Wall clock time and date at job start Tue Mar 31 2020 22:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50697 * 109.47095 * 2 1 4 4 C 1.37974 * 120.07740 * 101.50707 * 3 2 1 5 5 C 1.38339 * 120.15236 * 180.02562 * 4 3 2 6 6 C 1.38391 * 120.30361 * 359.97438 * 5 4 3 7 7 S 1.76195 * 119.92808 * 179.97438 * 6 5 4 8 8 O 1.42101 * 106.40346 * 336.46730 * 7 6 5 9 9 O 1.42093 * 106.40655 * 203.54290 * 7 6 5 10 10 N 1.65608 * 107.21738 * 90.00503 * 7 6 5 11 11 C 1.36928 * 120.00153 * 90.00263 * 10 7 6 12 12 H 1.08006 * 119.99975 * 228.25982 * 11 10 7 13 13 C 1.38810 * 120.00428 * 48.25224 * 11 10 7 14 14 N 1.31620 * 119.99377 * 25.03372 * 13 11 10 15 15 Si 1.86795 * 120.00536 * 205.02792 * 13 11 10 16 16 H 1.48508 * 109.47045 * 90.00369 * 15 13 11 17 17 H 1.48495 * 109.47426 * 209.99980 * 15 13 11 18 18 H 1.48503 * 109.47224 * 330.00414 * 15 13 11 19 19 C 1.46497 * 119.99619 * 269.72652 * 10 7 6 20 20 C 1.53003 * 117.49979 * 193.25780 * 19 10 7 21 21 C 1.53006 * 117.49934 * 124.60246 * 19 10 7 22 22 C 1.37927 * 120.14763 * 0.26443 * 6 5 4 23 23 C 1.39605 * 120.07597 * 281.52546 * 3 2 1 24 24 C 1.47725 * 120.15101 * 0.02562 * 23 3 2 25 25 O 1.21468 * 119.99886 * 357.00607 * 24 23 3 26 26 O 1.34716 * 120.00007 * 177.00713 * 24 23 3 27 27 H 1.08999 * 109.46733 * 300.00258 * 1 2 3 28 28 H 1.09003 * 109.46720 * 59.99810 * 1 2 3 29 29 H 1.08995 * 109.46854 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47134 * 239.99576 * 2 1 3 31 31 H 1.09003 * 109.46720 * 120.00189 * 2 1 3 32 32 H 1.08004 * 119.92070 * 359.97438 * 4 3 2 33 33 H 1.07995 * 119.85206 * 179.97438 * 5 4 3 34 34 H 0.97006 * 120.00139 * 184.90949 * 14 13 11 35 35 H 1.08998 * 115.55367 * 338.93065 * 19 10 7 36 36 H 1.09001 * 117.49638 * 0.02562 * 20 19 10 37 37 H 1.08995 * 117.50087 * 145.02060 * 20 19 10 38 38 H 1.09001 * 117.50152 * 214.97965 * 21 19 10 39 39 H 1.09002 * 117.49348 * 359.97024 * 21 19 10 40 40 H 1.08008 * 120.07539 * 179.72308 * 22 6 5 41 41 H 0.96694 * 116.99418 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.4874 1.9933 1.1700 5 6 2.9484 3.2977 1.1718 6 6 2.9571 4.0369 0.0019 7 16 3.5458 5.6975 0.0158 8 8 3.4081 6.1610 1.3520 9 8 2.9454 6.3454 -1.0973 10 7 5.1715 5.6440 -0.2954 11 6 5.6241 5.7094 -1.5860 12 1 6.3578 4.9991 -1.9377 13 6 5.1398 6.6885 -2.4426 14 7 4.6619 7.8130 -1.9534 15 14 5.1666 6.4102 -4.2895 16 1 3.8974 5.7645 -4.7113 17 1 5.3133 7.7142 -4.9846 18 1 6.3102 5.5304 -4.6411 19 6 6.1256 5.5327 0.8107 20 6 7.6003 5.7980 0.5010 21 6 7.1197 4.3702 0.7720 22 6 2.5005 3.4785 -1.1737 23 6 2.0380 2.1609 -1.1837 24 6 1.5514 1.5548 -2.4400 25 8 1.1962 0.3934 -2.4563 26 8 1.5017 2.2903 -3.5676 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 2.4830 1.4221 2.0866 33 1 3.3031 3.7411 2.0904 34 1 4.2585 8.4669 -2.5456 35 1 5.7525 5.8435 1.7865 36 1 7.8605 6.0557 -0.5256 37 1 8.1974 6.2830 1.2732 38 1 7.4008 3.9165 1.7224 39 1 7.0633 3.6880 -0.0763 40 1 2.5037 4.0580 -2.0852 41 1 1.1765 1.8501 -4.3647 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871840542.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:46 Heat of formation + Delta-G solvation = -120.095969 kcal Electronic energy + Delta-G solvation = -28508.886940 eV Core-core repulsion = 24481.396428 eV Total energy + Delta-G solvation = -4027.490512 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.74554 -39.79687 -38.76980 -37.69749 -37.33965 -36.17876 -35.08136 -34.94951 -32.54511 -32.43649 -30.68207 -26.82189 -26.08048 -24.78657 -23.12462 -22.97945 -22.29382 -21.89994 -20.74742 -19.53101 -19.02787 -18.17634 -17.70747 -17.26592 -17.00820 -16.81678 -16.63498 -16.33688 -15.92748 -15.46395 -15.15277 -15.02341 -14.79872 -14.50542 -14.10012 -14.05353 -13.84911 -13.48954 -13.13794 -13.04464 -12.93814 -12.84052 -12.77036 -12.56467 -12.47202 -12.32746 -12.28894 -12.09991 -12.03356 -11.98672 -11.67379 -11.44695 -11.09441 -10.95967 -10.48290 -10.25646 -10.11693 -9.33519 -8.40110 -6.10601 -0.52358 -0.11012 0.11535 1.34824 1.48163 1.54990 1.60400 2.00088 2.31826 2.43162 2.82898 3.00402 3.23814 3.47160 3.54731 3.63439 3.86285 3.96854 4.17150 4.25444 4.31860 4.36344 4.37151 4.43245 4.47671 4.52407 4.67348 4.78459 4.86479 4.91579 4.98268 5.04047 5.06507 5.14919 5.25273 5.29542 5.41400 5.48300 5.55430 5.58285 5.72184 5.81905 6.29494 6.91171 7.02505 7.43596 8.62866 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.012136 B = 0.005352 C = 0.004402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.652339 B = 5230.798889 C = 6359.226223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.094 4.094 3 C 0.018 3.982 4 C -0.144 4.144 5 C 0.000 4.000 6 C -0.698 4.698 7 S 2.576 3.424 8 O -1.033 7.033 9 O -0.980 6.980 10 N -0.799 5.799 11 C -0.287 4.287 12 H 0.092 0.908 13 C 0.022 3.978 14 N -0.818 5.818 15 Si 0.960 3.040 16 H -0.277 1.277 17 H -0.279 1.279 18 H -0.245 1.245 19 C 0.053 3.947 20 C -0.159 4.159 21 C -0.180 4.180 22 C 0.025 3.975 23 C -0.172 4.172 24 C 0.532 3.468 25 O -0.515 6.515 26 O -0.512 6.512 27 H 0.057 0.943 28 H 0.037 0.963 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.177 0.823 33 H 0.147 0.853 34 H 0.276 0.724 35 H 0.118 0.882 36 H 0.091 0.909 37 H 0.111 0.889 38 H 0.118 0.882 39 H 0.087 0.913 40 H 0.130 0.870 41 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.100 -13.867 2.527 14.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.131 4.131 3 C 0.017 3.983 4 C -0.162 4.162 5 C -0.019 4.019 6 C -0.778 4.778 7 S 2.678 3.322 8 O -1.023 7.023 9 O -0.969 6.969 10 N -0.622 5.622 11 C -0.433 4.433 12 H 0.110 0.890 13 C -0.192 4.192 14 N -0.455 5.455 15 Si 0.783 3.217 16 H -0.202 1.202 17 H -0.205 1.205 18 H -0.168 1.168 19 C -0.055 4.055 20 C -0.198 4.198 21 C -0.220 4.220 22 C 0.006 3.994 23 C -0.174 4.174 24 C 0.378 3.622 25 O -0.407 6.407 26 O -0.326 6.326 27 H 0.076 0.924 28 H 0.056 0.944 29 H 0.095 0.905 30 H 0.110 0.890 31 H 0.118 0.882 32 H 0.195 0.805 33 H 0.165 0.835 34 H 0.086 0.914 35 H 0.135 0.865 36 H 0.109 0.891 37 H 0.129 0.871 38 H 0.136 0.864 39 H 0.105 0.895 40 H 0.148 0.852 41 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges -1.813 -13.113 3.149 13.607 hybrid contribution -0.606 -0.246 -1.622 1.749 sum -2.419 -13.360 1.527 13.662 Atomic orbital electron populations 1.21618 0.93721 1.02757 1.01071 1.20951 0.97179 0.89981 1.04949 1.20565 0.90220 0.96678 0.90841 1.21516 1.00874 0.94921 0.98923 1.21397 0.90332 0.93857 0.96300 1.32103 1.15758 1.30397 0.99582 1.09348 0.75093 0.75846 0.71885 1.93261 1.87381 1.81552 1.40133 1.93395 1.77701 1.72922 1.52858 1.52242 1.18356 1.81604 1.09980 1.19180 1.26277 1.11137 0.86673 0.89002 1.26440 0.95746 0.92320 1.04732 1.69979 1.30276 1.05541 1.39667 0.85428 0.79515 0.78462 0.78310 1.20226 1.20451 1.16813 1.21675 0.87965 1.05122 0.90734 1.23139 0.94599 0.98875 1.03218 1.23359 1.03640 0.91414 1.03557 1.21097 0.88081 0.93242 0.96996 1.19219 1.10142 0.95472 0.92537 1.20666 0.74083 0.83511 0.83905 1.90794 1.46262 1.17525 1.86124 1.84627 1.79332 1.47675 1.21005 0.92407 0.94412 0.90515 0.89014 0.88222 0.80547 0.83494 0.91384 0.86456 0.89071 0.87116 0.86367 0.89471 0.85228 0.70478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.86 9.40 71.98 0.68 -2.18 16 2 C -0.09 -2.08 5.34 29.85 0.16 -1.93 16 3 C 0.02 0.50 5.18 -19.60 -0.10 0.39 16 4 C -0.14 -3.83 9.66 22.23 0.21 -3.61 16 5 C 0.00 0.01 9.52 22.33 0.21 0.22 16 6 C -0.70 -28.72 5.97 22.23 0.13 -28.59 16 7 S 2.58 128.02 5.45 -56.49 -0.31 127.71 16 8 O -1.03 -53.97 16.02 -128.00 -2.05 -56.02 16 9 O -0.98 -55.43 13.24 -128.00 -1.70 -57.12 16 10 N -0.80 -37.71 3.07 -322.94 -0.99 -38.70 16 11 C -0.29 -13.96 7.58 84.03 0.64 -13.32 16 12 H 0.09 4.17 7.84 -2.91 -0.02 4.15 16 13 C 0.02 1.12 4.01 84.86 0.34 1.46 16 14 N -0.82 -45.78 11.49 21.65 0.25 -45.53 16 15 Si 0.96 40.45 29.62 68.60 2.03 42.48 16 16 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 17 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 18 H -0.25 -9.29 7.11 99.48 0.71 -8.58 16 19 C 0.05 2.11 6.43 45.00 0.29 2.40 16 20 C -0.16 -5.39 9.86 30.62 0.30 -5.09 16 21 C -0.18 -5.58 10.19 30.62 0.31 -5.26 16 22 C 0.03 1.01 9.09 22.54 0.20 1.22 16 23 C -0.17 -5.78 5.86 -20.10 -0.12 -5.90 16 24 C 0.53 16.20 7.91 70.33 0.56 16.75 16 25 O -0.52 -15.32 12.49 19.94 0.25 -15.07 16 26 O -0.51 -13.83 12.69 -56.26 -0.71 -14.54 16 27 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.04 0.95 6.42 -2.39 -0.02 0.94 16 29 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.09 2.28 5.95 -2.39 -0.01 2.26 16 31 H 0.10 1.61 7.99 -2.39 -0.02 1.59 16 32 H 0.18 3.08 8.02 -2.91 -0.02 3.06 16 33 H 0.15 4.57 7.60 -2.91 -0.02 4.55 16 34 H 0.28 14.88 8.32 -92.70 -0.77 14.11 16 35 H 0.12 4.61 7.31 -2.39 -0.02 4.60 16 36 H 0.09 3.42 7.13 -2.39 -0.02 3.40 16 37 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 38 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 39 H 0.09 2.81 8.08 -2.39 -0.02 2.79 16 40 H 0.13 5.58 7.16 -2.91 -0.02 5.56 16 41 H 0.43 6.63 9.11 -74.06 -0.67 5.95 16 Total: -1.00 -70.59 354.89 1.00 -69.60 By element: Atomic # 1 Polarization: 30.25 SS G_CDS: 0.41 Total: 30.65 kcal Atomic # 6 Polarization: -47.27 SS G_CDS: 3.82 Total: -43.45 kcal Atomic # 7 Polarization: -83.49 SS G_CDS: -0.74 Total: -84.23 kcal Atomic # 8 Polarization: -138.55 SS G_CDS: -4.21 Total: -142.76 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 2.03 Total: 42.48 kcal Atomic # 16 Polarization: 128.02 SS G_CDS: -0.31 Total: 127.71 kcal Total: -70.59 1.00 -69.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871840542.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.498 kcal (2) G-P(sol) polarization free energy of solvation -70.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds