Wall clock time and date at job start Tue Mar 31 2020 22:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38389 * 119.92344 * 2 1 4 4 C 1.38351 * 120.29939 * 179.72212 * 3 2 1 5 5 S 1.76203 * 119.92307 * 180.27370 * 4 3 2 6 6 O 1.42100 * 106.40267 * 203.53876 * 5 4 3 7 7 O 1.42096 * 106.40260 * 336.46209 * 5 4 3 8 8 N 1.65597 * 107.21382 * 90.00338 * 5 4 3 9 9 C 1.47070 * 136.05804 * 269.62666 * 8 5 4 10 10 C 1.53752 * 87.88997 * 152.96655 * 9 8 5 11 11 C 1.50701 * 114.26547 * 139.79045 * 10 9 8 12 12 H 1.07993 * 120.00325 * 266.47250 * 11 10 9 13 13 C 1.37882 * 119.99749 * 86.47944 * 11 10 9 14 14 N 1.31512 * 119.99913 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99853 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47213 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47432 * 119.99501 * 15 13 11 18 18 H 1.48504 * 109.47052 * 239.99769 * 15 13 11 19 19 C 1.47069 * 136.05872 * 90.00175 * 8 5 4 20 20 C 1.37963 * 120.15023 * 0.29682 * 4 3 2 21 21 C 1.39610 * 119.84810 * 359.97438 * 20 4 3 22 22 C 1.47731 * 120.14750 * 179.97438 * 21 20 4 23 23 O 1.21475 * 119.99639 * 173.82196 * 22 21 20 24 24 O 1.34707 * 120.00131 * 353.82217 * 22 21 20 25 25 C 1.37927 * 119.92343 * 180.27347 * 2 1 3 26 26 C 1.50695 * 120.07667 * 0.02562 * 25 2 1 27 27 H 1.09005 * 109.46882 * 89.99706 * 1 2 3 28 28 H 1.08996 * 109.47278 * 209.99923 * 1 2 3 29 29 H 1.08999 * 109.46803 * 330.00429 * 1 2 3 30 30 H 1.07994 * 119.85347 * 359.97438 * 3 2 1 31 31 H 1.09007 * 113.46811 * 267.70282 * 9 8 5 32 32 H 1.08996 * 113.46584 * 38.13104 * 9 8 5 33 33 H 1.08999 * 114.39398 * 272.67585 * 10 9 8 34 34 H 0.97007 * 119.99878 * 180.02562 * 14 13 11 35 35 H 1.08993 * 113.46916 * 321.85743 * 19 8 5 36 36 H 1.09004 * 113.46794 * 92.30205 * 19 8 5 37 37 H 1.08002 * 120.07414 * 179.97438 * 20 4 3 38 38 H 0.96697 * 116.99928 * 179.97438 * 24 22 21 39 39 H 1.09000 * 109.47434 * 263.74620 * 26 25 2 40 40 H 1.09003 * 109.47511 * 23.74488 * 26 25 2 41 41 H 1.09001 * 109.47085 * 143.74231 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1994 0.0000 4 6 3.5808 1.2085 0.0058 5 16 4.4497 2.7414 0.0130 6 8 5.7371 2.4754 -0.5266 7 8 3.5627 3.7080 -0.5328 8 7 4.6849 3.1639 1.5968 9 6 3.9506 3.9429 2.6052 10 6 4.6342 3.0855 3.6829 11 6 5.0714 3.8558 4.9021 12 1 6.0775 4.2435 4.9638 13 6 4.1870 4.0656 5.9389 14 7 2.9617 3.5938 5.8635 15 14 4.7292 5.0198 7.4504 16 1 6.1446 5.4391 7.2897 17 1 3.8717 6.2215 7.6111 18 1 4.6024 4.1569 8.6524 19 6 5.7231 2.9309 2.6121 20 6 4.2816 0.0201 0.0054 21 6 3.5915 -1.1935 -0.0003 22 6 4.3352 -2.4700 -0.0012 23 8 3.7369 -3.5216 0.1070 24 8 5.6768 -2.4677 -0.1222 25 6 2.1951 -1.1954 -0.0057 26 6 1.4416 -2.5004 -0.0125 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6538 2.1326 -0.0004 31 1 4.2403 4.9933 2.6379 32 1 2.8704 3.8044 2.5587 33 1 4.1089 2.1610 3.9228 34 1 2.3393 3.7417 6.5928 35 1 6.1530 1.9302 2.5716 36 1 6.4801 3.7144 2.6466 37 1 5.3616 0.0286 0.0095 38 1 6.1195 -3.3274 -0.1173 39 1 1.3564 -2.8762 1.0071 40 1 0.4454 -2.3428 -0.4259 41 1 1.9778 -3.2264 -0.6237 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871982887.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:05 Heat of formation + Delta-G solvation = -125.468157 kcal Electronic energy + Delta-G solvation = -27487.678842 eV Core-core repulsion = 23459.955374 eV Total energy + Delta-G solvation = -4027.723468 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.83052 -40.14750 -39.91146 -38.40057 -37.29750 -37.05208 -34.76896 -34.55524 -33.56327 -30.09891 -29.24878 -27.85327 -26.60865 -26.38394 -25.59866 -22.94976 -22.30836 -21.54516 -19.75366 -19.19876 -19.03744 -18.47250 -18.13279 -17.53348 -17.18910 -16.88738 -16.58287 -16.50710 -16.34108 -15.70066 -15.20154 -14.75087 -14.69664 -14.53851 -14.31769 -13.76730 -13.69405 -13.51879 -13.45152 -13.34345 -13.29076 -13.28578 -13.18995 -13.09326 -13.02164 -12.82089 -12.78472 -12.58742 -12.29460 -12.15834 -11.85014 -11.30928 -10.99048 -10.94653 -10.51214 -10.45478 -9.99849 -9.85899 -8.11532 -6.20641 -0.85175 -0.62179 -0.28823 1.21661 1.48066 1.52286 1.62021 1.87224 1.90806 2.28562 2.49541 2.66112 2.98770 3.21098 3.44729 3.58664 3.72261 3.89055 4.04267 4.11244 4.16014 4.41458 4.43141 4.55619 4.61426 4.63571 4.65526 4.69812 4.76603 4.82183 4.85574 4.97191 5.04994 5.08445 5.12170 5.13553 5.25929 5.45159 5.62164 5.66855 5.87212 5.90935 6.32834 6.87163 6.89051 7.48360 8.98494 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.011629 B = 0.003628 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.275008 B = 7715.560290 C = 8074.742612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.117 4.117 3 C 0.007 3.993 4 C -0.694 4.694 5 S 2.728 3.272 6 O -0.978 6.978 7 O -0.981 6.981 8 N -1.048 6.048 9 C 0.136 3.864 10 C 0.021 3.979 11 C -0.524 4.524 12 H 0.068 0.932 13 C 0.021 3.979 14 N -0.920 5.920 15 Si 0.954 3.046 16 H -0.263 1.263 17 H -0.284 1.284 18 H -0.285 1.285 19 C 0.132 3.868 20 C 0.029 3.971 21 C -0.166 4.166 22 C 0.536 3.464 23 O -0.522 6.522 24 O -0.506 6.506 25 C 0.026 3.974 26 C -0.128 4.128 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.153 0.847 31 H 0.074 0.926 32 H 0.054 0.946 33 H 0.045 0.955 34 H 0.263 0.737 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.157 0.843 38 H 0.437 0.563 39 H 0.087 0.913 40 H 0.097 0.903 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.409 -11.112 -11.796 16.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.118 4.118 3 C -0.013 4.013 4 C -0.782 4.782 5 S 2.823 3.177 6 O -0.969 6.969 7 O -0.972 6.972 8 N -0.889 5.889 9 C 0.010 3.990 10 C 0.000 4.000 11 C -0.563 4.563 12 H 0.086 0.914 13 C -0.179 4.179 14 N -0.558 5.558 15 Si 0.780 3.220 16 H -0.187 1.187 17 H -0.210 1.210 18 H -0.211 1.211 19 C 0.008 3.992 20 C 0.009 3.991 21 C -0.168 4.168 22 C 0.381 3.619 23 O -0.414 6.414 24 O -0.320 6.320 25 C 0.026 3.974 26 C -0.184 4.184 27 H 0.113 0.887 28 H 0.109 0.891 29 H 0.097 0.903 30 H 0.170 0.830 31 H 0.092 0.908 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.103 0.897 37 H 0.174 0.826 38 H 0.300 0.700 39 H 0.105 0.895 40 H 0.115 0.885 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.661 -10.620 -12.682 16.754 hybrid contribution 0.209 -0.457 1.105 1.214 sum -2.452 -11.077 -11.577 16.209 Atomic orbital electron populations 1.20990 0.87169 1.04801 1.04398 1.20207 0.98810 0.90972 1.01854 1.21333 0.91674 1.00228 0.88041 1.30882 1.06843 1.19932 1.20522 1.00480 0.72828 0.73517 0.70846 1.93514 1.40152 1.86392 1.76857 1.93510 1.67589 1.59381 1.76716 1.59785 1.35239 1.66280 1.27556 1.22903 0.95771 0.95943 0.84350 1.20442 0.92961 0.95624 0.91008 1.21370 0.98646 1.34490 1.01807 0.91387 1.25727 0.94957 0.96307 1.00954 1.70061 1.05791 1.46364 1.33609 0.85571 0.78777 0.78260 0.79408 1.18729 1.20981 1.21085 1.22792 0.91549 1.01081 0.83811 1.21246 1.01035 0.90006 0.86806 1.19153 0.93661 0.91115 1.12896 1.20515 0.81077 0.88359 0.71914 1.90835 1.69497 1.33892 1.47184 1.84547 1.20046 1.43006 1.84434 1.20503 0.91470 0.97417 0.88041 1.21320 1.00660 0.92077 1.04335 0.88684 0.89125 0.90292 0.82964 0.90767 0.92766 0.93709 0.92846 0.90625 0.89685 0.82559 0.70028 0.89484 0.88451 0.89156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.86 9.18 71.24 0.65 -1.21 16 2 C -0.12 -2.75 5.87 -19.90 -0.12 -2.87 16 3 C 0.01 0.18 9.17 22.33 0.20 0.39 16 4 C -0.69 -21.33 5.97 22.23 0.13 -21.20 16 5 S 2.73 95.52 6.27 -56.49 -0.35 95.17 16 6 O -0.98 -36.79 17.27 -128.00 -2.21 -39.00 16 7 O -0.98 -37.82 17.27 -128.00 -2.21 -40.03 16 8 N -1.05 -39.33 4.23 -549.43 -2.32 -41.66 16 9 C 0.14 5.69 8.31 83.26 0.69 6.38 16 10 C 0.02 0.94 3.79 -11.12 -0.04 0.90 16 11 C -0.52 -25.95 8.83 25.60 0.23 -25.73 16 12 H 0.07 3.24 7.81 -2.91 -0.02 3.22 16 13 C 0.02 1.05 5.46 84.66 0.46 1.51 16 14 N -0.92 -49.80 13.26 21.45 0.28 -49.52 16 15 Si 0.95 40.53 29.54 68.60 2.03 42.55 16 16 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 17 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 18 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 19 C 0.13 4.97 8.29 83.18 0.69 5.66 16 20 C 0.03 0.82 9.09 22.54 0.20 1.03 16 21 C -0.17 -4.39 5.87 -20.10 -0.12 -4.51 16 22 C 0.54 12.73 8.20 70.33 0.58 13.31 16 23 O -0.52 -13.35 14.13 19.92 0.28 -13.07 16 24 O -0.51 -9.27 12.70 -56.17 -0.71 -9.99 16 25 C 0.03 0.63 5.91 -19.60 -0.12 0.51 16 26 C -0.13 -2.39 8.08 71.23 0.58 -1.82 16 27 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 28 H 0.09 1.17 6.58 -2.39 -0.02 1.15 16 29 H 0.08 1.24 8.08 -2.39 -0.02 1.22 16 30 H 0.15 3.94 7.60 -2.91 -0.02 3.92 16 31 H 0.07 3.09 8.10 -2.38 -0.02 3.07 16 32 H 0.05 2.27 8.14 -2.39 -0.02 2.26 16 33 H 0.04 2.22 8.11 -2.39 -0.02 2.20 16 34 H 0.26 13.56 8.31 -92.70 -0.77 12.79 16 35 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 36 H 0.09 3.04 8.10 -2.38 -0.02 3.02 16 37 H 0.16 4.26 7.18 -2.91 -0.02 4.24 16 38 H 0.44 3.41 9.11 -74.06 -0.67 2.73 16 39 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.10 1.28 6.36 -2.39 -0.02 1.26 16 41 H 0.09 1.84 5.85 -2.39 -0.01 1.83 16 Total: -1.00 -66.90 361.79 -0.79 -67.69 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: 0.41 Total: 15.49 kcal Atomic # 6 Polarization: -31.67 SS G_CDS: 4.03 Total: -27.64 kcal Atomic # 7 Polarization: -89.13 SS G_CDS: -2.04 Total: -91.17 kcal Atomic # 8 Polarization: -97.23 SS G_CDS: -4.85 Total: -102.09 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 2.03 Total: 42.55 kcal Atomic # 16 Polarization: 95.52 SS G_CDS: -0.35 Total: 95.17 kcal Total: -66.90 -0.79 -67.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871982887.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.780 kcal (2) G-P(sol) polarization free energy of solvation -66.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds