Wall clock time and date at job start Tue Mar 31 2020 22:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30617 * 1 3 3 Si 1.86800 * 120.00233 * 2 1 4 4 H 1.48498 * 109.47031 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47075 * 299.99871 * 3 2 1 6 6 H 1.48499 * 109.47237 * 59.99454 * 3 2 1 7 7 C 1.40338 * 119.99632 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99591 * 190.07111 * 7 2 1 9 9 C 1.40509 * 120.00467 * 10.07714 * 7 2 1 10 10 C 1.39668 * 123.35694 * 25.25990 * 9 7 2 11 11 C 1.32879 * 115.27231 * 180.02562 * 10 9 7 12 12 S 1.75647 * 110.86933 * 359.73486 * 11 10 9 13 13 C 1.39695 * 123.35942 * 205.29422 * 9 7 2 14 14 C 1.41754 * 125.45993 * 359.97030 * 13 9 7 15 15 O 1.21686 * 119.99876 * 0.02562 * 14 13 9 16 16 O 1.35006 * 119.99790 * 180.02562 * 14 13 9 17 17 C 1.42899 * 116.99575 * 179.97438 * 16 14 13 18 18 C 1.50706 * 109.46902 * 180.02562 * 17 16 14 19 19 O 1.21281 * 119.99890 * 0.02562 * 18 17 16 20 20 N 1.34770 * 119.99930 * 179.73036 * 18 17 16 21 21 C 1.46505 * 120.00076 * 180.02562 * 20 18 17 22 22 C 1.52998 * 109.47028 * 179.97438 * 21 20 18 23 23 H 1.09002 * 109.82499 * 305.69808 * 22 21 20 24 24 C 1.54381 * 109.82740 * 184.81374 * 22 21 20 25 25 C 1.55447 * 102.18514 * 219.18283 * 24 22 21 26 26 C 1.54949 * 100.99201 * 34.04110 * 25 24 22 27 27 O 1.43242 * 109.83020 * 66.58891 * 22 21 20 28 28 H 0.97001 * 120.00181 * 0.02562 * 1 2 3 29 29 H 1.07999 * 122.36450 * 0.04923 * 10 9 7 30 30 H 1.08000 * 124.55952 * 180.02562 * 11 10 9 31 31 H 1.09006 * 109.46796 * 60.00694 * 17 16 14 32 32 H 1.09000 * 109.47582 * 300.00489 * 17 16 14 33 33 H 0.96998 * 120.00115 * 359.97438 * 20 18 17 34 34 H 1.09002 * 109.46499 * 299.99945 * 21 20 18 35 35 H 1.09003 * 109.46746 * 59.99816 * 21 20 18 36 36 H 1.09005 * 110.85103 * 337.31936 * 24 22 21 37 37 H 1.08999 * 110.84718 * 100.94297 * 24 22 21 38 38 H 1.09005 * 111.05875 * 276.12222 * 25 24 22 39 39 H 1.09001 * 111.18818 * 152.00873 * 25 24 22 40 40 H 1.09003 * 110.30819 * 204.69151 * 26 25 24 41 41 H 1.08993 * 110.39060 * 82.56293 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6177 0.0000 4 1 3.7002 1.3463 0.0006 5 1 1.8815 2.3964 -1.2125 6 1 1.8814 2.3965 1.2124 7 6 2.0078 -1.2154 0.0005 8 1 3.0753 -1.2225 0.1641 9 6 1.3215 -2.4230 -0.2118 10 6 0.1152 -2.5081 -0.9106 11 6 -0.3945 -3.7308 -1.0156 12 16 0.6397 -4.9099 -0.2248 13 6 1.7773 -3.6580 0.2555 14 6 2.9692 -3.8691 0.9933 15 8 3.6894 -2.9276 1.2682 16 8 3.3052 -5.1148 1.3909 17 6 4.5201 -5.2541 2.1302 18 6 4.7289 -6.7039 2.4847 19 8 3.9175 -7.5359 2.1379 20 7 5.8204 -7.0767 3.1819 21 6 6.0237 -8.4862 3.5260 22 6 7.3282 -8.6363 4.3113 23 1 8.1514 -8.1968 3.7481 24 6 7.6123 -10.1309 4.5738 25 6 8.1719 -10.1088 6.0238 26 6 7.3502 -8.9486 6.6400 27 8 7.2076 -7.9871 5.5824 28 1 -0.4850 0.8400 -0.0004 29 1 -0.3690 -1.6415 -1.3359 30 1 -1.3177 -3.9681 -1.5233 31 1 4.4598 -4.6616 3.0431 32 1 5.3562 -4.9045 1.5245 33 1 6.4717 -6.4119 3.4552 34 1 5.1900 -8.8352 4.1354 35 1 6.0795 -9.0787 2.6128 36 1 6.6937 -10.7155 4.5216 37 1 8.3566 -10.5128 3.8750 38 1 9.2379 -9.8811 6.0288 39 1 7.9711 -11.0487 6.5380 40 1 7.8872 -8.5095 7.4808 41 1 6.3717 -9.3052 6.9615 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870044853.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:53 Heat of formation + Delta-G solvation = -169.521686 kcal Electronic energy + Delta-G solvation = -25903.853809 eV Core-core repulsion = 21874.220037 eV Total energy + Delta-G solvation = -4029.633772 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.46122 -40.74500 -40.02782 -38.58674 -36.83541 -35.89364 -35.10487 -33.15387 -31.86141 -31.10676 -29.81601 -28.28603 -26.21149 -24.51286 -22.84824 -22.46072 -22.22769 -21.56508 -20.69955 -19.63201 -18.52812 -18.09424 -18.01125 -17.57865 -17.34679 -17.12264 -16.77798 -16.58741 -16.05298 -15.73174 -15.41788 -15.09390 -14.65626 -14.47788 -14.28460 -14.12906 -13.88990 -13.72156 -13.45985 -13.35289 -13.16675 -13.00412 -12.80433 -12.69183 -12.40543 -12.23080 -12.11377 -12.02553 -11.72839 -11.59808 -11.46188 -11.17613 -11.02719 -10.81242 -10.57017 -10.26522 -9.45869 -9.12734 -8.98479 -6.64043 0.04183 1.32816 1.34232 1.36718 1.37960 1.50922 1.52444 1.76616 1.86655 2.14980 2.29046 2.58545 2.87348 3.19640 3.49863 3.62350 3.69277 3.95548 4.06884 4.10952 4.16317 4.19253 4.38734 4.39940 4.54979 4.63278 4.82081 4.83203 4.92116 4.93551 4.94653 5.04217 5.11640 5.24047 5.27142 5.32492 5.54984 5.61030 5.79949 6.02058 6.28157 6.34165 6.46284 6.61291 7.04262 7.34817 7.94124 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.018286 B = 0.002246 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.878370 B =12466.011649 C =13713.417459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.031 3.969 3 Si 0.998 3.002 4 H -0.265 1.265 5 H -0.245 1.245 6 H -0.257 1.257 7 C -0.386 4.386 8 H 0.094 0.906 9 C 0.117 3.883 10 C -0.133 4.133 11 C -0.178 4.178 12 S 0.003 5.997 13 C -0.454 4.454 14 C 0.527 3.473 15 O -0.573 6.573 16 O -0.360 6.360 17 C 0.048 3.952 18 C 0.522 3.478 19 O -0.565 6.565 20 N -0.705 5.705 21 C 0.110 3.890 22 C 0.071 3.929 23 H 0.103 0.897 24 C -0.146 4.146 25 C -0.148 4.148 26 C 0.038 3.962 27 O -0.400 6.400 28 H 0.308 0.692 29 H 0.148 0.852 30 H 0.182 0.818 31 H 0.099 0.901 32 H 0.105 0.895 33 H 0.418 0.582 34 H 0.057 0.943 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.105 0.895 38 H 0.088 0.912 39 H 0.100 0.900 40 H 0.095 0.905 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.271 -11.758 8.029 19.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.191 4.191 3 Si 0.816 3.184 4 H -0.188 1.188 5 H -0.169 1.169 6 H -0.182 1.182 7 C -0.416 4.416 8 H 0.112 0.888 9 C 0.106 3.894 10 C -0.165 4.165 11 C -0.312 4.312 12 S 0.259 5.741 13 C -0.570 4.570 14 C 0.385 3.615 15 O -0.472 6.472 16 O -0.278 6.278 17 C -0.030 4.030 18 C 0.307 3.693 19 O -0.443 6.443 20 N -0.359 5.359 21 C -0.013 4.013 22 C 0.013 3.987 23 H 0.121 0.879 24 C -0.184 4.184 25 C -0.185 4.185 26 C -0.038 4.038 27 O -0.320 6.320 28 H 0.120 0.880 29 H 0.165 0.835 30 H 0.199 0.801 31 H 0.117 0.883 32 H 0.123 0.877 33 H 0.255 0.745 34 H 0.076 0.924 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.124 0.876 38 H 0.107 0.893 39 H 0.118 0.882 40 H 0.113 0.887 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 12.567 -13.358 8.111 20.054 hybrid contribution 0.435 2.167 0.097 2.212 sum 13.002 -11.191 8.208 19.018 Atomic orbital electron populations 1.69637 1.09078 1.32767 1.28206 1.27252 0.95908 1.05273 0.90692 0.84912 0.79011 0.74397 0.80083 1.18843 1.16851 1.18153 1.20338 0.97370 0.90465 1.33378 0.88850 1.17359 0.91544 0.91854 0.88668 1.20554 0.96691 0.97639 1.01642 1.25728 1.04139 0.96172 1.05198 1.83287 1.18267 1.11623 1.60905 1.21359 1.06970 0.97884 1.30823 1.18389 0.85409 0.79438 0.78249 1.90664 1.54127 1.42524 1.59891 1.86239 1.40893 1.32737 1.67960 1.22240 0.87944 0.94455 0.98394 1.20207 0.81649 0.89503 0.77901 1.90707 1.45294 1.53966 1.54314 1.45605 1.23665 1.10923 1.55754 1.21953 0.98452 0.81296 0.99646 1.23081 0.95324 0.95005 0.85244 0.87933 1.23168 1.03171 0.93708 0.98343 1.23286 1.00862 0.99594 0.94769 1.23597 0.99743 0.89644 0.90775 1.88454 1.94014 1.34669 1.14834 0.88016 0.83459 0.80052 0.88267 0.87676 0.74508 0.92447 0.89946 0.89955 0.87637 0.89335 0.88195 0.88686 0.92447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -35.68 10.87 21.89 0.24 -35.44 16 2 C 0.03 1.46 5.37 85.38 0.46 1.92 16 3 Si 1.00 35.68 29.57 68.60 2.03 37.70 16 4 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 5 H -0.24 -7.86 7.11 99.48 0.71 -7.15 16 6 H -0.26 -8.73 7.11 99.48 0.71 -8.02 16 7 C -0.39 -20.89 8.41 23.33 0.20 -20.70 16 8 H 0.09 5.34 6.06 -2.91 -0.02 5.32 16 9 C 0.12 6.43 5.53 -22.03 -0.12 6.31 16 10 C -0.13 -6.52 8.81 21.44 0.19 -6.33 16 11 C -0.18 -7.76 11.11 66.64 0.74 -7.02 16 12 S 0.00 0.14 23.02 -56.49 -1.30 -1.16 16 13 C -0.45 -25.18 6.36 23.49 0.15 -25.03 16 14 C 0.53 28.76 7.73 68.69 0.53 29.29 16 15 O -0.57 -32.24 14.10 19.22 0.27 -31.97 16 16 O -0.36 -17.75 9.41 -52.78 -0.50 -18.25 16 17 C 0.05 1.78 5.86 71.24 0.42 2.20 16 18 C 0.52 18.02 7.91 87.66 0.69 18.71 16 19 O -0.56 -24.55 16.50 16.00 0.26 -24.29 16 20 N -0.71 -17.10 5.53 -463.05 -2.56 -19.66 16 21 C 0.11 2.25 5.21 86.38 0.45 2.70 16 22 C 0.07 1.02 3.56 31.06 0.11 1.13 16 23 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 24 C -0.15 -1.34 6.56 31.91 0.21 -1.13 16 25 C -0.15 -1.14 7.16 32.10 0.23 -0.91 16 26 C 0.04 0.48 7.78 72.65 0.57 1.04 16 27 O -0.40 -7.25 10.99 -148.98 -1.64 -8.89 16 28 H 0.31 12.22 8.29 -92.71 -0.77 11.45 16 29 H 0.15 6.99 6.38 -2.91 -0.02 6.97 16 30 H 0.18 6.25 8.06 -2.91 -0.02 6.23 16 31 H 0.10 3.46 8.13 -2.38 -0.02 3.44 16 32 H 0.11 3.51 8.13 -2.39 -0.02 3.49 16 33 H 0.42 7.92 8.47 -92.71 -0.79 7.14 16 34 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.08 0.79 7.85 -2.38 -0.02 0.77 16 37 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.09 0.55 8.14 -2.38 -0.02 0.53 16 39 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -73.86 365.14 1.92 -71.94 By element: Atomic # 1 Polarization: 27.53 SS G_CDS: 0.29 Total: 27.83 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: 4.82 Total: 2.19 kcal Atomic # 7 Polarization: -52.78 SS G_CDS: -2.32 Total: -55.10 kcal Atomic # 8 Polarization: -81.80 SS G_CDS: -1.60 Total: -83.40 kcal Atomic # 14 Polarization: 35.68 SS G_CDS: 2.03 Total: 37.70 kcal Atomic # 16 Polarization: 0.14 SS G_CDS: -1.30 Total: -1.16 kcal Total: -73.86 1.92 -71.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870044853.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.582 kcal (2) G-P(sol) polarization free energy of solvation -73.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds