 7 6.2487 -4.2403 0.0029 15 6 5.9131 -5.0835 -1.1471 16 6 6.7098 -6.3875 -1.0730 17 1 7.7731 -6.1608 -0.9952 18 6 6.4540 -7.2171 -2.3400 19 6 7.2398 -8.5084 -2.1965 20 8 7.8279 -9.0049 -3.1340 21 6 7.2503 -9.1271 -0.8592 22 6 7.7276 -10.4266 -0.6779 23 6 7.7328 -10.9799 0.5845 24 6 7.2674 -10.2502 1.6674 25 6 6.7912 -8.9656 1.4994 26 6 6.7693 -8.3912 0.2356 27 8 6.2977 -7.1333 0.0718 28 1 -0.4850 0.8400 -0.0004 29 1 3.8744 -0.6802 0.8913 30 1 3.8752 -0.6803 -0.8888 31 1 3.6586 -3.1502 -0.8892 32 1 3.6578 -3.1506 0.8907 33 1 6.7129 -4.6212 0.7647 34 1 6.1624 -4.5572 -2.0686 35 1 4.8466 -5.3080 -1.1341 36 1 6.7969 -6.6693 -3.2178 37 1 5.3906 -7.4378 -2.4322 38 1 8.0902 -10.9949 -1.5217 39 1 8.1006 -11.9848 0.7304 40 1 7.2773 -10.6916 2.6529 41 1 6.4311 -8.4082 2.3515 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867790051.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:49 Heat of formation + Delta-G solvation = -124.080508 kcal Electronic energy + Delta-G solvation = -26500.509100 eV Core-core repulsion = 22472.845805 eV Total energy + Delta-G solvation = -4027.663295 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.47340 -38.93006 -38.32781 -36.80812 -35.72294 -35.48224 -33.98630 -32.75771 -31.51782 -31.31551 -30.71349 -27.01124 -26.01375 -24.35924 -23.14373 -22.47956 -21.35346 -20.06671 -19.13417 -18.64900 -17.71168 -17.41705 -17.31043 -16.74600 -16.15700 -15.60815 -15.52154 -15.35015 -15.06914 -14.90669 -14.61433 -14.53567 -14.33967 -14.27436 -13.67150 -13.37490 -13.17011 -12.82884 -12.66458 -12.55417 -12.24808 -11.93525 -11.80687 -11.76545 -11.71593 -11.49958 -11.28449 -11.23932 -11.18033 -10.48530 -10.20075 -10.17218 -9.91432 -9.55945 -9.54599 -9.25100 -8.78531 -8.68788 -6.18991 -4.20545 0.16650 0.57818 0.89490 1.86691 2.46680 2.89441 3.24682 3.28154 3.32361 3.36104 3.41826 3.96893 4.02123 4.11028 4.22536 4.33563 4.39600 4.48869 4.55138 4.64662 4.76039 4.82323 4.90918 5.03015 5.11499 5.13850 5.27894 5.35147 5.43386 5.46542 5.48119 5.66548 5.68567 5.83345 5.97110 6.18027 6.23838 6.78008 6.82762 6.87796 6.94021 6.96613 7.51940 8.33683 8.82033 9.40537 10.93344 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.019937 B = 0.002420 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.119928 B =11567.892755 C =11718.590352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.072 3.928 3 Si 0.870 3.130 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.520 4.520 8 H 0.078 0.922 9 C -0.007 4.007 10 C -0.582 4.582 11 S 2.591 3.409 12 O -0.963 6.963 13 O -0.966 6.966 14 N -1.124 6.124 15 C 0.124 3.876 16 C 0.095 3.905 17 H 0.090 0.910 18 C -0.200 4.200 19 C 0.404 3.596 20 O -0.444 6.444 21 C -0.254 4.254 22 C -0.027 4.027 23 C -0.168 4.168 24 C -0.050 4.050 25 C -0.161 4.161 26 C 0.184 3.816 27 O -0.302 6.302 28 H 0.267 0.733 29 H 0.033 0.967 30 H 0.028 0.972 31 H 0.125 0.875 32 H 0.129 0.871 33 H 0.418 0.582 34 H 0.107 0.893 35 H 0.084 0.916 36 H 0.119 0.881 37 H 0.122 0.878 38 H 0.135 0.865 39 H 0.131 0.869 40 H 0.135 0.865 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.257 -21.726 0.353 26.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.131 4.131 3 Si 0.696 3.304 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.559 4.559 8 H 0.096 0.904 9 C -0.047 4.047 10 C -0.715 4.715 11 S 2.688 3.312 12 O -0.954 6.954 13 O -0.956 6.956 14 N -0.882 5.882 15 C -0.003 4.003 16 C 0.037 3.963 17 H 0.108 0.892 18 C -0.239 4.239 19 C 0.281 3.719 20 O -0.319 6.319 21 C -0.256 4.256 22 C -0.045 4.045 23 C -0.186 4.186 24 C -0.068 4.068 25 C -0.180 4.180 26 C 0.137 3.863 27 O -0.215 6.215 28 H 0.076 0.924 29 H 0.051 0.949 30 H 0.047 0.953 31 H 0.143 0.857 32 H 0.147 0.853 33 H 0.252 0.748 34 H 0.125 0.875 35 H 0.103 0.897 36 H 0.137 0.863 37 H 0.140 0.860 38 H 0.153 0.847 39 H 0.149 0.851 40 H 0.153 0.847 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 15.837 -20.946 -0.202 26.260 hybrid contribution -0.122 0.218 0.222 0.334 sum 15.715 -20.728 0.020 26.012 Atomic orbital electron populations 1.69876 1.06220 1.27291 1.49916 1.24990 0.94824 0.99190 0.94124 0.86922 0.80699 0.83684 0.79119 1.19674 1.20766 1.18606 1.20842 0.87797 0.94910 1.52357 0.90393 1.19418 0.99934 0.87417 0.97913 1.30287 1.20903 1.09261 1.11047 1.05621 0.79153 0.72206 0.74234 1.93571 1.79220 1.77559 1.45029 1.93551 1.78477 1.77833 1.45722 1.55699 1.75290 1.29945 1.27298 1.21399 1.00062 0.88465 0.90369 1.22766 1.00239 0.90426 0.82831 0.89191 1.23102 1.04147 0.96222 1.00399 1.22389 0.77214 0.85503 0.86778 1.90566 1.36229 1.63014 1.42062 1.20575 1.12288 0.97926 0.94793 1.21178 0.92707 0.92731 0.97867 1.21123 1.04009 1.01075 0.92406 1.21250 0.93431 0.92723 0.99434 1.20688 1.05457 0.96792 0.95044 1.19164 0.90394 0.83736 0.92975 1.85779 1.66722 1.23695 1.45297 0.92355 0.94892 0.95333 0.85689 0.85309 0.74812 0.87487 0.89739 0.86268 0.86042 0.84710 0.85103 0.84720 0.84119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.69 13.96 55.43 0.77 -25.92 16 2 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 3 Si 0.87 21.13 27.47 -169.99 -4.67 16.46 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.26 -6.14 6.54 56.52 0.37 -5.77 16 7 C -0.52 -14.17 9.66 -34.44 -0.33 -14.50 16 8 H 0.08 2.23 7.99 -52.49 -0.42 1.81 16 9 C -0.01 -0.17 4.05 -27.88 -0.11 -0.28 16 10 C -0.58 -9.89 6.01 37.16 0.22 -9.66 16 11 S 2.59 40.19 5.46 -107.50 -0.59 39.60 16 12 O -0.96 -17.94 18.08 -57.54 -1.04 -18.98 16 13 O -0.97 -17.38 17.50 -57.54 -1.01 -18.38 16 14 N -1.12 -12.22 5.85 -10.61 -0.06 -12.28 16 15 C 0.12 1.07 5.80 -4.04 -0.02 1.05 16 16 C 0.09 0.74 2.87 -26.43 -0.08 0.67 16 17 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 18 C -0.20 -1.43 5.74 -27.02 -0.16 -1.59 16 19 C 0.40 3.89 6.98 -30.04 -0.21 3.68 16 20 O -0.44 -5.44 17.42 5.54 0.10 -5.34 16 21 C -0.25 -2.33 5.83 -104.86 -0.61 -2.94 16 22 C -0.03 -0.21 9.65 -39.21 -0.38 -0.59 16 23 C -0.17 -1.06 10.03 -39.59 -0.40 -1.46 16 24 C -0.05 -0.30 10.01 -39.51 -0.40 -0.70 16 25 C -0.16 -1.21 9.98 -39.44 -0.39 -1.60 16 26 C 0.18 1.64 6.56 -38.54 -0.25 1.38 16 27 O -0.30 -2.70 9.66 -17.70 -0.17 -2.87 16 28 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.03 0.76 7.20 -51.93 -0.37 0.38 16 30 H 0.03 0.64 7.57 -51.93 -0.39 0.25 16 31 H 0.12 1.86 8.14 -51.93 -0.42 1.43 16 32 H 0.13 2.01 8.14 -51.92 -0.42 1.59 16 33 H 0.42 3.98 8.48 -34.47 -0.29 3.69 16 34 H 0.11 0.85 7.70 -51.93 -0.40 0.45 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.12 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.12 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.14 1.00 7.82 -52.49 -0.41 0.59 16 39 H 0.13 0.53 8.06 -52.48 -0.42 0.11 16 40 H 0.13 0.47 8.06 -52.49 -0.42 0.04 16 41 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 LS Contribution 362.88 15.07 5.47 5.47 Total: -1.00 -36.44 362.88 -9.67 -46.11 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -5.26 Total: 0.77 kcal Atomic # 6 Polarization: -21.42 SS G_CDS: -3.21 Total: -24.63 kcal Atomic # 7 Polarization: -38.91 SS G_CDS: 0.71 Total: -38.20 kcal Atomic # 8 Polarization: -43.45 SS G_CDS: -2.12 Total: -45.57 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.67 Total: 16.46 kcal Atomic # 16 Polarization: 40.19 SS G_CDS: -0.59 Total: 39.60 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -36.44 -9.67 -46.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867790051.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.974 kcal (2) G-P(sol) polarization free energy of solvation -36.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds