Wall clock time and date at job start Tue Mar 31 2020 22:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38389 * 119.92344 * 2 1 4 4 C 1.38351 * 120.29939 * 179.72212 * 3 2 1 5 5 S 1.76203 * 119.92307 * 180.27370 * 4 3 2 6 6 O 1.42100 * 106.40267 * 203.53876 * 5 4 3 7 7 O 1.42096 * 106.40260 * 336.46209 * 5 4 3 8 8 N 1.65597 * 107.21382 * 90.00338 * 5 4 3 9 9 C 1.47070 * 136.05804 * 269.62666 * 8 5 4 10 10 C 1.53752 * 87.88997 * 152.96655 * 9 8 5 11 11 C 1.50701 * 114.26547 * 139.79045 * 10 9 8 12 12 H 1.07993 * 120.00325 * 266.47250 * 11 10 9 13 13 C 1.37882 * 119.99749 * 86.47944 * 11 10 9 14 14 N 1.31512 * 119.99913 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99853 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47213 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47432 * 119.99501 * 15 13 11 18 18 H 1.48504 * 109.47052 * 239.99769 * 15 13 11 19 19 C 1.47069 * 136.05872 * 90.00175 * 8 5 4 20 20 C 1.37963 * 120.15023 * 0.29682 * 4 3 2 21 21 C 1.39610 * 119.84810 * 359.97438 * 20 4 3 22 22 C 1.47731 * 120.14750 * 179.97438 * 21 20 4 23 23 O 1.21475 * 119.99639 * 173.82196 * 22 21 20 24 24 O 1.34707 * 120.00131 * 353.82217 * 22 21 20 25 25 C 1.37927 * 119.92343 * 180.27347 * 2 1 3 26 26 C 1.50695 * 120.07667 * 0.02562 * 25 2 1 27 27 H 1.09005 * 109.46882 * 89.99706 * 1 2 3 28 28 H 1.08996 * 109.47278 * 209.99923 * 1 2 3 29 29 H 1.08999 * 109.46803 * 330.00429 * 1 2 3 30 30 H 1.07994 * 119.85347 * 359.97438 * 3 2 1 31 31 H 1.09007 * 113.46811 * 267.70282 * 9 8 5 32 32 H 1.08996 * 113.46584 * 38.13104 * 9 8 5 33 33 H 1.08999 * 114.39398 * 272.67585 * 10 9 8 34 34 H 0.97007 * 119.99878 * 180.02562 * 14 13 11 35 35 H 1.08993 * 113.46916 * 321.85743 * 19 8 5 36 36 H 1.09004 * 113.46794 * 92.30205 * 19 8 5 37 37 H 1.08002 * 120.07414 * 179.97438 * 20 4 3 38 38 H 0.96697 * 116.99928 * 179.97438 * 24 22 21 39 39 H 1.09000 * 109.47434 * 263.74620 * 26 25 2 40 40 H 1.09003 * 109.47511 * 23.74488 * 26 25 2 41 41 H 1.09001 * 109.47085 * 143.74231 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1994 0.0000 4 6 3.5808 1.2085 0.0058 5 16 4.4497 2.7414 0.0130 6 8 5.7371 2.4754 -0.5266 7 8 3.5627 3.7080 -0.5328 8 7 4.6849 3.1639 1.5968 9 6 3.9506 3.9429 2.6052 10 6 4.6342 3.0855 3.6829 11 6 5.0714 3.8558 4.9021 12 1 6.0775 4.2435 4.9638 13 6 4.1870 4.0656 5.9389 14 7 2.9617 3.5938 5.8635 15 14 4.7292 5.0198 7.4504 16 1 6.1446 5.4391 7.2897 17 1 3.8717 6.2215 7.6111 18 1 4.6024 4.1569 8.6524 19 6 5.7231 2.9309 2.6121 20 6 4.2816 0.0201 0.0054 21 6 3.5915 -1.1935 -0.0003 22 6 4.3352 -2.4700 -0.0012 23 8 3.7369 -3.5216 0.1070 24 8 5.6768 -2.4677 -0.1222 25 6 2.1951 -1.1954 -0.0057 26 6 1.4416 -2.5004 -0.0125 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6538 2.1326 -0.0004 31 1 4.2403 4.9933 2.6379 32 1 2.8704 3.8044 2.5587 33 1 4.1089 2.1610 3.9228 34 1 2.3393 3.7417 6.5928 35 1 6.1530 1.9302 2.5716 36 1 6.4801 3.7144 2.6466 37 1 5.3616 0.0286 0.0095 38 1 6.1195 -3.3274 -0.1173 39 1 1.3564 -2.8762 1.0071 40 1 0.4454 -2.3428 -0.4259 41 1 1.9778 -3.2264 -0.6237 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871982887.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:06 Heat of formation + Delta-G solvation = -104.095737 kcal Electronic energy + Delta-G solvation = -27486.752064 eV Core-core repulsion = 23459.955374 eV Total energy + Delta-G solvation = -4026.796690 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.86088 -39.17137 -38.27708 -36.91981 -36.39849 -35.56553 -33.78439 -32.64952 -32.56791 -28.39791 -28.31729 -26.92166 -25.00853 -24.62095 -24.55701 -21.83048 -21.37496 -19.87454 -18.39665 -18.20904 -17.71540 -16.92408 -16.49312 -16.37730 -16.13509 -15.91036 -15.40788 -15.13981 -14.61457 -14.32845 -14.05989 -13.79508 -13.36716 -13.12560 -13.00840 -12.89826 -12.80609 -12.48183 -12.24573 -12.02008 -11.99156 -11.83624 -11.73595 -11.71874 -11.69125 -11.52360 -11.43684 -11.01744 -10.78293 -10.56822 -10.37574 -10.29731 -9.43715 -9.24865 -9.10428 -8.98994 -8.61803 -8.27337 -6.18327 -4.22807 0.33327 0.61386 0.83708 2.21567 2.76363 3.15812 3.23122 3.32328 3.35552 3.48382 4.04129 4.25128 4.33375 4.53162 4.55109 4.70398 4.94323 4.97936 5.05097 5.14054 5.33293 5.41242 5.45791 5.53340 5.57698 5.69903 5.76939 5.81993 5.87575 6.00815 6.12908 6.17345 6.23626 6.29975 6.35739 6.45533 6.54256 6.67587 6.80045 7.45740 7.60011 7.66376 7.79901 8.19533 8.81215 9.43430 10.91377 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.011629 B = 0.003628 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.275008 B = 7715.560290 C = 8074.742612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.121 4.121 3 C 0.023 3.977 4 C -0.686 4.686 5 S 2.712 3.288 6 O -0.964 6.964 7 O -0.962 6.962 8 N -1.047 6.047 9 C 0.131 3.869 10 C 0.034 3.966 11 C -0.515 4.515 12 H 0.065 0.935 13 C 0.068 3.932 14 N -0.886 5.886 15 Si 0.894 3.106 16 H -0.271 1.271 17 H -0.283 1.283 18 H -0.284 1.284 19 C 0.126 3.874 20 C 0.039 3.961 21 C -0.155 4.155 22 C 0.532 3.468 23 O -0.510 6.510 24 O -0.508 6.508 25 C 0.029 3.971 26 C -0.133 4.133 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.147 0.853 31 H 0.075 0.925 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.263 0.737 35 H 0.056 0.944 36 H 0.076 0.924 37 H 0.154 0.846 38 H 0.415 0.585 39 H 0.085 0.915 40 H 0.070 0.930 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.208 -10.196 -11.419 15.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.122 4.122 3 C 0.004 3.996 4 C -0.770 4.770 5 S 2.804 3.196 6 O -0.954 6.954 7 O -0.952 6.952 8 N -0.889 5.889 9 C 0.007 3.993 10 C 0.013 3.987 11 C -0.554 4.554 12 H 0.083 0.917 13 C -0.136 4.136 14 N -0.523 5.523 15 Si 0.722 3.278 16 H -0.195 1.195 17 H -0.209 1.209 18 H -0.210 1.210 19 C 0.002 3.998 20 C 0.020 3.980 21 C -0.157 4.157 22 C 0.377 3.623 23 O -0.401 6.401 24 O -0.320 6.320 25 C 0.029 3.971 26 C -0.188 4.188 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.165 0.835 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.171 0.829 38 H 0.274 0.726 39 H 0.104 0.896 40 H 0.089 0.911 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.519 -9.729 -12.305 15.887 hybrid contribution 0.145 -0.624 1.063 1.241 sum -2.374 -10.353 -11.242 15.466 Atomic orbital electron populations 1.20858 0.89690 1.03849 1.02800 1.19836 0.97018 0.91822 1.03481 1.21110 0.92018 0.99027 0.87413 1.31322 1.06292 1.21183 1.18248 1.01192 0.73322 0.73336 0.71769 1.93540 1.39019 1.86002 1.76860 1.93541 1.67306 1.57839 1.76555 1.59874 1.35605 1.66080 1.27390 1.23147 0.95977 0.96095 0.84105 1.20537 0.91207 0.96469 0.90512 1.21021 0.98582 1.34916 1.00926 0.91703 1.25029 0.94889 0.95313 0.98324 1.69957 1.04806 1.44777 1.32782 0.86501 0.78956 0.79692 0.82646 1.19540 1.20928 1.20976 1.22862 0.92144 0.99548 0.85280 1.21169 1.00743 0.89830 0.86255 1.18897 0.92821 0.90870 1.13107 1.20721 0.80415 0.89037 0.72107 1.90837 1.69017 1.33739 1.46492 1.84591 1.21233 1.41098 1.85092 1.20115 0.91540 0.96263 0.89213 1.21292 0.99676 0.93611 1.04248 0.90741 0.90698 0.90559 0.83501 0.90703 0.92372 0.91393 0.92733 0.92599 0.90571 0.82868 0.72581 0.89623 0.91098 0.88584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.07 9.18 36.01 0.33 -0.74 16 2 C -0.12 -1.51 5.87 -104.68 -0.61 -2.13 16 3 C 0.02 0.33 9.17 -39.48 -0.36 -0.03 16 4 C -0.69 -10.64 5.97 -39.64 -0.24 -10.87 16 5 S 2.71 47.59 6.27 -107.50 -0.67 46.91 16 6 O -0.96 -18.29 17.27 -57.17 -0.99 -19.28 16 7 O -0.96 -18.51 17.27 -57.17 -0.99 -19.50 16 8 N -1.05 -19.68 4.23 -125.01 -0.53 -20.21 16 9 C 0.13 2.72 8.31 -8.37 -0.07 2.65 16 10 C 0.03 0.76 3.79 -91.12 -0.35 0.41 16 11 C -0.52 -12.74 8.83 -34.44 -0.30 -13.05 16 12 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 13 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 14 N -0.89 -23.68 13.26 55.43 0.74 -22.95 16 15 Si 0.89 19.77 29.54 -169.99 -5.02 14.75 16 16 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 17 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 18 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 19 C 0.13 2.41 8.29 -8.50 -0.07 2.34 16 20 C 0.04 0.58 9.09 -39.17 -0.36 0.22 16 21 C -0.15 -2.13 5.87 -104.98 -0.62 -2.75 16 22 C 0.53 6.68 8.20 34.61 0.28 6.96 16 23 O -0.51 -6.91 14.13 -19.25 -0.27 -7.19 16 24 O -0.51 -5.07 12.70 -40.51 -0.51 -5.59 16 25 C 0.03 0.37 5.91 -104.21 -0.62 -0.24 16 26 C -0.13 -1.39 8.08 36.00 0.29 -1.10 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.60 6.58 -51.93 -0.34 0.26 16 29 H 0.08 0.68 8.08 -51.93 -0.42 0.26 16 30 H 0.15 1.92 7.60 -52.49 -0.40 1.52 16 31 H 0.07 1.54 8.10 -51.93 -0.42 1.12 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.07 1.64 8.11 -51.93 -0.42 1.22 16 34 H 0.26 6.70 8.31 -40.82 -0.34 6.37 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 37 H 0.15 2.12 7.18 -52.49 -0.38 1.74 16 38 H 0.42 2.03 9.11 45.56 0.42 2.45 16 39 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.07 0.58 6.36 -51.93 -0.33 0.25 16 41 H 0.10 1.08 5.85 -51.93 -0.30 0.77 16 LS Contribution 361.79 15.07 5.45 5.45 Total: -1.00 -31.66 361.79 -9.84 -41.49 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -4.25 Total: 2.76 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: -2.78 Total: -16.67 kcal Atomic # 7 Polarization: -43.36 SS G_CDS: 0.21 Total: -43.15 kcal Atomic # 8 Polarization: -48.78 SS G_CDS: -2.76 Total: -51.55 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Atomic # 16 Polarization: 47.59 SS G_CDS: -0.67 Total: 46.91 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.66 -9.84 -41.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871982887.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.603 kcal (2) G-P(sol) polarization free energy of solvation -31.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds