Wall clock time and date at job start Tue Mar 31 2020 22:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38382 * 119.92954 * 2 1 4 4 C 1.38351 * 120.30480 * 180.02562 * 3 2 1 5 5 S 1.76195 * 119.92630 * 180.02562 * 4 3 2 6 6 O 1.42101 * 106.40349 * 336.46048 * 5 4 3 7 7 O 1.42094 * 106.40330 * 203.53724 * 5 4 3 8 8 N 1.65602 * 107.21813 * 89.99757 * 5 4 3 9 9 C 1.36938 * 120.00209 * 90.00197 * 8 5 4 10 10 H 1.07998 * 120.00243 * 228.54756 * 9 8 5 11 11 C 1.38815 * 120.00003 * 48.81849 * 9 8 5 12 12 N 1.31615 * 119.99889 * 25.28292 * 11 9 8 13 13 Si 1.86800 * 119.99932 * 205.28514 * 11 9 8 14 14 H 1.48508 * 109.46771 * 90.00023 * 13 11 9 15 15 H 1.48502 * 109.47110 * 209.99711 * 13 11 9 16 16 H 1.48492 * 109.47246 * 330.00064 * 13 11 9 17 17 C 1.46496 * 120.00109 * 269.99970 * 8 5 4 18 18 C 1.52998 * 117.50157 * 185.30051 * 17 8 5 19 19 C 1.53007 * 117.50161 * 116.63850 * 17 8 5 20 20 C 1.37966 * 120.14879 * 0.27180 * 4 3 2 21 21 C 1.39611 * 119.84583 * 359.47930 * 20 4 3 22 22 C 1.47731 * 120.15024 * 180.22554 * 21 20 4 23 23 O 1.21465 * 120.00147 * 186.05745 * 22 21 20 24 24 O 1.34715 * 119.99558 * 6.06141 * 22 21 20 25 25 C 1.37930 * 119.92110 * 180.02562 * 2 1 3 26 26 C 1.50703 * 120.07603 * 0.02562 * 25 2 1 27 27 H 1.09001 * 109.46695 * 89.99658 * 1 2 3 28 28 H 1.08996 * 109.47362 * 209.99648 * 1 2 3 29 29 H 1.08994 * 109.46833 * 330.00363 * 1 2 3 30 30 H 1.07997 * 119.84919 * 0.02562 * 3 2 1 31 31 H 0.96998 * 119.99904 * 181.90922 * 12 11 9 32 32 H 1.09003 * 115.54900 * 330.97063 * 17 8 5 33 33 H 1.09005 * 117.49931 * 0.02562 * 18 17 8 34 34 H 1.09000 * 117.50116 * 145.02054 * 18 17 8 35 35 H 1.08997 * 117.49896 * 214.98174 * 19 17 8 36 36 H 1.08998 * 117.49451 * 359.97438 * 19 17 8 37 37 H 1.07996 * 120.07868 * 179.72943 * 20 4 3 38 38 H 0.96698 * 116.99430 * 179.97438 * 24 22 21 39 39 H 1.08991 * 109.47212 * 96.25838 * 26 25 2 40 40 H 1.09003 * 109.46851 * 216.26124 * 26 25 2 41 41 H 1.08999 * 109.46951 * 336.25712 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5809 1.2083 -0.0005 5 16 4.4499 2.7411 0.0002 6 8 3.5604 3.7069 -0.5433 7 8 5.7347 2.4742 -0.5449 8 7 4.6922 3.1665 1.5821 9 6 5.8241 2.7575 2.2355 10 1 5.7494 2.3041 3.2128 11 6 7.0679 2.9310 1.6441 12 7 7.2451 3.8812 0.7508 13 14 8.4901 1.8157 2.1160 14 1 8.5067 0.6297 1.2222 15 1 9.7687 2.5582 1.9769 16 1 8.3257 1.3724 3.5236 17 6 3.6958 3.9804 2.2827 18 6 4.0333 4.4445 3.7010 19 6 2.9856 3.3500 3.4824 20 6 4.2816 0.0199 -0.0067 21 6 3.5914 -1.1937 -0.0015 22 6 4.3350 -2.4702 -0.0030 23 8 3.7363 -3.5217 -0.1095 24 8 5.6771 -2.4680 0.1137 25 6 2.1950 -1.1955 -0.0005 26 6 1.4414 -2.5006 -0.0017 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5137 29 1 -0.3633 0.8900 0.5138 30 1 1.6538 2.1325 0.0004 31 1 8.1065 3.9847 0.3172 32 1 3.1178 4.6589 1.6553 33 1 4.9970 4.1446 4.1128 34 1 3.6770 5.4281 4.0069 35 1 1.9406 3.6141 3.6445 36 1 3.2596 2.3295 3.7502 37 1 5.3616 0.0283 -0.0116 38 1 6.1196 -3.3278 0.1080 39 1 1.3571 -2.8705 -1.0234 40 1 1.9771 -3.2299 0.6059 41 1 0.4450 -2.3451 0.4118 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871840427.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:09 Heat of formation + Delta-G solvation = -99.543797 kcal Electronic energy + Delta-G solvation = -28594.867075 eV Core-core repulsion = 24568.267772 eV Total energy + Delta-G solvation = -4026.599303 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.47801 -38.73465 -37.21705 -36.08424 -35.73219 -34.20944 -33.39295 -33.22372 -32.10780 -30.67628 -27.93475 -26.44156 -25.00187 -24.18069 -21.66064 -21.17159 -20.99788 -20.56252 -18.89434 -17.88356 -17.50034 -16.40190 -16.09931 -15.77526 -15.68196 -15.53647 -15.11663 -14.72077 -14.25734 -14.13476 -13.93400 -13.44563 -13.37136 -12.96353 -12.72401 -12.50870 -12.40112 -12.07122 -11.85193 -11.68403 -11.54346 -11.49172 -11.41453 -11.33445 -11.14432 -10.88720 -10.68042 -10.48779 -10.40721 -10.32451 -10.11044 -10.01789 -9.67181 -9.41979 -8.85460 -8.68180 -8.51804 -7.62774 -6.57889 -4.22317 0.82596 1.32673 1.88652 2.60418 3.12086 3.20338 3.26323 3.29802 3.74512 4.09584 4.51577 4.65966 4.78106 4.87731 4.93108 5.08601 5.14120 5.27768 5.35009 5.55544 5.57210 5.66748 5.70644 5.73505 5.78602 5.79532 5.85562 5.90583 6.02120 6.11858 6.23152 6.25856 6.36863 6.44834 6.55118 6.61110 6.66038 6.70917 6.93677 7.05074 7.33983 7.43457 7.97904 8.14877 8.82994 9.24720 10.46714 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.010994 B = 0.005917 C = 0.004584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2546.160358 B = 4731.022492 C = 6107.183050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.132 4.132 3 C 0.010 3.990 4 C -0.676 4.676 5 S 2.562 3.438 6 O -1.010 7.010 7 O -0.942 6.942 8 N -0.785 5.785 9 C -0.283 4.283 10 H 0.083 0.917 11 C 0.063 3.937 12 N -0.770 5.770 13 Si 0.915 3.085 14 H -0.266 1.266 15 H -0.281 1.281 16 H -0.268 1.268 17 C 0.095 3.905 18 C -0.162 4.162 19 C -0.214 4.214 20 C 0.038 3.962 21 C -0.162 4.162 22 C 0.532 3.468 23 O -0.520 6.520 24 O -0.506 6.506 25 C 0.008 3.992 26 C -0.128 4.128 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.137 0.863 31 H 0.281 0.719 32 H 0.119 0.881 33 H 0.108 0.892 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.150 0.850 38 H 0.411 0.589 39 H 0.077 0.923 40 H 0.092 0.908 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.551 -7.414 2.437 10.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.132 4.132 3 C -0.009 4.009 4 C -0.751 4.751 5 S 2.660 3.340 6 O -1.000 7.000 7 O -0.930 6.930 8 N -0.607 5.607 9 C -0.430 4.430 10 H 0.101 0.899 11 C -0.156 4.156 12 N -0.405 5.405 13 Si 0.740 3.260 14 H -0.191 1.191 15 H -0.207 1.207 16 H -0.192 1.192 17 C -0.014 4.014 18 C -0.201 4.201 19 C -0.254 4.254 20 C 0.019 3.981 21 C -0.164 4.164 22 C 0.378 3.622 23 O -0.412 6.412 24 O -0.317 6.317 25 C 0.007 3.993 26 C -0.184 4.184 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.155 0.845 31 H 0.092 0.908 32 H 0.136 0.864 33 H 0.127 0.873 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.110 0.890 37 H 0.168 0.832 38 H 0.269 0.731 39 H 0.095 0.905 40 H 0.111 0.889 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.747 -6.839 1.297 10.415 hybrid contribution 0.695 -1.716 0.248 1.868 sum -7.052 -8.555 1.545 11.194 Atomic orbital electron populations 1.20823 0.90581 1.03004 1.02425 1.19774 0.96353 0.92319 1.04795 1.21058 0.92800 0.97928 0.89071 1.32759 1.05901 1.24654 1.11765 1.10712 0.72993 0.73538 0.76709 1.93301 1.67636 1.59557 1.79503 1.93436 1.37273 1.84519 1.77801 1.52378 1.22744 1.53993 1.31589 1.18975 0.81775 1.38247 1.03989 0.89893 1.25659 0.99165 0.94585 0.96176 1.69885 1.25979 1.23713 1.20934 0.86119 0.79817 0.80885 0.79163 1.19144 1.20657 1.19225 1.21403 0.94427 0.96920 0.88621 1.23077 1.00535 0.97468 0.98994 1.23374 0.96694 0.98808 1.06503 1.21225 1.00836 0.89676 0.86396 1.18966 0.92746 0.90906 1.13763 1.20908 0.80297 0.89246 0.71714 1.90791 1.69059 1.33989 1.47337 1.84666 1.21335 1.40592 1.85067 1.19887 0.91511 0.95782 0.92080 1.21240 0.99513 0.94119 1.03538 0.91210 0.91075 0.91218 0.84526 0.90834 0.86364 0.87329 0.89709 0.89735 0.89036 0.83242 0.73122 0.90494 0.88944 0.91472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.28 9.59 36.01 0.35 -0.93 16 2 C -0.13 -2.06 5.87 -104.68 -0.61 -2.67 16 3 C 0.01 0.19 9.17 -39.49 -0.36 -0.17 16 4 C -0.68 -14.00 5.97 -39.64 -0.24 -14.24 16 5 S 2.56 61.97 5.45 -107.50 -0.59 61.38 16 6 O -1.01 -25.79 16.08 -57.17 -0.92 -26.71 16 7 O -0.94 -25.44 13.32 -57.17 -0.76 -26.21 16 8 N -0.79 -18.20 3.04 -53.42 -0.16 -18.36 16 9 C -0.28 -6.73 7.76 -15.06 -0.12 -6.85 16 10 H 0.08 1.87 7.61 -52.49 -0.40 1.47 16 11 C 0.06 1.57 4.00 -17.43 -0.07 1.50 16 12 N -0.77 -20.58 11.59 55.49 0.64 -19.94 16 13 Si 0.92 19.40 29.62 -169.99 -5.04 14.36 16 14 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 15 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16 16 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 17 C 0.10 1.91 6.34 -67.93 -0.43 1.48 16 18 C -0.16 -2.80 9.82 -26.69 -0.26 -3.07 16 19 C -0.21 -3.54 10.33 -26.69 -0.28 -3.81 16 20 C 0.04 0.75 9.09 -39.17 -0.36 0.40 16 21 C -0.16 -2.88 5.87 -104.98 -0.62 -3.49 16 22 C 0.53 8.60 8.21 34.61 0.28 8.89 16 23 O -0.52 -8.56 14.12 -19.24 -0.27 -8.84 16 24 O -0.51 -7.11 12.70 -40.53 -0.51 -7.62 16 25 C 0.01 0.13 5.92 -104.21 -0.62 -0.49 16 26 C -0.13 -1.69 8.43 36.01 0.30 -1.38 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.07 0.69 5.88 -51.93 -0.31 0.39 16 29 H 0.07 0.72 8.08 -51.93 -0.42 0.30 16 30 H 0.14 2.32 7.60 -52.49 -0.40 1.92 16 31 H 0.28 7.12 8.31 -40.82 -0.34 6.78 16 32 H 0.12 2.34 7.43 -51.93 -0.39 1.95 16 33 H 0.11 2.01 6.88 -51.93 -0.36 1.65 16 34 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 37 H 0.15 3.08 7.17 -52.49 -0.38 2.71 16 38 H 0.41 3.47 9.11 45.56 0.42 3.89 16 39 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.09 1.31 5.82 -51.93 -0.30 1.00 16 41 H 0.07 0.72 5.72 -51.93 -0.30 0.42 16 LS Contribution 353.95 15.07 5.33 5.33 Total: -1.00 -31.76 353.95 -9.38 -41.13 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -4.08 Total: 10.30 kcal Atomic # 6 Polarization: -21.82 SS G_CDS: -3.02 Total: -24.84 kcal Atomic # 7 Polarization: -38.78 SS G_CDS: 0.48 Total: -38.30 kcal Atomic # 8 Polarization: -66.90 SS G_CDS: -2.47 Total: -69.37 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.04 Total: 14.36 kcal Atomic # 16 Polarization: 61.97 SS G_CDS: -0.59 Total: 61.38 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.76 -9.38 -41.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871840427.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.410 kcal (2) G-P(sol) polarization free energy of solvation -31.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds