Wall clock time and date at job start Tue Mar 31 2020 21:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31438 * 1 3 3 Si 1.86799 * 119.99584 * 2 1 4 4 H 1.48502 * 109.47318 * 269.99650 * 3 2 1 5 5 H 1.48500 * 109.47363 * 29.99785 * 3 2 1 6 6 H 1.48504 * 109.47485 * 149.99953 * 3 2 1 7 7 C 1.38757 * 120.00474 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99754 * 0.02562 * 7 2 1 9 9 O 1.34916 * 119.99974 * 180.02562 * 7 2 1 10 10 C 1.34311 * 116.99768 * 180.02562 * 9 7 2 11 11 O 1.21210 * 120.00358 * 359.97438 * 10 9 7 12 12 C 1.50706 * 119.99815 * 179.97438 * 10 9 7 13 13 C 1.53007 * 109.46916 * 179.97438 * 12 10 9 14 14 C 1.50698 * 109.46917 * 180.02562 * 13 12 10 15 15 C 1.38288 * 119.92134 * 269.72206 * 14 13 12 16 16 C 1.38107 * 120.07582 * 180.28015 * 15 14 13 17 17 C 1.38910 * 119.92007 * 359.97438 * 16 15 14 18 18 N 1.39672 * 120.07095 * 179.97438 * 17 16 15 19 19 C 1.47066 * 126.30079 * 154.71038 * 18 17 16 20 20 C 1.54320 * 109.97168 * 150.90331 * 19 18 17 21 21 C 1.55610 * 104.18782 * 45.50408 * 20 19 18 22 22 S 1.67001 * 126.30423 * 335.01873 * 18 17 16 23 23 O 1.42104 * 105.13344 * 298.89478 * 22 18 17 24 24 O 1.42099 * 105.13081 * 68.44607 * 22 18 17 25 25 C 1.38912 * 119.85498 * 0.02562 * 17 16 15 26 26 C 1.38099 * 119.92393 * 359.97438 * 25 17 16 27 27 H 0.96993 * 120.00470 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47250 * 59.99603 * 12 10 9 29 29 H 1.09001 * 109.46807 * 299.99480 * 12 10 9 30 30 H 1.08994 * 109.47031 * 59.99915 * 13 12 10 31 31 H 1.09002 * 109.46699 * 300.00125 * 13 12 10 32 32 H 1.07997 * 119.96260 * 0.25959 * 15 14 13 33 33 H 1.07996 * 120.03861 * 179.97438 * 16 15 14 34 34 H 1.09005 * 109.35863 * 271.18137 * 19 18 17 35 35 H 1.08999 * 109.35986 * 30.82346 * 19 18 17 36 36 H 1.08996 * 110.64836 * 286.77168 * 20 19 18 37 37 H 1.09000 * 110.49722 * 164.16351 * 20 19 18 38 38 H 1.08998 * 111.16785 * 204.05745 * 21 20 19 39 39 H 1.09004 * 111.16407 * 79.79591 * 21 20 19 40 40 H 1.08001 * 120.03609 * 179.97438 * 25 17 16 41 41 H 1.07995 * 119.96581 * 179.97438 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 2.4958 2.0465 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5459 1.4404 0.7000 7 6 2.0083 -1.2016 0.0005 8 1 1.4683 -2.1369 0.0005 9 8 3.3574 -1.2015 0.0011 10 6 3.9672 -2.3982 0.0010 11 8 3.3072 -3.4148 0.0010 12 6 5.4722 -2.4769 0.0010 13 6 5.9061 -3.9442 0.0016 14 6 7.4111 -4.0230 0.0022 15 6 8.1001 -4.0652 -1.1960 16 6 9.4789 -4.1432 -1.1992 17 6 10.1736 -4.1787 0.0032 18 7 11.5681 -4.2582 0.0037 19 6 12.4660 -3.7986 1.0740 20 6 13.7531 -4.6499 1.0841 21 6 14.1668 -4.7334 -0.4137 22 16 12.5231 -4.8860 -1.2139 23 8 12.1306 -6.2469 -1.3289 24 8 12.3886 -3.9763 -2.2972 25 6 9.4784 -4.1361 1.2051 26 6 8.0996 -4.0582 1.2010 27 1 -0.4850 0.8399 -0.0004 28 1 5.8620 -1.9828 0.8909 29 1 5.8619 -1.9828 -0.8890 30 1 5.5164 -4.4387 -0.8881 31 1 5.5164 -4.4379 0.8919 32 1 7.5593 -4.0374 -2.1304 33 1 10.0164 -4.1765 -2.1353 34 1 12.7228 -2.7526 0.9059 35 1 11.9615 -3.8955 2.0353 36 1 13.5524 -5.6453 1.4802 37 1 14.5314 -4.1582 1.6677 38 1 14.7805 -5.6139 -0.6040 39 1 14.6769 -3.8244 -0.7324 40 1 10.0155 -4.1640 2.1416 41 1 7.5584 -4.0254 2.1349 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869940408.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:42 Heat of formation + Delta-G solvation = -144.893083 kcal Electronic energy + Delta-G solvation = -26134.115507 eV Core-core repulsion = 22105.549711 eV Total energy + Delta-G solvation = -4028.565796 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.22613 -40.62213 -38.37256 -38.24467 -37.50622 -37.11733 -35.33275 -34.48822 -33.28358 -31.97116 -30.04054 -27.88880 -27.19468 -25.34586 -24.23755 -22.89377 -22.18676 -21.27766 -20.26395 -20.12593 -19.06425 -18.63953 -18.10593 -17.14003 -17.06680 -16.91270 -16.67372 -16.20746 -15.98782 -15.83925 -15.49960 -15.03468 -14.99613 -14.60871 -14.50323 -14.30497 -14.21033 -14.09362 -13.86058 -13.41298 -13.33872 -13.20518 -13.15991 -13.05857 -12.48617 -12.46052 -12.38486 -12.29198 -12.21845 -12.08182 -11.84626 -11.77756 -11.55889 -11.16582 -11.02785 -10.82571 -9.95782 -8.93756 -8.53634 -6.40448 -0.97904 0.34186 0.40631 1.28226 1.31613 1.35032 1.54827 1.60520 2.28298 2.43492 2.51947 2.72975 2.92185 2.92383 3.23101 3.49829 3.77295 3.90305 3.91303 3.98981 4.04845 4.05749 4.25585 4.37526 4.43692 4.48056 4.51823 4.53624 4.67597 4.72633 4.78627 4.90844 4.97026 5.02661 5.11914 5.18337 5.27696 5.46855 5.51636 5.60239 5.71360 5.91037 6.08527 6.56712 6.84311 7.61944 8.59550 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.025455 B = 0.002038 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.727451 B =13736.910695 C =13963.823684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.012 3.988 3 Si 0.986 3.014 4 H -0.262 1.262 5 H -0.266 1.266 6 H -0.248 1.248 7 C -0.409 4.409 8 H 0.055 0.945 9 O -0.261 6.261 10 C 0.408 3.592 11 O -0.577 6.577 12 C -0.086 4.086 13 C -0.055 4.055 14 C -0.112 4.112 15 C -0.082 4.082 16 C -0.196 4.196 17 C 0.198 3.802 18 N -0.936 5.936 19 C 0.053 3.947 20 C -0.120 4.120 21 C -0.548 4.548 22 S 2.531 3.469 23 O -0.996 6.996 24 O -0.995 6.995 25 C -0.147 4.147 26 C -0.078 4.078 27 H 0.289 0.711 28 H 0.123 0.877 29 H 0.115 0.885 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.133 0.867 33 H 0.112 0.888 34 H 0.102 0.898 35 H 0.118 0.882 36 H 0.104 0.896 37 H 0.157 0.843 38 H 0.172 0.828 39 H 0.174 0.826 40 H 0.160 0.840 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 38.638 -5.923 5.849 39.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.187 4.187 3 Si 0.806 3.194 4 H -0.186 1.186 5 H -0.190 1.190 6 H -0.171 1.171 7 C -0.485 4.485 8 H 0.073 0.927 9 O -0.170 6.170 10 C 0.256 3.744 11 O -0.473 6.473 12 C -0.124 4.124 13 C -0.093 4.093 14 C -0.113 4.113 15 C -0.101 4.101 16 C -0.217 4.217 17 C 0.103 3.897 18 N -0.765 5.765 19 C -0.070 4.070 20 C -0.159 4.159 21 C -0.685 4.685 22 S 2.635 3.365 23 O -0.985 6.985 24 O -0.985 6.985 25 C -0.168 4.168 26 C -0.097 4.097 27 H 0.099 0.901 28 H 0.141 0.859 29 H 0.133 0.867 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.151 0.849 33 H 0.130 0.870 34 H 0.120 0.880 35 H 0.136 0.864 36 H 0.122 0.878 37 H 0.175 0.825 38 H 0.190 0.810 39 H 0.192 0.808 40 H 0.177 0.823 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 37.945 -6.428 4.908 38.797 hybrid contribution -0.581 0.291 -0.135 0.664 sum 37.364 -6.137 4.773 38.164 Atomic orbital electron populations 1.69709 1.07649 1.30195 1.48407 1.25630 0.96024 1.02880 0.94203 0.85037 0.79068 0.75583 0.79754 1.18614 1.19014 1.17100 1.20315 0.77992 0.95669 1.54499 0.92679 1.83544 1.21832 1.33179 1.78495 1.24610 0.93342 0.81128 0.75347 1.90582 1.68845 1.37358 1.50555 1.21321 0.84204 0.99729 1.07123 1.20206 0.91015 0.94106 1.03951 1.19719 0.94506 1.03398 0.93700 1.20964 0.92837 0.97548 0.98702 1.21026 0.95598 1.08322 0.96800 1.17229 0.80683 0.97531 0.94298 1.54934 1.10616 1.74362 1.36540 1.22789 0.89794 1.00602 0.93834 1.22920 0.96759 1.03632 0.92603 1.30682 1.14423 1.15391 1.07980 1.07570 0.80974 0.73622 0.74383 1.93587 1.82347 1.36680 1.85931 1.93583 1.86588 1.64812 1.53473 1.21079 0.93978 1.04793 0.96997 1.21221 0.93766 0.96609 0.98107 0.90136 0.85943 0.86682 0.91432 0.90458 0.84924 0.86989 0.87977 0.86379 0.87767 0.82546 0.81041 0.80835 0.82281 0.83298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.60 13.96 21.63 0.30 -56.30 16 2 C 0.01 0.71 5.49 84.88 0.47 1.18 16 3 Si 0.99 44.18 28.62 68.60 1.96 46.14 16 4 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 5 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 6 H -0.25 -10.52 7.11 99.48 0.71 -9.81 16 7 C -0.41 -25.67 10.10 67.94 0.69 -24.98 16 8 H 0.06 3.94 7.09 -2.91 -0.02 3.92 16 9 O -0.26 -14.10 8.58 14.91 0.13 -13.97 16 10 C 0.41 19.38 7.91 71.24 0.56 19.94 16 11 O -0.58 -31.82 15.22 20.77 0.32 -31.51 16 12 C -0.09 -2.73 5.79 29.85 0.17 -2.56 16 13 C -0.06 -1.59 4.63 29.85 0.14 -1.46 16 14 C -0.11 -2.74 5.14 -19.84 -0.10 -2.84 16 15 C -0.08 -2.09 9.69 22.25 0.22 -1.88 16 16 C -0.20 -5.11 9.48 22.40 0.21 -4.89 16 17 C 0.20 4.23 6.48 38.21 0.25 4.48 16 18 N -0.94 -14.27 3.47 -335.97 -1.17 -15.44 16 19 C 0.05 0.20 6.56 86.72 0.57 0.77 16 20 C -0.12 0.23 6.81 31.94 0.22 0.45 16 21 C -0.55 -0.54 7.51 72.88 0.55 0.01 16 22 S 2.53 41.42 5.45 -56.49 -0.31 41.11 16 23 O -1.00 -24.97 18.14 -127.76 -2.32 -27.29 16 24 O -0.99 -24.40 16.95 -127.76 -2.17 -26.56 16 25 C -0.15 -2.55 9.54 22.40 0.21 -2.34 16 26 C -0.08 -1.56 9.69 22.25 0.22 -1.34 16 27 H 0.29 15.99 8.31 -92.71 -0.77 15.22 16 28 H 0.12 3.22 8.14 -2.39 -0.02 3.20 16 29 H 0.12 3.21 8.14 -2.39 -0.02 3.19 16 30 H 0.07 2.11 8.04 -2.39 -0.02 2.10 16 31 H 0.08 2.28 8.04 -2.39 -0.02 2.26 16 32 H 0.13 3.16 8.06 -2.91 -0.02 3.14 16 33 H 0.11 3.13 6.52 -2.91 -0.02 3.11 16 34 H 0.10 0.11 8.14 -2.38 -0.02 0.09 16 35 H 0.12 0.10 6.65 -2.39 -0.02 0.09 16 36 H 0.10 -0.22 8.14 -2.39 -0.02 -0.24 16 37 H 0.16 -1.34 8.14 -2.39 -0.02 -1.36 16 38 H 0.17 -0.53 8.14 -2.39 -0.02 -0.55 16 39 H 0.17 -0.61 8.14 -2.39 -0.02 -0.63 16 40 H 0.16 1.58 6.70 -2.91 -0.02 1.56 16 41 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -94.64 360.97 2.17 -92.47 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: 1.05 Total: 6.81 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: 4.36 Total: -15.47 kcal Atomic # 7 Polarization: -70.87 SS G_CDS: -0.86 Total: -71.73 kcal Atomic # 8 Polarization: -95.29 SS G_CDS: -4.04 Total: -99.33 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.96 Total: 46.14 kcal Atomic # 16 Polarization: 41.42 SS G_CDS: -0.31 Total: 41.11 kcal Total: -94.64 2.17 -92.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869940408.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.424 kcal (2) G-P(sol) polarization free energy of solvation -94.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds