Wall clock time and date at job start Tue Mar 31 2020 22:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50698 * 109.46953 * 2 1 4 4 C 1.37965 * 120.07524 * 98.38089 * 3 2 1 5 5 C 1.38349 * 120.15145 * 180.02562 * 4 3 2 6 6 C 1.38395 * 120.30082 * 359.97438 * 5 4 3 7 7 S 1.76198 * 119.92044 * 179.97438 * 6 5 4 8 8 O 1.42096 * 106.40430 * 336.45948 * 7 6 5 9 9 O 1.42104 * 106.40009 * 203.54285 * 7 6 5 10 10 N 1.65592 * 107.21951 * 90.00506 * 7 6 5 11 11 C 1.47586 * 134.49078 * 89.99555 * 10 7 6 12 12 C 1.53951 * 86.11328 * 204.63996 * 11 10 7 13 13 C 1.50707 * 113.73995 * 221.94133 * 12 11 10 14 14 H 1.08000 * 120.00062 * 358.07500 * 13 12 11 15 15 C 1.37877 * 119.99837 * 178.07946 * 13 12 11 16 16 N 1.31513 * 120.00137 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00034 * 180.02562 * 15 13 12 18 18 H 1.48507 * 109.47111 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47585 * 119.99462 * 17 15 13 20 20 H 1.48502 * 109.47389 * 239.99919 * 17 15 13 21 21 C 1.47927 * 134.50474 * 269.99999 * 10 7 6 22 22 C 1.37922 * 120.14933 * 0.26345 * 6 5 4 23 23 C 1.39611 * 120.07823 * 278.39901 * 3 2 1 24 24 C 1.47721 * 120.14665 * 359.97438 * 23 3 2 25 25 O 1.21466 * 120.00264 * 5.40311 * 24 23 3 26 26 O 1.34714 * 119.99816 * 185.40029 * 24 23 3 27 27 H 1.08997 * 109.47135 * 300.00252 * 1 2 3 28 28 H 1.09001 * 109.46677 * 59.99744 * 1 2 3 29 29 H 1.08997 * 109.46908 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47056 * 240.00501 * 2 1 3 31 31 H 1.09000 * 109.47310 * 119.99856 * 2 1 3 32 32 H 1.07997 * 119.92599 * 359.97438 * 4 3 2 33 33 H 1.07998 * 119.85079 * 180.02562 * 5 4 3 34 34 H 1.08996 * 113.76937 * 90.34417 * 11 10 7 35 35 H 1.08996 * 113.76811 * 318.93523 * 11 10 7 36 36 H 1.08996 * 113.74371 * 90.74262 * 12 11 10 37 37 H 0.97000 * 120.00153 * 180.02562 * 16 15 13 38 38 H 1.08997 * 113.86688 * 41.09054 * 21 10 7 39 39 H 1.09000 * 113.76617 * 269.60596 * 21 10 7 40 40 H 1.07998 * 120.07430 * 179.71860 * 22 6 5 41 41 H 0.96706 * 116.99936 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4268 2.0147 1.1812 5 6 2.8877 3.3191 1.1831 6 6 2.9569 4.0370 0.0018 7 16 3.5448 5.6979 0.0159 8 8 3.3386 6.1854 1.3346 9 8 3.0027 6.3252 -1.1382 10 7 5.1842 5.6396 -0.2101 11 6 6.0666 5.6620 -1.3929 12 6 7.0945 4.9317 -0.5097 13 6 8.5044 5.4379 -0.6744 14 1 8.7172 6.2209 -1.3871 15 6 9.5226 4.9014 0.0848 16 7 9.2634 3.9482 0.9530 17 14 11.2701 5.5293 -0.1188 18 1 11.2955 6.5962 -1.1515 19 1 11.7522 6.0793 1.1736 20 1 12.1518 4.4114 -0.5408 21 6 6.3526 5.5440 0.6921 22 6 2.5611 3.4571 -1.1853 23 6 2.0992 2.1393 -1.1952 24 6 1.6786 1.5099 -2.4637 25 8 1.1822 0.4014 -2.4564 26 8 1.8456 2.1655 -3.6287 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.3750 1.4603 2.1065 33 1 3.1957 3.7791 2.1104 34 1 6.3765 6.6636 -1.6910 35 1 5.6994 5.0632 -2.2263 36 1 7.0244 3.8452 -0.5615 37 1 9.9797 3.5709 1.4874 38 1 6.2134 4.8512 1.5220 39 1 6.7461 6.5111 1.0051 40 1 2.6113 4.0199 -2.1057 41 1 1.5548 1.7133 -4.4325 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871983061.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:44 Heat of formation + Delta-G solvation = -106.099840 kcal Electronic energy + Delta-G solvation = -27408.397903 eV Core-core repulsion = 23381.514309 eV Total energy + Delta-G solvation = -4026.883595 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.88608 -38.97678 -38.05227 -36.89757 -36.48614 -35.54078 -34.20455 -32.62605 -31.71020 -29.96969 -28.28954 -25.29276 -25.16404 -24.51387 -24.04834 -22.30343 -21.21987 -19.78436 -18.76452 -18.22322 -17.78271 -16.93139 -16.50693 -16.42035 -16.03026 -15.92407 -15.49031 -15.09764 -14.60684 -14.27822 -14.06657 -13.99107 -13.69317 -13.31276 -13.09653 -13.00996 -12.78878 -12.22984 -12.08664 -11.95213 -11.81983 -11.72313 -11.69492 -11.56904 -11.55973 -11.36245 -11.17531 -11.02814 -10.80760 -10.53546 -10.41995 -10.26904 -9.46242 -9.32922 -9.29044 -9.05080 -8.63184 -8.25510 -6.17921 -4.22420 0.32516 0.62250 0.84834 2.23080 2.76599 3.17080 3.23286 3.32527 3.35728 3.49550 4.05092 4.28280 4.33727 4.40875 4.54593 4.74450 4.93697 5.09452 5.14517 5.14687 5.22901 5.24846 5.42992 5.60135 5.67329 5.68795 5.77330 5.83515 5.91157 6.00504 6.14814 6.20410 6.21614 6.32877 6.35370 6.46585 6.50270 6.67152 6.81583 7.46502 7.61239 7.66383 7.80177 8.19022 8.80667 9.43839 10.91657 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.013289 B = 0.003411 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.565488 B = 8207.324403 C = 8728.545004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.100 4.100 3 C 0.032 3.968 4 C -0.152 4.152 5 C 0.023 3.977 6 C -0.689 4.689 7 S 2.701 3.299 8 O -0.963 6.963 9 O -0.966 6.966 10 N -1.041 6.041 11 C 0.127 3.873 12 C 0.036 3.964 13 C -0.518 4.518 14 H 0.064 0.936 15 C 0.067 3.933 16 N -0.887 5.887 17 Si 0.894 3.106 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.284 1.284 21 C 0.137 3.863 22 C 0.044 3.956 23 C -0.156 4.156 24 C 0.529 3.471 25 O -0.506 6.506 26 O -0.509 6.509 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.101 0.899 31 H 0.073 0.927 32 H 0.142 0.858 33 H 0.148 0.852 34 H 0.077 0.923 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.263 0.737 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.154 0.846 41 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.530 -6.202 -2.655 16.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.137 4.137 3 C 0.032 3.968 4 C -0.170 4.170 5 C 0.004 3.996 6 C -0.773 4.773 7 S 2.793 3.207 8 O -0.954 6.954 9 O -0.956 6.956 10 N -0.883 5.883 11 C 0.002 3.998 12 C 0.014 3.986 13 C -0.557 4.557 14 H 0.083 0.917 15 C -0.136 4.136 16 N -0.524 5.524 17 Si 0.722 3.278 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.210 1.210 21 C 0.013 3.987 22 C 0.024 3.976 23 C -0.158 4.158 24 C 0.375 3.625 25 O -0.396 6.396 26 O -0.321 6.321 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.119 0.881 31 H 0.092 0.908 32 H 0.160 0.840 33 H 0.166 0.834 34 H 0.095 0.905 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.171 0.829 41 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -15.244 -5.676 -2.015 16.390 hybrid contribution 0.759 -0.770 -0.492 1.188 sum -14.485 -6.446 -2.507 16.052 Atomic orbital electron populations 1.21615 0.93730 1.02096 1.01809 1.20943 0.97204 0.91287 1.04270 1.20316 0.89361 0.95854 0.91309 1.21160 1.02434 0.95527 0.97904 1.21241 0.88216 0.93128 0.96982 1.31367 1.18369 1.28319 0.99235 1.01522 0.72291 0.73505 0.73339 1.93540 1.85180 1.77820 1.38824 1.93536 1.78066 1.72975 1.51043 1.60166 1.19099 1.89124 1.19952 1.23056 0.88173 1.00830 0.87748 1.20621 0.92289 0.96512 0.89141 1.21090 0.91378 1.20810 1.22433 0.91746 1.25018 0.99160 0.94490 0.94936 1.69949 1.32918 1.25870 1.23659 0.86508 0.84375 0.78851 0.78099 1.19581 1.20944 1.20994 1.23301 0.79617 1.00360 0.95450 1.21201 0.86372 0.92659 0.97350 1.18922 1.10409 0.95732 0.90753 1.20731 0.74844 0.82950 0.84007 1.90840 1.41393 1.19952 1.87462 1.84596 1.78547 1.51439 1.17478 0.93132 0.92041 0.92101 0.88089 0.90830 0.84005 0.83432 0.90461 0.92174 0.91874 0.92741 0.91907 0.90554 0.82861 0.72598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.42 37.16 0.35 -0.97 16 2 C -0.10 -1.05 5.33 -27.88 -0.15 -1.20 16 3 C 0.03 0.40 5.17 -104.21 -0.54 -0.14 16 4 C -0.15 -1.79 9.66 -39.64 -0.38 -2.17 16 5 C 0.02 0.32 9.52 -39.48 -0.38 -0.06 16 6 C -0.69 -10.39 5.97 -39.64 -0.24 -10.63 16 7 S 2.70 46.86 6.23 -107.50 -0.67 46.19 16 8 O -0.96 -18.44 17.25 -57.17 -0.99 -19.43 16 9 O -0.97 -18.21 17.24 -57.17 -0.99 -19.19 16 10 N -1.04 -19.33 4.12 -118.53 -0.49 -19.82 16 11 C 0.13 2.38 8.53 -2.96 -0.03 2.35 16 12 C 0.04 0.79 3.60 -90.84 -0.33 0.46 16 13 C -0.52 -12.76 8.77 -34.44 -0.30 -13.06 16 14 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 15 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -23.54 13.29 55.43 0.74 -22.81 16 17 Si 0.89 19.75 29.54 -169.99 -5.02 14.73 16 18 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 21 C 0.14 2.83 8.55 -2.78 -0.02 2.81 16 22 C 0.04 0.62 9.09 -39.17 -0.36 0.27 16 23 C -0.16 -2.08 5.87 -104.98 -0.62 -2.69 16 24 C 0.53 6.42 8.13 34.61 0.28 6.70 16 25 O -0.51 -6.49 12.37 -19.24 -0.24 -6.73 16 26 O -0.51 -4.96 12.70 -40.53 -0.51 -5.47 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.68 6.56 -51.93 -0.34 0.34 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.10 1.18 5.97 -51.93 -0.31 0.87 16 31 H 0.07 0.64 8.02 -51.93 -0.42 0.23 16 32 H 0.14 1.25 8.05 -52.49 -0.42 0.83 16 33 H 0.15 1.83 7.61 -52.49 -0.40 1.43 16 34 H 0.08 1.40 8.09 -51.93 -0.42 0.98 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 37 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 38 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.08 1.59 8.09 -51.93 -0.42 1.17 16 40 H 0.15 2.08 7.17 -52.49 -0.38 1.70 16 41 H 0.42 1.96 9.11 45.56 0.42 2.38 16 LS Contribution 362.61 15.07 5.46 5.46 Total: -1.00 -31.22 362.61 -9.85 -41.07 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -4.35 Total: 2.73 kcal Atomic # 6 Polarization: -13.93 SS G_CDS: -2.80 Total: -16.73 kcal Atomic # 7 Polarization: -42.88 SS G_CDS: 0.25 Total: -42.63 kcal Atomic # 8 Polarization: -48.10 SS G_CDS: -2.72 Total: -50.83 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Atomic # 16 Polarization: 46.86 SS G_CDS: -0.67 Total: 46.19 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.22 -9.85 -41.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871983061.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.033 kcal (2) G-P(sol) polarization free energy of solvation -31.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds