Wall clock time and date at job start Tue Mar 31 2020 22:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37967 * 120.07298 * 2 1 4 4 C 1.38349 * 120.14660 * 180.26944 * 3 2 1 5 5 C 1.38390 * 120.30242 * 0.02562 * 4 3 2 6 6 S 1.76199 * 119.92195 * 180.02562 * 5 4 3 7 7 O 1.42094 * 106.40500 * 356.79255 * 6 5 4 8 8 O 1.42101 * 106.40240 * 129.71242 * 6 5 4 9 9 N 1.65597 * 107.21880 * 243.25196 * 6 5 4 10 10 C 1.47073 * 136.05796 * 263.26724 * 9 6 5 11 11 C 1.53757 * 87.88938 * 152.95980 * 10 9 6 12 12 C 1.50696 * 114.26354 * 139.78962 * 11 10 9 13 13 H 1.07998 * 120.00198 * 266.47179 * 12 11 10 14 14 C 1.37878 * 120.00029 * 86.47647 * 12 11 10 15 15 N 1.31514 * 120.00332 * 179.97438 * 14 12 11 16 16 Si 1.86807 * 119.99805 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.46874 * 90.00106 * 16 14 12 18 18 H 1.48499 * 109.47145 * 209.99850 * 16 14 12 19 19 H 1.48492 * 109.47125 * 330.00000 * 16 14 12 20 20 C 1.47067 * 136.05905 * 83.63459 * 9 6 5 21 21 C 1.37918 * 120.15278 * 359.97438 * 5 4 3 22 22 C 1.50697 * 120.07894 * 180.02562 * 21 5 4 23 23 C 1.39606 * 120.07609 * 180.26779 * 2 1 3 24 24 C 1.47730 * 120.14924 * 359.71511 * 23 2 1 25 25 O 1.21464 * 120.00135 * 89.99293 * 24 23 2 26 26 O 1.34716 * 119.99504 * 269.99319 * 24 23 2 27 27 H 1.08993 * 109.47671 * 269.72486 * 1 2 3 28 28 H 1.09001 * 109.47122 * 29.73270 * 1 2 3 29 29 H 1.09006 * 109.46983 * 149.72610 * 1 2 3 30 30 H 1.07996 * 119.92525 * 0.27327 * 3 2 1 31 31 H 1.07996 * 119.84802 * 179.97438 * 4 3 2 32 32 H 1.09004 * 113.46546 * 267.69537 * 10 9 6 33 33 H 1.09003 * 113.46782 * 38.12644 * 10 9 6 34 34 H 1.08991 * 114.39187 * 272.67730 * 11 10 9 35 35 H 0.96995 * 119.99978 * 180.02562 * 15 14 12 36 36 H 1.09003 * 113.46350 * 321.86254 * 20 9 6 37 37 H 1.08995 * 113.46912 * 92.24434 * 20 9 6 38 38 H 1.09006 * 109.47591 * 264.79890 * 22 21 5 39 39 H 1.09000 * 109.47100 * 24.79456 * 22 21 5 40 40 H 1.08994 * 109.47711 * 144.79908 * 22 21 5 41 41 H 0.96692 * 116.99835 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1939 0.0000 4 6 3.5818 1.1957 -0.0056 5 6 4.2816 0.0018 -0.0118 6 16 6.0436 0.0158 -0.0183 7 8 6.4338 1.3801 -0.0918 8 8 6.4556 -0.8552 1.0262 9 7 6.5342 -0.6879 -1.4347 10 6 6.9710 -2.0276 -1.8559 11 6 6.4549 -1.6909 -3.2646 12 6 7.3422 -2.1763 -4.3817 13 1 8.0921 -1.5209 -4.7993 14 6 7.1967 -3.4572 -4.8707 15 7 7.9707 -3.8808 -5.8459 16 14 5.8999 -4.5912 -4.1479 17 1 4.6273 -4.4276 -4.8954 18 1 6.3589 -5.9994 -4.2543 19 1 5.6828 -4.2479 -2.7196 20 6 6.7310 -0.2467 -2.8238 21 6 3.6031 -1.1989 -0.0119 22 6 4.3668 -2.4980 -0.0181 23 6 2.2067 -1.2081 -0.0056 24 6 1.4731 -2.4904 -0.0053 25 8 1.1668 -3.0152 -1.0570 26 8 1.1438 -3.0776 1.1616 27 1 -0.3634 -0.0049 1.0276 28 1 -0.3633 0.8924 -0.5097 29 1 -0.3633 -0.8876 -0.5181 30 1 1.6584 2.1292 0.0045 31 1 4.1181 2.1331 -0.0060 32 1 8.0513 -2.1660 -1.8110 33 1 6.4217 -2.8354 -1.3722 34 1 5.4003 -1.9159 -3.4232 35 1 7.8680 -4.7818 -6.1901 36 1 5.9770 0.4628 -3.1648 37 1 7.7477 0.0854 -3.0338 38 1 4.4665 -2.8561 -1.0428 39 1 5.3569 -2.3394 0.4093 40 1 3.8295 -3.2382 0.5747 41 1 0.6637 -3.9154 1.1113 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871982929.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:52 Heat of formation + Delta-G solvation = -121.857512 kcal Electronic energy + Delta-G solvation = -28321.161112 eV Core-core repulsion = 24293.594214 eV Total energy + Delta-G solvation = -4027.566899 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.92001 -40.19498 -40.05808 -38.53136 -37.24744 -37.10225 -35.08702 -34.60271 -33.56429 -30.63384 -29.30553 -28.30905 -26.74698 -26.31099 -25.55632 -22.82055 -22.30268 -21.38445 -20.03258 -19.50326 -19.17773 -18.79779 -18.49746 -17.87729 -17.24295 -16.88675 -16.52075 -16.26760 -15.83508 -15.69856 -15.36443 -15.01894 -14.91555 -14.60439 -14.47043 -14.37445 -14.16920 -13.95328 -13.49070 -13.44319 -13.42288 -13.34305 -13.31377 -13.03251 -12.86468 -12.75501 -12.74644 -12.66033 -12.19650 -12.01406 -11.83328 -11.75842 -11.25304 -11.12329 -10.63601 -10.39807 -10.09940 -9.97401 -8.25627 -6.30050 -0.86391 -0.47731 -0.17649 0.81077 1.38170 1.42536 1.49166 1.68193 1.90434 2.14984 2.37934 2.58870 3.00027 3.11997 3.25471 3.50787 3.60739 3.93971 3.99200 4.04529 4.11797 4.14991 4.30189 4.31660 4.40314 4.47394 4.51110 4.60833 4.69228 4.73409 4.81372 4.83276 4.87597 4.91600 5.00621 5.04700 5.10255 5.30949 5.42410 5.53881 5.63578 5.76811 6.34315 6.73869 6.77454 7.36476 8.89933 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.010941 B = 0.005236 C = 0.004070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2558.596324 B = 5346.667258 C = 6877.817926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.012 3.988 3 C -0.138 4.138 4 C 0.002 3.998 5 C -0.694 4.694 6 S 2.727 3.273 7 O -0.975 6.975 8 O -0.977 6.977 9 N -1.048 6.048 10 C 0.115 3.885 11 C -0.018 4.018 12 C -0.505 4.505 13 H 0.048 0.952 14 C 0.025 3.975 15 N -0.943 5.943 16 Si 0.922 3.078 17 H -0.277 1.277 18 H -0.289 1.289 19 H -0.231 1.231 20 C 0.145 3.855 21 C 0.055 3.945 22 C -0.186 4.186 23 C -0.160 4.160 24 C 0.547 3.453 25 O -0.529 6.529 26 O -0.498 6.498 27 H 0.107 0.893 28 H 0.109 0.891 29 H 0.060 0.940 30 H 0.185 0.815 31 H 0.166 0.834 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.266 0.734 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.558 7.798 15.835 24.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.011 3.989 3 C -0.156 4.156 4 C -0.017 4.017 5 C -0.782 4.782 6 S 2.823 3.177 7 O -0.966 6.966 8 O -0.968 6.968 9 N -0.888 5.888 10 C -0.010 4.010 11 C -0.040 4.040 12 C -0.544 4.544 13 H 0.066 0.934 14 C -0.174 4.174 15 N -0.583 5.583 16 Si 0.747 3.253 17 H -0.203 1.203 18 H -0.216 1.216 19 H -0.153 1.153 20 C 0.020 3.980 21 C 0.054 3.946 22 C -0.242 4.242 23 C -0.161 4.161 24 C 0.389 3.611 25 O -0.419 6.419 26 O -0.312 6.312 27 H 0.125 0.875 28 H 0.127 0.873 29 H 0.079 0.921 30 H 0.202 0.798 31 H 0.183 0.817 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.110 0.890 39 H 0.118 0.882 40 H 0.115 0.885 41 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges -16.915 8.313 16.374 24.967 hybrid contribution -0.915 -1.710 -0.498 2.003 sum -17.831 6.602 15.875 24.770 Atomic orbital electron populations 1.21162 0.87545 1.04884 1.04986 1.20597 0.98192 0.90919 0.89178 1.21528 0.93260 0.98948 1.01861 1.21496 0.95724 0.96555 0.87957 1.30607 1.26437 0.99358 1.21797 1.00531 0.73920 0.72034 0.71180 1.93505 1.82014 1.34714 1.86383 1.93490 1.81925 1.67074 1.54289 1.59733 1.80378 1.24477 1.24210 1.23382 1.00256 0.82053 0.95300 1.20892 0.96910 0.94395 0.91762 1.21048 1.17960 0.98462 1.16956 0.93381 1.25737 0.97450 0.99630 0.94579 1.70025 1.41090 1.18888 1.28273 0.86129 0.79470 0.78162 0.81558 1.20283 1.21559 1.15343 1.22552 1.01703 0.97898 0.75801 1.19437 0.92387 0.94247 0.88573 1.21887 1.02938 0.94703 1.04713 1.19052 0.92673 0.91919 1.12502 1.20728 0.74884 0.84021 0.81424 1.90952 1.52309 1.64465 1.34137 1.84649 1.70845 1.42356 1.33364 0.87475 0.87262 0.92138 0.79757 0.81657 0.89922 0.90980 0.91662 0.92526 0.89757 0.89910 0.89025 0.88178 0.88486 0.70371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.56 9.62 71.24 0.69 -0.88 16 2 C 0.01 0.22 5.91 -19.60 -0.12 0.11 16 3 C -0.14 -2.28 9.69 22.23 0.22 -2.06 16 4 C 0.00 0.04 9.54 22.33 0.21 0.25 16 5 C -0.69 -19.41 5.90 22.23 0.13 -19.28 16 6 S 2.73 88.78 5.50 -56.49 -0.31 88.47 16 7 O -0.98 -33.78 16.96 -128.00 -2.17 -35.95 16 8 O -0.98 -35.38 15.52 -128.00 -1.99 -37.37 16 9 N -1.05 -36.29 4.00 -549.40 -2.20 -38.48 16 10 C 0.12 4.36 7.18 83.27 0.60 4.96 16 11 C -0.02 -0.76 2.97 -11.12 -0.03 -0.79 16 12 C -0.51 -26.17 9.38 25.60 0.24 -25.93 16 13 H 0.05 2.74 8.06 -2.91 -0.02 2.72 16 14 C 0.02 1.33 5.47 84.65 0.46 1.79 16 15 N -0.94 -55.99 13.96 21.45 0.30 -55.69 16 16 Si 0.92 41.42 27.15 68.60 1.86 43.28 16 17 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 18 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 19 H -0.23 -9.13 5.72 99.48 0.57 -8.56 16 20 C 0.14 5.15 8.29 83.18 0.69 5.84 16 21 C 0.06 1.58 5.91 -19.60 -0.12 1.47 16 22 C -0.19 -5.50 7.76 71.24 0.55 -4.95 16 23 C -0.16 -4.04 5.75 -20.10 -0.12 -4.16 16 24 C 0.55 13.29 4.81 70.33 0.34 13.62 16 25 O -0.53 -16.11 17.89 19.95 0.36 -15.75 16 26 O -0.50 -8.38 13.44 -56.26 -0.76 -9.14 16 27 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.11 0.78 8.08 -2.39 -0.02 0.76 16 29 H 0.06 0.90 7.08 -2.38 -0.02 0.89 16 30 H 0.19 1.43 8.06 -2.91 -0.02 1.41 16 31 H 0.17 3.03 7.32 -2.91 -0.02 3.01 16 32 H 0.08 3.17 8.10 -2.38 -0.02 3.16 16 33 H 0.07 2.55 4.62 -2.39 -0.01 2.54 16 34 H 0.07 2.66 7.03 -2.39 -0.02 2.65 16 35 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 36 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 37 H 0.08 2.95 8.10 -2.39 -0.02 2.93 16 38 H 0.09 2.86 7.07 -2.38 -0.02 2.84 16 39 H 0.10 3.13 4.14 -2.39 -0.01 3.12 16 40 H 0.10 2.47 7.28 -2.39 -0.02 2.45 16 41 H 0.43 3.06 9.11 -74.06 -0.67 2.39 16 Total: -1.00 -74.07 351.18 -0.87 -74.94 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: 0.28 Total: 15.70 kcal Atomic # 6 Polarization: -33.75 SS G_CDS: 3.75 Total: -30.01 kcal Atomic # 7 Polarization: -92.28 SS G_CDS: -1.90 Total: -94.17 kcal Atomic # 8 Polarization: -93.65 SS G_CDS: -4.56 Total: -98.21 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 1.86 Total: 43.28 kcal Atomic # 16 Polarization: 88.78 SS G_CDS: -0.31 Total: 88.47 kcal Total: -74.07 -0.87 -74.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871982929.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.918 kcal (2) G-P(sol) polarization free energy of solvation -74.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds