Wall clock time and date at job start Tue Mar 31 2020 22:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50697 * 109.47095 * 2 1 4 4 C 1.37974 * 120.07740 * 101.50707 * 3 2 1 5 5 C 1.38339 * 120.15236 * 180.02562 * 4 3 2 6 6 C 1.38391 * 120.30361 * 359.97438 * 5 4 3 7 7 S 1.76195 * 119.92808 * 179.97438 * 6 5 4 8 8 O 1.42101 * 106.40346 * 336.46730 * 7 6 5 9 9 O 1.42093 * 106.40655 * 203.54290 * 7 6 5 10 10 N 1.65608 * 107.21738 * 90.00503 * 7 6 5 11 11 C 1.36928 * 120.00153 * 90.00263 * 10 7 6 12 12 H 1.08006 * 119.99975 * 228.25982 * 11 10 7 13 13 C 1.38810 * 120.00428 * 48.25224 * 11 10 7 14 14 N 1.31620 * 119.99377 * 25.03372 * 13 11 10 15 15 Si 1.86795 * 120.00536 * 205.02792 * 13 11 10 16 16 H 1.48508 * 109.47045 * 90.00369 * 15 13 11 17 17 H 1.48495 * 109.47426 * 209.99980 * 15 13 11 18 18 H 1.48503 * 109.47224 * 330.00414 * 15 13 11 19 19 C 1.46497 * 119.99619 * 269.72652 * 10 7 6 20 20 C 1.53003 * 117.49979 * 193.25780 * 19 10 7 21 21 C 1.53006 * 117.49934 * 124.60246 * 19 10 7 22 22 C 1.37927 * 120.14763 * 0.26443 * 6 5 4 23 23 C 1.39605 * 120.07597 * 281.52546 * 3 2 1 24 24 C 1.47725 * 120.15101 * 0.02562 * 23 3 2 25 25 O 1.21468 * 119.99886 * 357.00607 * 24 23 3 26 26 O 1.34716 * 120.00007 * 177.00713 * 24 23 3 27 27 H 1.08999 * 109.46733 * 300.00258 * 1 2 3 28 28 H 1.09003 * 109.46720 * 59.99810 * 1 2 3 29 29 H 1.08995 * 109.46854 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47134 * 239.99576 * 2 1 3 31 31 H 1.09003 * 109.46720 * 120.00189 * 2 1 3 32 32 H 1.08004 * 119.92070 * 359.97438 * 4 3 2 33 33 H 1.07995 * 119.85206 * 179.97438 * 5 4 3 34 34 H 0.97006 * 120.00139 * 184.90949 * 14 13 11 35 35 H 1.08998 * 115.55367 * 338.93065 * 19 10 7 36 36 H 1.09001 * 117.49638 * 0.02562 * 20 19 10 37 37 H 1.08995 * 117.50087 * 145.02060 * 20 19 10 38 38 H 1.09001 * 117.50152 * 214.97965 * 21 19 10 39 39 H 1.09002 * 117.49348 * 359.97024 * 21 19 10 40 40 H 1.08008 * 120.07539 * 179.72308 * 22 6 5 41 41 H 0.96694 * 116.99418 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.4874 1.9933 1.1700 5 6 2.9484 3.2977 1.1718 6 6 2.9571 4.0369 0.0019 7 16 3.5458 5.6975 0.0158 8 8 3.4081 6.1610 1.3520 9 8 2.9454 6.3454 -1.0973 10 7 5.1715 5.6440 -0.2954 11 6 5.6241 5.7094 -1.5860 12 1 6.3578 4.9991 -1.9377 13 6 5.1398 6.6885 -2.4426 14 7 4.6619 7.8130 -1.9534 15 14 5.1666 6.4102 -4.2895 16 1 3.8974 5.7645 -4.7113 17 1 5.3133 7.7142 -4.9846 18 1 6.3102 5.5304 -4.6411 19 6 6.1256 5.5327 0.8107 20 6 7.6003 5.7980 0.5010 21 6 7.1197 4.3702 0.7720 22 6 2.5005 3.4785 -1.1737 23 6 2.0380 2.1609 -1.1837 24 6 1.5514 1.5548 -2.4400 25 8 1.1962 0.3934 -2.4563 26 8 1.5017 2.2903 -3.5676 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 2.4830 1.4221 2.0866 33 1 3.3031 3.7411 2.0904 34 1 4.2585 8.4669 -2.5456 35 1 5.7525 5.8435 1.7865 36 1 7.8605 6.0557 -0.5256 37 1 8.1974 6.2830 1.2732 38 1 7.4008 3.9165 1.7224 39 1 7.0633 3.6880 -0.0763 40 1 2.5037 4.0580 -2.0852 41 1 1.1765 1.8501 -4.3647 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871840542.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:48 Heat of formation + Delta-G solvation = -99.914567 kcal Electronic energy + Delta-G solvation = -28508.011809 eV Core-core repulsion = 24481.396428 eV Total energy + Delta-G solvation = -4026.615381 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.51254 -38.51906 -37.22075 -36.16333 -35.74775 -34.22450 -33.79106 -33.31801 -31.20995 -30.68320 -29.44692 -25.02249 -24.84085 -23.52698 -21.90286 -21.62178 -20.80349 -20.49525 -18.96421 -18.17506 -17.67403 -16.43625 -16.08436 -15.85815 -15.66736 -15.31232 -15.14301 -14.90057 -14.27609 -13.96798 -13.80789 -13.76585 -13.31737 -13.30022 -12.86102 -12.54999 -12.35753 -11.84144 -11.75340 -11.64945 -11.54463 -11.47354 -11.17587 -11.13644 -10.94411 -10.86138 -10.67923 -10.49766 -10.41649 -10.32053 -10.10646 -10.04203 -9.66701 -9.44518 -8.89845 -8.77869 -8.66360 -7.61793 -6.57035 -4.23619 0.80617 1.33573 1.87480 2.61678 3.12211 3.20305 3.26011 3.29115 3.76672 4.09928 4.50708 4.67644 4.75665 4.82422 4.87451 5.15396 5.21218 5.27859 5.41883 5.46811 5.53910 5.67716 5.69437 5.72918 5.80075 5.81853 5.92241 6.01677 6.07773 6.17156 6.22733 6.27229 6.34162 6.38419 6.54843 6.60093 6.66406 6.71160 6.96674 7.02483 7.33885 7.43401 7.98011 8.14671 8.81983 9.23738 10.46475 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.012136 B = 0.005352 C = 0.004402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.652339 B = 5230.798889 C = 6359.226223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.097 4.097 3 C 0.012 3.988 4 C -0.161 4.161 5 C 0.008 3.992 6 C -0.679 4.679 7 S 2.562 3.438 8 O -1.011 7.011 9 O -0.941 6.941 10 N -0.786 5.786 11 C -0.281 4.281 12 H 0.083 0.917 13 C 0.062 3.938 14 N -0.769 5.769 15 Si 0.913 3.087 16 H -0.267 1.267 17 H -0.281 1.281 18 H -0.268 1.268 19 C 0.094 3.906 20 C -0.164 4.164 21 C -0.212 4.212 22 C 0.042 3.958 23 C -0.163 4.163 24 C 0.530 3.470 25 O -0.516 6.516 26 O -0.507 6.507 27 H 0.048 0.952 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.100 0.900 31 H 0.067 0.933 32 H 0.131 0.869 33 H 0.137 0.863 34 H 0.281 0.719 35 H 0.120 0.880 36 H 0.108 0.892 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.092 0.908 40 H 0.150 0.850 41 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.512 -10.464 1.495 10.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.134 4.134 3 C 0.011 3.989 4 C -0.179 4.179 5 C -0.011 4.011 6 C -0.754 4.754 7 S 2.660 3.340 8 O -1.000 7.000 9 O -0.929 6.929 10 N -0.607 5.607 11 C -0.428 4.428 12 H 0.101 0.899 13 C -0.157 4.157 14 N -0.404 5.404 15 Si 0.738 3.262 16 H -0.192 1.192 17 H -0.206 1.206 18 H -0.192 1.192 19 C -0.015 4.015 20 C -0.203 4.203 21 C -0.252 4.252 22 C 0.023 3.977 23 C -0.165 4.165 24 C 0.377 3.623 25 O -0.407 6.407 26 O -0.318 6.318 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.118 0.882 31 H 0.085 0.915 32 H 0.149 0.851 33 H 0.155 0.845 34 H 0.092 0.908 35 H 0.138 0.862 36 H 0.127 0.873 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.110 0.890 40 H 0.168 0.832 41 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -2.287 -9.748 2.155 10.242 hybrid contribution -0.385 -1.127 -1.398 1.837 sum -2.672 -10.875 0.756 11.224 Atomic orbital electron populations 1.21614 0.94337 1.01638 1.01657 1.20879 0.96824 0.91928 1.03741 1.20098 0.91777 0.95505 0.91495 1.21081 1.03346 0.96077 0.97419 1.21184 0.90035 0.92698 0.97136 1.32775 1.12929 1.32007 0.97716 1.10743 0.74971 0.75218 0.73022 1.93303 1.86897 1.80383 1.39441 1.93440 1.76823 1.70920 1.51755 1.52368 1.18481 1.80487 1.09383 1.18989 1.26084 1.11404 0.86296 0.89896 1.25639 0.96160 0.92679 1.01228 1.69892 1.27550 1.04321 1.38663 0.86144 0.79375 0.78268 0.82393 1.19198 1.20646 1.19227 1.21401 0.87297 1.01233 0.91547 1.23085 0.96294 0.97622 1.03298 1.23338 1.07287 0.92390 1.02180 1.21256 0.86527 0.92005 0.97921 1.18983 1.10471 0.96285 0.90739 1.20918 0.74041 0.83594 0.83788 1.90794 1.46233 1.17708 1.85961 1.84664 1.79451 1.47343 1.20305 0.93259 0.92349 0.92443 0.88158 0.91470 0.85071 0.84485 0.90780 0.86204 0.87338 0.89792 0.89818 0.88950 0.83210 0.73133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.40 37.16 0.35 -1.33 16 2 C -0.10 -1.27 5.34 -27.88 -0.15 -1.42 16 3 C 0.01 0.18 5.18 -104.21 -0.54 -0.35 16 4 C -0.16 -2.43 9.66 -39.64 -0.38 -2.81 16 5 C 0.01 0.15 9.52 -39.49 -0.38 -0.23 16 6 C -0.68 -13.86 5.97 -39.64 -0.24 -14.10 16 7 S 2.56 61.44 5.45 -107.50 -0.59 60.85 16 8 O -1.01 -25.61 16.02 -57.17 -0.92 -26.52 16 9 O -0.94 -25.22 13.24 -57.17 -0.76 -25.98 16 10 N -0.79 -18.10 3.07 -53.42 -0.16 -18.26 16 11 C -0.28 -6.65 7.58 -15.06 -0.11 -6.76 16 12 H 0.08 1.86 7.84 -52.48 -0.41 1.45 16 13 C 0.06 1.53 4.01 -17.43 -0.07 1.46 16 14 N -0.77 -20.46 11.49 55.49 0.64 -19.82 16 15 Si 0.91 19.30 29.62 -169.99 -5.04 14.26 16 16 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 17 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 18 H -0.27 -5.36 7.11 56.52 0.40 -4.95 16 19 C 0.09 1.88 6.43 -67.93 -0.44 1.44 16 20 C -0.16 -2.86 9.86 -26.69 -0.26 -3.13 16 21 C -0.21 -3.51 10.19 -26.69 -0.27 -3.78 16 22 C 0.04 0.83 9.09 -39.17 -0.36 0.47 16 23 C -0.16 -2.83 5.86 -104.98 -0.62 -3.45 16 24 C 0.53 8.38 7.91 34.61 0.27 8.65 16 25 O -0.52 -8.17 12.49 -19.24 -0.24 -8.41 16 26 O -0.51 -7.00 12.69 -40.54 -0.51 -7.52 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.81 6.42 -51.93 -0.33 0.48 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.10 1.42 5.95 -51.93 -0.31 1.11 16 31 H 0.07 0.74 7.99 -51.93 -0.41 0.32 16 32 H 0.13 1.54 8.02 -52.48 -0.42 1.11 16 33 H 0.14 2.24 7.60 -52.49 -0.40 1.84 16 34 H 0.28 7.13 8.32 -40.82 -0.34 6.79 16 35 H 0.12 2.34 7.31 -51.93 -0.38 1.96 16 36 H 0.11 2.04 7.13 -51.93 -0.37 1.67 16 37 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.09 1.58 8.08 -51.93 -0.42 1.16 16 40 H 0.15 3.06 7.16 -52.48 -0.38 2.68 16 41 H 0.41 3.40 9.11 45.56 0.42 3.82 16 LS Contribution 354.89 15.07 5.35 5.35 Total: -1.00 -31.15 354.89 -9.66 -40.81 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -4.25 Total: 10.58 kcal Atomic # 6 Polarization: -22.15 SS G_CDS: -3.19 Total: -25.34 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: 0.47 Total: -38.08 kcal Atomic # 8 Polarization: -66.00 SS G_CDS: -2.43 Total: -68.43 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.04 Total: 14.26 kcal Atomic # 16 Polarization: 61.44 SS G_CDS: -0.59 Total: 60.85 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.15 -9.66 -40.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871840542.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.100 kcal (2) G-P(sol) polarization free energy of solvation -31.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds