Wall clock time and date at job start Tue Mar 31 2020 21:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00133 * 2 1 4 4 H 1.48498 * 109.47002 * 269.99625 * 3 2 1 5 5 H 1.48502 * 109.46961 * 29.99238 * 3 2 1 6 6 H 1.48505 * 109.47293 * 149.99350 * 3 2 1 7 7 C 1.37878 * 119.99794 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00122 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99882 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47376 * 180.02562 * 9 7 2 11 11 S 1.81393 * 109.47426 * 180.02562 * 10 9 7 12 12 O 1.42099 * 110.54795 * 68.37107 * 11 10 9 13 13 O 1.42102 * 110.54145 * 291.62218 * 11 10 9 14 14 N 1.65603 * 104.45078 * 179.97438 * 11 10 9 15 15 C 1.46501 * 119.99898 * 64.99720 * 14 11 10 16 16 C 1.52999 * 109.46692 * 165.00001 * 15 14 11 17 17 H 1.08996 * 109.52076 * 305.06766 * 16 15 14 18 18 C 1.53581 * 109.49179 * 184.99865 * 16 15 14 19 19 C 1.51843 * 107.16826 * 181.34070 * 18 16 15 20 20 O 1.21299 * 121.73455 * 219.97996 * 19 18 16 21 21 C 1.47349 * 116.52254 * 39.99920 * 19 18 16 22 22 C 1.39621 * 120.73541 * 168.08898 * 21 19 18 23 23 C 1.37832 * 119.59234 * 179.67548 * 22 21 19 24 24 C 1.38622 * 120.19302 * 359.97438 * 23 22 21 25 25 C 1.38034 * 120.70647 * 0.13472 * 24 23 22 26 26 C 1.38833 * 120.08184 * 0.24387 * 25 24 23 27 27 O 1.35336 * 120.01259 * 179.76806 * 26 25 24 28 28 H 0.96997 * 120.00394 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.46679 * 60.00861 * 9 7 2 30 30 H 1.09006 * 109.47371 * 300.00951 * 9 7 2 31 31 H 1.08995 * 109.47436 * 59.99889 * 10 9 7 32 32 H 1.09006 * 109.47009 * 300.00391 * 10 9 7 33 33 H 0.96998 * 119.99589 * 244.99995 * 14 11 10 34 34 H 1.09001 * 109.47124 * 45.00083 * 15 14 11 35 35 H 1.08997 * 109.47040 * 284.99878 * 15 14 11 36 36 H 1.09001 * 109.91233 * 61.92230 * 18 16 15 37 37 H 1.08998 * 109.97913 * 300.79154 * 18 16 15 38 38 H 1.08001 * 120.20127 * 359.65093 * 22 21 19 39 39 H 1.08005 * 119.90160 * 179.97438 * 23 22 21 40 40 H 1.07996 * 119.64797 * 180.12169 * 24 23 22 41 41 H 1.08002 * 119.95517 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 16 5.8355 -2.6366 0.0025 12 8 6.3332 -2.1466 1.2399 13 8 6.3351 -2.1458 -1.2340 14 7 6.2487 -4.2403 0.0029 15 6 5.9131 -5.0835 -1.1471 16 6 6.7098 -6.3875 -1.0730 17 1 7.7731 -6.1608 -0.9952 18 6 6.4540 -7.2171 -2.3400 19 6 7.2398 -8.5084 -2.1965 20 8 7.8279 -9.0049 -3.1340 21 6 7.2503 -9.1271 -0.8592 22 6 7.7276 -10.4266 -0.6779 23 6 7.7328 -10.9799 0.5845 24 6 7.2674 -10.2502 1.6674 25 6 6.7912 -8.9656 1.4994 26 6 6.7693 -8.3912 0.2356 27 8 6.2977 -7.1333 0.0718 28 1 -0.4850 0.8400 -0.0004 29 1 3.8744 -0.6802 0.8913 30 1 3.8752 -0.6803 -0.8888 31 1 3.6586 -3.1502 -0.8892 32 1 3.6578 -3.1506 0.8907 33 1 6.7129 -4.6212 0.7647 34 1 6.1624 -4.5572 -2.0686 35 1 4.8466 -5.3080 -1.1341 36 1 6.7969 -6.6693 -3.2178 37 1 5.3906 -7.4378 -2.4322 38 1 8.0902 -10.9949 -1.5217 39 1 8.1006 -11.9848 0.7304 40 1 7.2773 -10.6916 2.6529 41 1 6.4311 -8.4082 2.3515 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867790051.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:49 Heat of formation + Delta-G solvation = -151.220318 kcal Electronic energy + Delta-G solvation = -26501.685971 eV Core-core repulsion = 22472.845805 eV Total energy + Delta-G solvation = -4028.840165 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.09600 -39.66912 -38.90327 -38.15238 -37.02977 -36.33874 -35.85843 -33.44650 -33.43807 -31.91271 -31.28211 -27.86055 -27.71356 -24.93393 -23.77998 -23.18353 -23.06625 -20.74837 -20.24162 -19.41601 -19.21418 -18.50922 -18.06041 -17.84709 -17.03231 -16.94065 -16.43814 -16.34568 -15.95339 -15.82738 -15.67480 -15.46910 -15.19031 -15.05488 -14.85787 -14.79854 -14.12484 -13.85478 -13.74839 -13.40169 -13.20456 -13.14858 -13.08707 -13.03866 -12.91108 -12.80946 -12.65069 -12.20167 -12.09327 -11.91568 -11.80163 -11.68333 -11.29674 -10.88209 -10.81989 -10.41085 -10.12085 -9.35937 -8.34177 -6.39534 -0.69624 -0.44324 0.33725 1.22522 1.34048 1.36337 1.45941 1.75130 1.92938 2.31676 2.71056 2.77140 2.81585 3.00241 3.23606 3.40868 3.46762 3.64269 3.82250 3.90060 3.97614 4.13481 4.16145 4.22587 4.32768 4.38932 4.44619 4.50823 4.62104 4.68936 4.79478 4.87192 4.93107 5.11280 5.12202 5.17510 5.32630 5.45177 5.50688 5.67972 6.06242 6.19500 6.23007 6.29777 6.67244 7.24919 8.81309 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.019937 B = 0.002420 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.119928 B =11567.892755 C =11718.590352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.012 3.988 3 Si 0.925 3.075 4 H -0.260 1.260 5 H -0.277 1.277 6 H -0.248 1.248 7 C -0.525 4.525 8 H 0.050 0.950 9 C -0.019 4.019 10 C -0.589 4.589 11 S 2.627 3.373 12 O -0.994 6.994 13 O -0.987 6.987 14 N -1.109 6.109 15 C 0.112 3.888 16 C 0.098 3.902 17 H 0.094 0.906 18 C -0.196 4.196 19 C 0.402 3.598 20 O -0.481 6.481 21 C -0.275 4.275 22 C -0.041 4.041 23 C -0.165 4.165 24 C -0.044 4.044 25 C -0.171 4.171 26 C 0.171 3.829 27 O -0.309 6.309 28 H 0.269 0.731 29 H 0.031 0.969 30 H 0.034 0.966 31 H 0.145 0.855 32 H 0.140 0.860 33 H 0.427 0.573 34 H 0.118 0.882 35 H 0.102 0.898 36 H 0.132 0.868 37 H 0.136 0.864 38 H 0.133 0.867 39 H 0.156 0.844 40 H 0.165 0.835 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.673 -22.519 0.926 28.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.187 4.187 3 Si 0.748 3.252 4 H -0.185 1.185 5 H -0.202 1.202 6 H -0.172 1.172 7 C -0.564 4.564 8 H 0.069 0.931 9 C -0.058 4.058 10 C -0.721 4.721 11 S 2.723 3.277 12 O -0.984 6.984 13 O -0.977 6.977 14 N -0.870 5.870 15 C -0.014 4.014 16 C 0.041 3.959 17 H 0.112 0.888 18 C -0.234 4.234 19 C 0.282 3.718 20 O -0.358 6.358 21 C -0.277 4.277 22 C -0.060 4.060 23 C -0.183 4.183 24 C -0.062 4.062 25 C -0.189 4.189 26 C 0.125 3.875 27 O -0.223 6.223 28 H 0.078 0.922 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.164 0.836 32 H 0.159 0.841 33 H 0.263 0.737 34 H 0.136 0.864 35 H 0.120 0.880 36 H 0.151 0.849 37 H 0.154 0.846 38 H 0.151 0.849 39 H 0.173 0.827 40 H 0.183 0.817 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 17.247 -21.740 0.387 27.753 hybrid contribution -0.566 0.273 0.090 0.635 sum 16.680 -21.467 0.477 27.190 Atomic orbital electron populations 1.70009 1.07924 1.28319 1.51873 1.25882 0.95612 1.03047 0.94121 0.86027 0.79934 0.79431 0.79848 1.18515 1.20249 1.17186 1.21200 0.90376 0.93812 1.51013 0.93133 1.19386 0.97080 0.91410 0.97940 1.30295 1.23014 1.05937 1.12821 1.04313 0.77682 0.72852 0.72902 1.93527 1.79365 1.79091 1.46409 1.93525 1.78397 1.79117 1.46675 1.55238 1.74733 1.28585 1.28482 1.21720 1.01395 0.88475 0.89765 1.22731 1.00299 0.89978 0.82912 0.88838 1.23121 1.04637 0.95006 1.00597 1.22776 0.76400 0.85997 0.86584 1.90548 1.37971 1.64229 1.43086 1.20685 1.13525 0.98662 0.94790 1.21357 0.93108 0.92669 0.98830 1.21452 1.03070 1.02106 0.91682 1.21639 0.91776 0.92031 1.00712 1.20982 1.05537 0.97566 0.94853 1.19343 0.90959 0.83761 0.93457 1.85754 1.67016 1.23858 1.45659 0.92214 0.95080 0.94820 0.83649 0.84137 0.73654 0.86366 0.88020 0.84942 0.84587 0.84879 0.82663 0.81719 0.83080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.14 13.96 21.45 0.30 -56.84 16 2 C 0.01 0.67 5.47 84.66 0.46 1.13 16 3 Si 0.92 43.03 27.47 68.60 1.88 44.91 16 4 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.25 -10.91 6.54 99.48 0.65 -10.26 16 7 C -0.52 -28.77 9.66 25.60 0.25 -28.53 16 8 H 0.05 2.95 7.99 -2.91 -0.02 2.93 16 9 C -0.02 -0.85 4.05 29.85 0.12 -0.73 16 10 C -0.59 -19.05 6.01 71.98 0.43 -18.62 16 11 S 2.63 76.24 5.46 -56.49 -0.31 75.93 16 12 O -0.99 -35.35 18.08 -127.65 -2.31 -37.66 16 13 O -0.99 -33.45 17.50 -127.65 -2.23 -35.69 16 14 N -1.11 -21.41 5.85 -187.49 -1.10 -22.51 16 15 C 0.11 1.65 5.80 86.38 0.50 2.15 16 16 C 0.10 1.36 2.87 30.79 0.09 1.44 16 17 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 18 C -0.20 -2.51 5.74 30.41 0.17 -2.33 16 19 C 0.40 7.61 6.98 28.45 0.20 7.81 16 20 O -0.48 -11.96 17.42 -3.09 -0.05 -12.01 16 21 C -0.27 -4.88 5.83 -20.02 -0.12 -5.00 16 22 C -0.04 -0.64 9.65 22.51 0.22 -0.42 16 23 C -0.17 -1.75 10.03 22.27 0.22 -1.53 16 24 C -0.04 -0.42 10.01 22.31 0.22 -0.19 16 25 C -0.17 -2.23 9.98 22.36 0.22 -2.01 16 26 C 0.17 2.83 6.56 22.94 0.15 2.98 16 27 O -0.31 -5.00 9.66 -86.24 -0.83 -5.84 16 28 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 29 H 0.03 1.39 7.20 -2.38 -0.02 1.37 16 30 H 0.03 1.46 7.57 -2.38 -0.02 1.44 16 31 H 0.15 4.02 8.14 -2.39 -0.02 4.00 16 32 H 0.14 4.17 8.14 -2.39 -0.02 4.15 16 33 H 0.43 7.12 8.48 -96.75 -0.82 6.30 16 34 H 0.12 1.54 7.70 -2.39 -0.02 1.52 16 35 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.13 1.33 8.14 -2.39 -0.02 1.32 16 37 H 0.14 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.13 1.99 7.82 -2.91 -0.02 1.97 16 39 H 0.16 0.82 8.06 -2.91 -0.02 0.80 16 40 H 0.17 0.53 8.06 -2.91 -0.02 0.50 16 41 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 Total: -1.00 -79.21 362.88 -1.32 -80.53 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: 0.19 Total: 13.03 kcal Atomic # 6 Polarization: -46.99 SS G_CDS: 3.15 Total: -43.84 kcal Atomic # 7 Polarization: -78.56 SS G_CDS: -0.80 Total: -79.35 kcal Atomic # 8 Polarization: -85.77 SS G_CDS: -5.43 Total: -91.20 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 1.88 Total: 44.91 kcal Atomic # 16 Polarization: 76.24 SS G_CDS: -0.31 Total: 75.93 kcal Total: -79.21 -1.32 -80.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867790051.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.693 kcal (2) G-P(sol) polarization free energy of solvation -79.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds