Wall clock time and date at job start Tue Mar 31 2020 22:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38382 * 119.92954 * 2 1 4 4 C 1.38351 * 120.30480 * 180.02562 * 3 2 1 5 5 S 1.76195 * 119.92630 * 180.02562 * 4 3 2 6 6 O 1.42101 * 106.40349 * 336.46048 * 5 4 3 7 7 O 1.42094 * 106.40330 * 203.53724 * 5 4 3 8 8 N 1.65602 * 107.21813 * 89.99757 * 5 4 3 9 9 C 1.36938 * 120.00209 * 90.00197 * 8 5 4 10 10 H 1.07998 * 120.00243 * 228.54756 * 9 8 5 11 11 C 1.38815 * 120.00003 * 48.81849 * 9 8 5 12 12 N 1.31615 * 119.99889 * 25.28292 * 11 9 8 13 13 Si 1.86800 * 119.99932 * 205.28514 * 11 9 8 14 14 H 1.48508 * 109.46771 * 90.00023 * 13 11 9 15 15 H 1.48502 * 109.47110 * 209.99711 * 13 11 9 16 16 H 1.48492 * 109.47246 * 330.00064 * 13 11 9 17 17 C 1.46496 * 120.00109 * 269.99970 * 8 5 4 18 18 C 1.52998 * 117.50157 * 185.30051 * 17 8 5 19 19 C 1.53007 * 117.50161 * 116.63850 * 17 8 5 20 20 C 1.37966 * 120.14879 * 0.27180 * 4 3 2 21 21 C 1.39611 * 119.84583 * 359.47930 * 20 4 3 22 22 C 1.47731 * 120.15024 * 180.22554 * 21 20 4 23 23 O 1.21465 * 120.00147 * 186.05745 * 22 21 20 24 24 O 1.34715 * 119.99558 * 6.06141 * 22 21 20 25 25 C 1.37930 * 119.92110 * 180.02562 * 2 1 3 26 26 C 1.50703 * 120.07603 * 0.02562 * 25 2 1 27 27 H 1.09001 * 109.46695 * 89.99658 * 1 2 3 28 28 H 1.08996 * 109.47362 * 209.99648 * 1 2 3 29 29 H 1.08994 * 109.46833 * 330.00363 * 1 2 3 30 30 H 1.07997 * 119.84919 * 0.02562 * 3 2 1 31 31 H 0.96998 * 119.99904 * 181.90922 * 12 11 9 32 32 H 1.09003 * 115.54900 * 330.97063 * 17 8 5 33 33 H 1.09005 * 117.49931 * 0.02562 * 18 17 8 34 34 H 1.09000 * 117.50116 * 145.02054 * 18 17 8 35 35 H 1.08997 * 117.49896 * 214.98174 * 19 17 8 36 36 H 1.08998 * 117.49451 * 359.97438 * 19 17 8 37 37 H 1.07996 * 120.07868 * 179.72943 * 20 4 3 38 38 H 0.96698 * 116.99430 * 179.97438 * 24 22 21 39 39 H 1.08991 * 109.47212 * 96.25838 * 26 25 2 40 40 H 1.09003 * 109.46851 * 216.26124 * 26 25 2 41 41 H 1.08999 * 109.46951 * 336.25712 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5809 1.2083 -0.0005 5 16 4.4499 2.7411 0.0002 6 8 3.5604 3.7069 -0.5433 7 8 5.7347 2.4742 -0.5449 8 7 4.6922 3.1665 1.5821 9 6 5.8241 2.7575 2.2355 10 1 5.7494 2.3041 3.2128 11 6 7.0679 2.9310 1.6441 12 7 7.2451 3.8812 0.7508 13 14 8.4901 1.8157 2.1160 14 1 8.5067 0.6297 1.2222 15 1 9.7687 2.5582 1.9769 16 1 8.3257 1.3724 3.5236 17 6 3.6958 3.9804 2.2827 18 6 4.0333 4.4445 3.7010 19 6 2.9856 3.3500 3.4824 20 6 4.2816 0.0199 -0.0067 21 6 3.5914 -1.1937 -0.0015 22 6 4.3350 -2.4702 -0.0030 23 8 3.7363 -3.5217 -0.1095 24 8 5.6771 -2.4680 0.1137 25 6 2.1950 -1.1955 -0.0005 26 6 1.4414 -2.5006 -0.0017 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5137 29 1 -0.3633 0.8900 0.5138 30 1 1.6538 2.1325 0.0004 31 1 8.1065 3.9847 0.3172 32 1 3.1178 4.6589 1.6553 33 1 4.9970 4.1446 4.1128 34 1 3.6770 5.4281 4.0069 35 1 1.9406 3.6141 3.6445 36 1 3.2596 2.3295 3.7502 37 1 5.3616 0.0283 -0.0116 38 1 6.1196 -3.3278 0.1080 39 1 1.3571 -2.8705 -1.0234 40 1 1.9771 -3.2299 0.6059 41 1 0.4450 -2.3451 0.4118 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871840427.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:08 Heat of formation + Delta-G solvation = -120.494937 kcal Electronic energy + Delta-G solvation = -28595.775585 eV Core-core repulsion = 24568.267772 eV Total energy + Delta-G solvation = -4027.507813 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.74337 -40.01863 -38.77188 -37.69547 -37.28544 -36.18258 -35.09763 -34.55196 -33.39424 -32.44376 -29.08387 -27.63830 -26.81746 -25.46307 -23.02654 -22.62289 -22.25447 -22.11767 -20.70180 -19.13012 -19.02347 -18.14523 -17.72536 -17.23898 -16.97593 -16.95801 -16.74473 -16.22715 -15.93802 -15.54836 -15.13456 -15.10062 -14.65711 -14.20241 -14.09015 -13.70436 -13.65797 -13.55872 -13.20788 -13.15435 -13.05072 -12.94492 -12.84817 -12.60395 -12.57718 -12.55815 -12.41974 -12.32952 -12.12670 -11.99446 -11.62661 -11.39643 -11.20836 -10.95828 -10.50146 -10.24581 -9.82615 -9.35815 -8.42318 -6.10714 -0.53448 -0.13036 0.10869 1.30427 1.47720 1.55394 1.60581 1.97168 2.29731 2.40039 2.82121 3.00415 3.21549 3.45706 3.52516 3.71574 3.85167 3.91525 4.15235 4.18472 4.25576 4.26900 4.39665 4.42820 4.56404 4.64291 4.72853 4.77544 4.84944 4.87885 4.96605 4.97131 5.09561 5.16932 5.24781 5.28210 5.39371 5.47474 5.49303 5.55873 5.76583 5.80283 6.28510 6.88894 7.01975 7.43373 8.62010 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.010994 B = 0.005917 C = 0.004584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2546.160358 B = 4731.022492 C = 6107.183050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.120 4.120 3 C -0.002 4.002 4 C -0.693 4.693 5 S 2.573 3.427 6 O -1.034 7.034 7 O -0.981 6.981 8 N -0.798 5.798 9 C -0.289 4.289 10 H 0.093 0.907 11 C 0.023 3.977 12 N -0.819 5.819 13 Si 0.963 3.037 14 H -0.277 1.277 15 H -0.278 1.278 16 H -0.244 1.244 17 C 0.052 3.948 18 C -0.154 4.154 19 C -0.183 4.183 20 C 0.019 3.981 21 C -0.171 4.171 22 C 0.536 3.464 23 O -0.522 6.522 24 O -0.510 6.510 25 C 0.010 3.990 26 C -0.124 4.124 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.081 0.919 30 H 0.144 0.856 31 H 0.277 0.723 32 H 0.113 0.887 33 H 0.094 0.906 34 H 0.112 0.888 35 H 0.118 0.882 36 H 0.086 0.914 37 H 0.130 0.870 38 H 0.434 0.566 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.165 -9.478 3.859 14.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.120 4.120 3 C -0.021 4.021 4 C -0.773 4.773 5 S 2.676 3.324 6 O -1.024 7.024 7 O -0.970 6.970 8 N -0.621 5.621 9 C -0.434 4.434 10 H 0.111 0.889 11 C -0.192 4.192 12 N -0.455 5.455 13 Si 0.785 3.215 14 H -0.203 1.203 15 H -0.203 1.203 16 H -0.167 1.167 17 C -0.056 4.056 18 C -0.193 4.193 19 C -0.222 4.222 20 C 0.000 4.000 21 C -0.173 4.173 22 C 0.382 3.618 23 O -0.414 6.414 24 O -0.324 6.324 25 C 0.010 3.990 26 C -0.179 4.179 27 H 0.105 0.895 28 H 0.113 0.887 29 H 0.100 0.900 30 H 0.161 0.839 31 H 0.087 0.913 32 H 0.131 0.869 33 H 0.112 0.888 34 H 0.130 0.870 35 H 0.136 0.864 36 H 0.105 0.895 37 H 0.148 0.852 38 H 0.296 0.704 39 H 0.104 0.896 40 H 0.103 0.897 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.317 -8.868 2.769 13.883 hybrid contribution 1.340 -1.185 -0.235 1.804 sum -8.977 -10.053 2.534 13.714 Atomic orbital electron populations 1.20982 0.86954 1.04888 1.04060 1.20227 0.98756 0.90921 1.02126 1.21239 0.91718 0.99584 0.89540 1.32106 1.07181 1.22980 1.15044 1.09506 0.72293 0.73961 0.76668 1.93255 1.67945 1.61034 1.80140 1.93386 1.39417 1.85414 1.78773 1.52249 1.23642 1.55019 1.31149 1.19195 0.81948 1.37956 1.04331 0.88910 1.26483 1.01473 0.95238 0.96002 1.69972 1.26318 1.25951 1.23275 0.85393 0.77393 0.78853 0.79835 1.20262 1.20338 1.16692 1.21654 0.95596 0.98575 0.89745 1.23147 1.00479 0.99291 0.96365 1.23395 0.98163 0.98262 1.02404 1.21065 1.00088 0.90633 0.88244 1.19214 0.93987 0.90712 1.13378 1.20631 0.80836 0.88588 0.71766 1.90790 1.69326 1.33752 1.47566 1.84629 1.20546 1.42692 1.84538 1.20368 0.90972 0.97480 0.90214 1.21291 1.00536 0.91955 1.04112 0.89512 0.88652 0.89965 0.83863 0.91337 0.86926 0.88759 0.86971 0.86359 0.89527 0.85180 0.70395 0.89599 0.89720 0.88274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.05 9.59 71.24 0.68 -1.37 16 2 C -0.12 -3.40 5.87 -19.90 -0.12 -3.51 16 3 C 0.00 -0.06 9.17 22.33 0.20 0.14 16 4 C -0.69 -29.26 5.97 22.23 0.13 -29.13 16 5 S 2.57 129.81 5.45 -56.49 -0.31 129.50 16 6 O -1.03 -54.83 16.08 -128.00 -2.06 -56.89 16 7 O -0.98 -56.12 13.32 -128.00 -1.70 -57.82 16 8 N -0.80 -38.03 3.04 -322.94 -0.98 -39.02 16 9 C -0.29 -14.10 7.76 84.03 0.65 -13.45 16 10 H 0.09 4.22 7.61 -2.91 -0.02 4.20 16 11 C 0.02 1.16 4.00 84.86 0.34 1.50 16 12 N -0.82 -46.01 11.59 21.65 0.25 -45.76 16 13 Si 0.96 40.57 29.62 68.60 2.03 42.60 16 14 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 15 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 16 H -0.24 -9.21 7.11 99.48 0.71 -8.50 16 17 C 0.05 2.10 6.34 44.99 0.29 2.39 16 18 C -0.15 -5.15 9.82 30.62 0.30 -4.85 16 19 C -0.18 -5.67 10.33 30.62 0.32 -5.36 16 20 C 0.02 0.78 9.09 22.54 0.20 0.99 16 21 C -0.17 -5.92 5.87 -20.10 -0.12 -6.04 16 22 C 0.54 16.65 8.21 70.33 0.58 17.22 16 23 O -0.52 -16.07 14.12 19.95 0.28 -15.78 16 24 O -0.51 -13.91 12.70 -56.25 -0.71 -14.63 16 25 C 0.01 0.30 5.92 -19.60 -0.12 0.19 16 26 C -0.12 -2.75 8.43 71.24 0.60 -2.15 16 27 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.09 1.30 5.88 -2.39 -0.01 1.29 16 29 H 0.08 1.34 8.08 -2.39 -0.02 1.32 16 30 H 0.14 4.75 7.60 -2.91 -0.02 4.73 16 31 H 0.28 14.90 8.31 -92.71 -0.77 14.13 16 32 H 0.11 4.54 7.43 -2.39 -0.02 4.52 16 33 H 0.09 3.44 6.88 -2.38 -0.02 3.43 16 34 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 35 H 0.12 2.87 8.14 -2.39 -0.02 2.85 16 36 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 37 H 0.13 5.69 7.17 -2.91 -0.02 5.67 16 38 H 0.43 6.69 9.11 -74.06 -0.67 6.01 16 39 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.08 2.10 5.82 -2.39 -0.01 2.08 16 41 H 0.10 1.58 5.72 -2.39 -0.01 1.56 16 Total: -1.00 -72.14 353.95 1.16 -70.98 By element: Atomic # 1 Polarization: 29.85 SS G_CDS: 0.42 Total: 30.26 kcal Atomic # 6 Polarization: -47.39 SS G_CDS: 3.95 Total: -43.44 kcal Atomic # 7 Polarization: -84.04 SS G_CDS: -0.73 Total: -84.77 kcal Atomic # 8 Polarization: -140.93 SS G_CDS: -4.20 Total: -145.13 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 2.03 Total: 42.60 kcal Atomic # 16 Polarization: 129.81 SS G_CDS: -0.31 Total: 129.50 kcal Total: -72.14 1.16 -70.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871840427.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.520 kcal (2) G-P(sol) polarization free energy of solvation -72.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds