Wall clock time and date at job start Tue Mar 31 2020 22:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30623 * 1 3 3 Si 1.86801 * 119.99773 * 2 1 4 4 H 1.48502 * 109.46675 * 239.99689 * 3 2 1 5 5 H 1.48497 * 109.47334 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46746 * 120.00097 * 3 2 1 7 7 C 1.40339 * 119.99950 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00099 * 169.97225 * 7 2 1 9 9 C 1.40504 * 119.99931 * 349.96318 * 7 2 1 10 10 C 1.39677 * 123.36653 * 334.80248 * 9 7 2 11 11 C 1.32874 * 115.27419 * 180.27806 * 10 9 7 12 12 S 1.75639 * 110.87239 * 359.75210 * 11 10 9 13 13 C 1.39708 * 123.35892 * 154.62665 * 9 7 2 14 14 C 1.41753 * 125.45378 * 0.02562 * 13 9 7 15 15 O 1.21685 * 120.00241 * 359.70848 * 14 13 9 16 16 O 1.35003 * 119.99768 * 179.71541 * 14 13 9 17 17 C 1.42897 * 117.00115 * 179.97438 * 16 14 13 18 18 C 1.50692 * 109.47416 * 179.97438 * 17 16 14 19 19 O 1.21282 * 119.99925 * 0.02562 * 18 17 16 20 20 N 1.34775 * 120.00267 * 180.02562 * 18 17 16 21 21 C 1.46507 * 120.00230 * 180.02562 * 20 18 17 22 22 C 1.52995 * 109.47108 * 179.97438 * 21 20 18 23 23 H 1.09005 * 110.35135 * 60.69039 * 22 21 20 24 24 C 1.54944 * 110.31157 * 182.83097 * 22 21 20 25 25 C 1.55295 * 100.94556 * 155.36039 * 24 22 21 26 26 C 1.54383 * 102.25458 * 325.87178 * 25 24 22 27 27 O 1.43237 * 107.58843 * 21.35389 * 26 25 24 28 28 H 0.96994 * 120.00418 * 359.97438 * 1 2 3 29 29 H 1.07994 * 122.35900 * 0.02825 * 10 9 7 30 30 H 1.08002 * 124.56070 * 179.76270 * 11 10 9 31 31 H 1.09003 * 109.46964 * 59.99723 * 17 16 14 32 32 H 1.09006 * 109.46795 * 300.00343 * 17 16 14 33 33 H 0.97004 * 120.00093 * 359.97438 * 20 18 17 34 34 H 1.09005 * 109.46957 * 59.99912 * 21 20 18 35 35 H 1.09002 * 109.46686 * 299.99919 * 21 20 18 36 36 H 1.09009 * 111.12173 * 37.44185 * 24 22 21 37 37 H 1.09004 * 111.16385 * 273.30066 * 24 22 21 38 38 H 1.09000 * 110.85294 * 207.67449 * 25 24 22 39 39 H 1.09004 * 110.84684 * 84.06048 * 25 24 22 40 40 H 1.08994 * 109.82607 * 261.84186 * 26 25 24 41 41 H 1.09000 * 109.82943 * 140.86922 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 3.0939 1.6963 -1.2125 5 1 1.2752 2.7465 -0.0006 6 1 3.0939 1.6964 1.2125 7 6 2.0079 -1.2154 -0.0005 8 1 3.0756 -1.2225 -0.1634 9 6 1.3215 -2.4229 0.2110 10 6 0.1140 -2.5084 0.9079 11 6 -0.3923 -3.7319 1.0177 12 16 0.6393 -4.9098 0.2219 13 6 1.7768 -3.6577 -0.2579 14 6 2.9682 -3.8683 -0.9966 15 8 3.6859 -2.9259 -1.2752 16 8 3.3064 -5.1142 -1.3912 17 6 4.5201 -5.2529 -2.1327 18 6 4.7317 -6.7031 -2.4833 19 8 3.9226 -7.5359 -2.1331 20 7 5.8202 -7.0746 -3.1859 21 6 6.0257 -8.4845 -3.5272 22 6 7.3252 -8.6329 -4.3210 23 1 8.1735 -8.2944 -3.7260 24 6 7.5258 -10.1071 -4.7536 25 6 8.4365 -9.9277 -5.9986 26 6 7.9202 -8.6000 -6.5937 27 8 7.2480 -7.8891 -5.5475 28 1 -0.4850 0.8400 0.0004 29 1 -0.3716 -1.6416 1.3312 30 1 -1.3141 -3.9700 1.5276 31 1 5.3566 -4.8993 -1.5298 32 1 4.4565 -4.6630 -3.0472 33 1 6.4671 -6.4085 -3.4663 34 1 5.1894 -8.8378 -4.1306 35 1 6.0887 -9.0742 -2.6127 36 1 6.5766 -10.5696 -5.0246 37 1 8.0314 -10.6800 -3.9763 38 1 8.2977 -10.7483 -6.7024 39 1 9.4826 -9.8402 -5.7047 40 1 7.2247 -8.8053 -7.4073 41 1 8.7587 -8.0093 -6.9626 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870044852.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:50 Heat of formation + Delta-G solvation = -169.129898 kcal Electronic energy + Delta-G solvation = -25882.606923 eV Core-core repulsion = 21852.990140 eV Total energy + Delta-G solvation = -4029.616783 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.45190 -40.71725 -40.02840 -38.58354 -36.83336 -35.91366 -35.10098 -33.16128 -31.89926 -31.11208 -29.81642 -28.27758 -26.17340 -24.50640 -22.77661 -22.49843 -22.25753 -21.57764 -20.69610 -19.62934 -18.53806 -18.10159 -17.97901 -17.57178 -17.33478 -17.13384 -16.64180 -16.56877 -16.11519 -15.73278 -15.52645 -15.25084 -14.58224 -14.42780 -14.26356 -14.16527 -13.79887 -13.66991 -13.47225 -13.44107 -13.17934 -12.98322 -12.80809 -12.68924 -12.35172 -12.21868 -12.19286 -12.04011 -11.72130 -11.59358 -11.45932 -11.17091 -11.02228 -10.81070 -10.52721 -10.26059 -9.45517 -9.12396 -8.97973 -6.63707 0.04853 1.33787 1.35659 1.38088 1.38219 1.48564 1.50967 1.76861 1.87675 2.14317 2.29952 2.57041 2.82446 3.20072 3.49752 3.61917 3.73672 3.97597 4.06740 4.11405 4.13201 4.18811 4.38655 4.39152 4.55981 4.62256 4.83029 4.84014 4.91338 4.93722 4.97937 5.02151 5.11978 5.23064 5.26674 5.32828 5.55163 5.61401 5.80214 6.02757 6.28097 6.34249 6.46291 6.61228 7.04356 7.35206 7.94274 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.017985 B = 0.002250 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.479141 B =12441.925633 C =13771.346956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.032 3.968 3 Si 0.998 3.002 4 H -0.266 1.266 5 H -0.249 1.249 6 H -0.252 1.252 7 C -0.386 4.386 8 H 0.094 0.906 9 C 0.117 3.883 10 C -0.133 4.133 11 C -0.178 4.178 12 S 0.003 5.997 13 C -0.455 4.455 14 C 0.527 3.473 15 O -0.573 6.573 16 O -0.360 6.360 17 C 0.048 3.952 18 C 0.522 3.478 19 O -0.564 6.564 20 N -0.706 5.706 21 C 0.121 3.879 22 C 0.071 3.929 23 H 0.095 0.905 24 C -0.147 4.147 25 C -0.148 4.148 26 C 0.041 3.959 27 O -0.404 6.404 28 H 0.308 0.692 29 H 0.148 0.852 30 H 0.182 0.818 31 H 0.105 0.895 32 H 0.099 0.901 33 H 0.418 0.582 34 H 0.060 0.940 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.106 0.894 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.068 0.932 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.752 -11.498 -7.906 19.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.191 4.191 3 Si 0.816 3.184 4 H -0.190 1.190 5 H -0.172 1.172 6 H -0.176 1.176 7 C -0.416 4.416 8 H 0.112 0.888 9 C 0.106 3.894 10 C -0.165 4.165 11 C -0.313 4.313 12 S 0.259 5.741 13 C -0.571 4.571 14 C 0.385 3.615 15 O -0.472 6.472 16 O -0.278 6.278 17 C -0.030 4.030 18 C 0.308 3.692 19 O -0.442 6.442 20 N -0.360 5.360 21 C -0.002 4.002 22 C 0.013 3.987 23 H 0.112 0.888 24 C -0.185 4.185 25 C -0.185 4.185 26 C -0.035 4.035 27 O -0.324 6.324 28 H 0.120 0.880 29 H 0.166 0.834 30 H 0.199 0.801 31 H 0.123 0.877 32 H 0.117 0.883 33 H 0.255 0.745 34 H 0.078 0.922 35 H 0.105 0.895 36 H 0.098 0.902 37 H 0.124 0.876 38 H 0.115 0.885 39 H 0.108 0.892 40 H 0.087 0.913 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 12.982 -13.117 -7.988 20.110 hybrid contribution 0.588 2.197 -0.163 2.281 sum 13.571 -10.919 -8.151 19.231 Atomic orbital electron populations 1.69626 1.09063 1.32883 1.28090 1.27248 0.95914 1.05247 0.90699 0.85005 0.78923 0.74041 0.80446 1.19038 1.17199 1.17612 1.20285 0.97384 0.90478 1.33437 0.88824 1.17354 0.91547 0.91836 0.88686 1.20558 0.96710 0.97628 1.01644 1.25727 1.04182 0.96168 1.05179 1.83283 1.18477 1.11680 1.60631 1.21360 1.06979 0.97902 1.30813 1.18386 0.85381 0.79446 0.78267 1.90662 1.54266 1.42485 1.59814 1.86237 1.40976 1.32693 1.67908 1.22234 0.87978 0.94454 0.98364 1.20191 0.81582 0.89516 0.77919 1.90709 1.45274 1.53900 1.54317 1.45590 1.24145 1.10849 1.55415 1.21690 0.97675 0.81398 0.99406 1.23312 0.95984 0.92934 0.86431 0.88754 1.23277 1.01482 0.94645 0.99066 1.23120 1.00560 0.97501 0.97335 1.23315 0.96740 0.93152 0.90321 1.88434 1.78018 1.46781 1.19184 0.87995 0.83443 0.80057 0.87674 0.88292 0.74500 0.92171 0.89467 0.90153 0.87557 0.88459 0.89152 0.91328 0.90491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -35.69 10.87 21.89 0.24 -35.45 16 2 C 0.03 1.47 5.37 85.38 0.46 1.93 16 3 Si 1.00 35.67 29.57 68.60 2.03 37.69 16 4 H -0.27 -9.86 7.11 99.48 0.71 -9.15 16 5 H -0.25 -7.83 7.11 99.48 0.71 -7.13 16 6 H -0.25 -8.77 7.11 99.48 0.71 -8.07 16 7 C -0.39 -20.89 8.40 23.33 0.20 -20.69 16 8 H 0.09 5.32 6.07 -2.91 -0.02 5.30 16 9 C 0.12 6.43 5.53 -22.02 -0.12 6.31 16 10 C -0.13 -6.53 8.81 21.44 0.19 -6.34 16 11 C -0.18 -7.77 11.11 66.64 0.74 -7.03 16 12 S 0.00 0.15 23.02 -56.49 -1.30 -1.15 16 13 C -0.45 -25.17 6.36 23.49 0.15 -25.02 16 14 C 0.53 28.74 7.73 68.69 0.53 29.27 16 15 O -0.57 -32.21 14.11 19.23 0.27 -31.94 16 16 O -0.36 -17.73 9.40 -52.74 -0.50 -18.22 16 17 C 0.05 1.78 5.86 71.23 0.42 2.20 16 18 C 0.52 17.99 7.91 87.65 0.69 18.68 16 19 O -0.56 -24.41 16.50 16.00 0.26 -24.15 16 20 N -0.71 -17.11 5.48 -463.06 -2.54 -19.65 16 21 C 0.12 2.47 5.40 86.38 0.47 2.93 16 22 C 0.07 1.01 3.51 31.26 0.11 1.12 16 23 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 24 C -0.15 -1.39 6.57 32.05 0.21 -1.18 16 25 C -0.15 -1.11 7.02 31.85 0.22 -0.89 16 26 C 0.04 0.50 7.79 72.45 0.56 1.06 16 27 O -0.40 -7.39 10.89 -148.98 -1.62 -9.01 16 28 H 0.31 12.31 8.29 -92.71 -0.77 11.54 16 29 H 0.15 6.99 6.37 -2.91 -0.02 6.98 16 30 H 0.18 6.25 8.06 -2.91 -0.02 6.23 16 31 H 0.11 3.51 8.13 -2.39 -0.02 3.49 16 32 H 0.10 3.45 8.13 -2.38 -0.02 3.43 16 33 H 0.42 8.04 8.41 -92.71 -0.78 7.26 16 34 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 35 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.08 0.84 8.06 -2.38 -0.02 0.82 16 37 H 0.11 0.64 8.14 -2.38 -0.02 0.62 16 38 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.09 0.48 8.14 -2.38 -0.02 0.46 16 40 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -73.48 365.18 1.97 -71.51 By element: Atomic # 1 Polarization: 27.71 SS G_CDS: 0.30 Total: 28.00 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: 4.83 Total: 2.37 kcal Atomic # 7 Polarization: -52.80 SS G_CDS: -2.30 Total: -55.10 kcal Atomic # 8 Polarization: -81.74 SS G_CDS: -1.58 Total: -83.32 kcal Atomic # 14 Polarization: 35.67 SS G_CDS: 2.03 Total: 37.69 kcal Atomic # 16 Polarization: 0.15 SS G_CDS: -1.30 Total: -1.15 kcal Total: -73.48 1.97 -71.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870044852.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.621 kcal (2) G-P(sol) polarization free energy of solvation -73.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds