Wall clock time and date at job start Tue Mar 31 2020 22:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30617 * 1 3 3 Si 1.86800 * 120.00233 * 2 1 4 4 H 1.48498 * 109.47031 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47075 * 299.99871 * 3 2 1 6 6 H 1.48499 * 109.47237 * 59.99454 * 3 2 1 7 7 C 1.40338 * 119.99632 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99591 * 190.07111 * 7 2 1 9 9 C 1.40509 * 120.00467 * 10.07714 * 7 2 1 10 10 C 1.39668 * 123.35694 * 25.25990 * 9 7 2 11 11 C 1.32879 * 115.27231 * 180.02562 * 10 9 7 12 12 S 1.75647 * 110.86933 * 359.73486 * 11 10 9 13 13 C 1.39695 * 123.35942 * 205.29422 * 9 7 2 14 14 C 1.41754 * 125.45993 * 359.97030 * 13 9 7 15 15 O 1.21686 * 119.99876 * 0.02562 * 14 13 9 16 16 O 1.35006 * 119.99790 * 180.02562 * 14 13 9 17 17 C 1.42899 * 116.99575 * 179.97438 * 16 14 13 18 18 C 1.50706 * 109.46902 * 180.02562 * 17 16 14 19 19 O 1.21281 * 119.99890 * 0.02562 * 18 17 16 20 20 N 1.34770 * 119.99930 * 179.73036 * 18 17 16 21 21 C 1.46505 * 120.00076 * 180.02562 * 20 18 17 22 22 C 1.52998 * 109.47028 * 179.97438 * 21 20 18 23 23 H 1.09002 * 109.82499 * 305.69808 * 22 21 20 24 24 C 1.54381 * 109.82740 * 184.81374 * 22 21 20 25 25 C 1.55447 * 102.18514 * 219.18283 * 24 22 21 26 26 C 1.54949 * 100.99201 * 34.04110 * 25 24 22 27 27 O 1.43242 * 109.83020 * 66.58891 * 22 21 20 28 28 H 0.97001 * 120.00181 * 0.02562 * 1 2 3 29 29 H 1.07999 * 122.36450 * 0.04923 * 10 9 7 30 30 H 1.08000 * 124.55952 * 180.02562 * 11 10 9 31 31 H 1.09006 * 109.46796 * 60.00694 * 17 16 14 32 32 H 1.09000 * 109.47582 * 300.00489 * 17 16 14 33 33 H 0.96998 * 120.00115 * 359.97438 * 20 18 17 34 34 H 1.09002 * 109.46499 * 299.99945 * 21 20 18 35 35 H 1.09003 * 109.46746 * 59.99816 * 21 20 18 36 36 H 1.09005 * 110.85103 * 337.31936 * 24 22 21 37 37 H 1.08999 * 110.84718 * 100.94297 * 24 22 21 38 38 H 1.09005 * 111.05875 * 276.12222 * 25 24 22 39 39 H 1.09001 * 111.18818 * 152.00873 * 25 24 22 40 40 H 1.09003 * 110.30819 * 204.69151 * 26 25 24 41 41 H 1.08993 * 110.39060 * 82.56293 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6177 0.0000 4 1 3.7002 1.3463 0.0006 5 1 1.8815 2.3964 -1.2125 6 1 1.8814 2.3965 1.2124 7 6 2.0078 -1.2154 0.0005 8 1 3.0753 -1.2225 0.1641 9 6 1.3215 -2.4230 -0.2118 10 6 0.1152 -2.5081 -0.9106 11 6 -0.3945 -3.7308 -1.0156 12 16 0.6397 -4.9099 -0.2248 13 6 1.7773 -3.6580 0.2555 14 6 2.9692 -3.8691 0.9933 15 8 3.6894 -2.9276 1.2682 16 8 3.3052 -5.1148 1.3909 17 6 4.5201 -5.2541 2.1302 18 6 4.7289 -6.7039 2.4847 19 8 3.9175 -7.5359 2.1379 20 7 5.8204 -7.0767 3.1819 21 6 6.0237 -8.4862 3.5260 22 6 7.3282 -8.6363 4.3113 23 1 8.1514 -8.1968 3.7481 24 6 7.6123 -10.1309 4.5738 25 6 8.1719 -10.1088 6.0238 26 6 7.3502 -8.9486 6.6400 27 8 7.2076 -7.9871 5.5824 28 1 -0.4850 0.8400 -0.0004 29 1 -0.3690 -1.6415 -1.3359 30 1 -1.3177 -3.9681 -1.5233 31 1 4.4598 -4.6616 3.0431 32 1 5.3562 -4.9045 1.5245 33 1 6.4717 -6.4119 3.4552 34 1 5.1900 -8.8352 4.1354 35 1 6.0795 -9.0787 2.6128 36 1 6.6937 -10.7155 4.5216 37 1 8.3566 -10.5128 3.8750 38 1 9.2379 -9.8811 6.0288 39 1 7.9711 -11.0487 6.5380 40 1 7.8872 -8.5095 7.4808 41 1 6.3717 -9.3052 6.9615 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870044853.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:54 Heat of formation + Delta-G solvation = -148.161792 kcal Electronic energy + Delta-G solvation = -25902.927575 eV Core-core repulsion = 21874.220037 eV Total energy + Delta-G solvation = -4028.707538 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.19275 -39.53701 -38.62310 -36.72794 -35.01628 -34.65113 -33.24008 -32.60178 -30.86466 -29.35431 -28.36109 -26.58646 -25.24334 -22.70721 -22.22957 -21.56415 -20.70378 -20.23984 -18.81689 -17.87736 -17.44977 -16.97129 -16.45495 -16.11020 -16.00570 -15.80074 -15.47798 -14.94878 -14.80359 -14.46321 -14.04385 -13.80088 -13.75276 -13.23290 -12.80025 -12.73469 -12.54226 -12.23133 -12.19493 -11.86897 -11.83312 -11.63169 -11.59416 -11.50683 -11.29748 -11.17377 -11.05565 -10.44317 -10.27963 -9.93557 -9.81562 -9.70990 -9.62853 -9.24372 -9.11146 -8.84930 -7.54228 -7.20831 -7.16590 -4.67201 1.93171 2.75552 2.82670 2.88275 2.93121 3.02939 3.20042 3.41671 3.63003 3.72706 3.79559 4.00260 4.15300 4.20789 4.30302 4.41898 4.68787 4.76393 4.87476 5.00727 5.14862 5.22195 5.25294 5.28165 5.33804 5.47581 5.54202 5.56829 5.59645 5.76183 6.08954 6.33294 6.61475 6.65777 6.75780 7.03714 7.18197 7.41543 7.49808 7.53809 7.73799 8.23370 8.31717 8.43839 8.55546 9.29621 9.71788 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.018286 B = 0.002246 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.878370 B =12466.011649 C =13713.417459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.764 5.764 2 C 0.064 3.936 3 Si 0.928 3.072 4 H -0.252 1.252 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.362 4.362 8 H 0.114 0.886 9 C 0.142 3.858 10 C -0.112 4.112 11 C -0.201 4.201 12 S -0.002 6.002 13 C -0.410 4.410 14 C 0.533 3.467 15 O -0.550 6.550 16 O -0.346 6.346 17 C 0.057 3.943 18 C 0.516 3.484 19 O -0.517 6.517 20 N -0.728 5.728 21 C 0.113 3.887 22 C 0.068 3.932 23 H 0.089 0.911 24 C -0.148 4.148 25 C -0.156 4.156 26 C 0.049 3.951 27 O -0.374 6.374 28 H 0.291 0.709 29 H 0.144 0.856 30 H 0.140 0.860 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.404 0.596 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.603 -12.077 7.865 19.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.387 5.387 2 C -0.160 4.160 3 Si 0.751 3.249 4 H -0.175 1.175 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.393 4.393 8 H 0.132 0.868 9 C 0.131 3.869 10 C -0.144 4.144 11 C -0.336 4.336 12 S 0.254 5.746 13 C -0.527 4.527 14 C 0.390 3.610 15 O -0.447 6.447 16 O -0.265 6.265 17 C -0.022 4.022 18 C 0.302 3.698 19 O -0.391 6.391 20 N -0.383 5.383 21 C -0.011 4.011 22 C 0.010 3.990 23 H 0.107 0.893 24 C -0.186 4.186 25 C -0.194 4.194 26 C -0.028 4.028 27 O -0.294 6.294 28 H 0.102 0.898 29 H 0.162 0.838 30 H 0.158 0.842 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.239 0.761 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.098 0.902 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.878 -13.653 7.918 19.753 hybrid contribution 0.654 2.282 0.082 2.376 sum 12.531 -11.371 8.001 18.718 Atomic orbital electron populations 1.69679 1.08193 1.30733 1.30122 1.26469 0.95028 1.02858 0.91604 0.85902 0.81387 0.78773 0.78886 1.17457 1.19268 1.19311 1.20240 0.97933 0.88893 1.32197 0.86845 1.16922 0.90311 0.91488 0.88152 1.20561 0.96755 0.96615 1.00511 1.25319 1.03680 0.97514 1.07057 1.83457 1.18517 1.11922 1.60666 1.20967 1.05627 0.96646 1.29431 1.18325 0.85399 0.79018 0.78221 1.90712 1.53392 1.41827 1.58798 1.86298 1.38626 1.34082 1.67448 1.21878 0.89259 0.92940 0.98115 1.20426 0.81041 0.90646 0.77718 1.90728 1.43326 1.53168 1.51899 1.45720 1.25214 1.09449 1.57948 1.21739 0.97229 0.82898 0.99193 1.23028 0.96850 0.93217 0.85914 0.89307 1.23134 1.02582 0.95521 0.97386 1.23297 1.00787 0.99769 0.95523 1.23408 0.99309 0.89116 0.90929 1.88483 1.93915 1.33158 1.13829 0.89760 0.83843 0.84202 0.89347 0.89444 0.76125 0.91006 0.90398 0.89822 0.89462 0.90239 0.89704 0.89587 0.92024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.00 10.87 55.57 0.60 -17.39 16 2 C 0.06 1.51 5.37 -17.28 -0.09 1.42 16 3 Si 0.93 17.82 29.57 -169.99 -5.03 12.79 16 4 H -0.25 -4.94 7.11 56.52 0.40 -4.54 16 5 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 6 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 7 C -0.36 -9.58 8.41 -37.94 -0.32 -9.90 16 8 H 0.11 3.11 6.06 -52.48 -0.32 2.79 16 9 C 0.14 3.83 5.53 -107.96 -0.60 3.23 16 10 C -0.11 -2.74 8.81 -40.90 -0.36 -3.10 16 11 C -0.20 -4.50 11.11 28.88 0.32 -4.18 16 12 S 0.00 -0.06 23.02 -107.50 -2.47 -2.53 16 13 C -0.41 -11.03 6.36 -37.70 -0.24 -11.27 16 14 C 0.53 14.02 7.73 32.07 0.25 14.26 16 15 O -0.55 -14.89 14.10 -19.41 -0.27 -15.16 16 16 O -0.35 -8.24 9.41 -48.10 -0.45 -8.69 16 17 C 0.06 1.04 5.86 36.01 0.21 1.25 16 18 C 0.52 8.77 7.91 -10.99 -0.09 8.68 16 19 O -0.52 -10.93 16.50 -14.35 -0.24 -11.17 16 20 N -0.73 -8.96 5.53 -60.29 -0.33 -9.29 16 21 C 0.11 1.19 5.21 -4.04 -0.02 1.17 16 22 C 0.07 0.53 3.56 -26.01 -0.09 0.44 16 23 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 24 C -0.15 -0.83 6.56 -24.71 -0.16 -0.99 16 25 C -0.16 -0.78 7.16 -24.40 -0.17 -0.95 16 26 C 0.05 0.33 7.78 38.19 0.30 0.63 16 27 O -0.37 -3.59 10.99 -35.23 -0.39 -3.98 16 28 H 0.29 6.06 8.29 -40.82 -0.34 5.72 16 29 H 0.14 3.44 6.38 -52.49 -0.33 3.10 16 30 H 0.14 2.62 8.06 -52.49 -0.42 2.20 16 31 H 0.09 1.51 8.13 -51.93 -0.42 1.09 16 32 H 0.09 1.44 8.13 -51.93 -0.42 1.02 16 33 H 0.40 4.02 8.47 -40.82 -0.35 3.67 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.08 0.46 7.85 -51.93 -0.41 0.06 16 37 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 40 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 365.14 15.07 5.50 5.50 Total: -1.00 -33.10 365.14 -9.34 -42.43 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -5.19 Total: 6.80 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: -1.07 Total: 0.69 kcal Atomic # 7 Polarization: -26.95 SS G_CDS: 0.27 Total: -26.68 kcal Atomic # 8 Polarization: -37.65 SS G_CDS: -1.35 Total: -39.00 kcal Atomic # 14 Polarization: 17.82 SS G_CDS: -5.03 Total: 12.79 kcal Atomic # 16 Polarization: -0.06 SS G_CDS: -2.47 Total: -2.53 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.10 -9.34 -42.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870044853.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.728 kcal (2) G-P(sol) polarization free energy of solvation -33.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds