Wall clock time and date at job start Tue Mar 31 2020 22:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50698 * 109.46953 * 2 1 4 4 C 1.37965 * 120.07524 * 98.38089 * 3 2 1 5 5 C 1.38349 * 120.15145 * 180.02562 * 4 3 2 6 6 C 1.38395 * 120.30082 * 359.97438 * 5 4 3 7 7 S 1.76198 * 119.92044 * 179.97438 * 6 5 4 8 8 O 1.42096 * 106.40430 * 336.45948 * 7 6 5 9 9 O 1.42104 * 106.40009 * 203.54285 * 7 6 5 10 10 N 1.65592 * 107.21951 * 90.00506 * 7 6 5 11 11 C 1.47586 * 134.49078 * 89.99555 * 10 7 6 12 12 C 1.53951 * 86.11328 * 204.63996 * 11 10 7 13 13 C 1.50707 * 113.73995 * 221.94133 * 12 11 10 14 14 H 1.08000 * 120.00062 * 358.07500 * 13 12 11 15 15 C 1.37877 * 119.99837 * 178.07946 * 13 12 11 16 16 N 1.31513 * 120.00137 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00034 * 180.02562 * 15 13 12 18 18 H 1.48507 * 109.47111 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47585 * 119.99462 * 17 15 13 20 20 H 1.48502 * 109.47389 * 239.99919 * 17 15 13 21 21 C 1.47927 * 134.50474 * 269.99999 * 10 7 6 22 22 C 1.37922 * 120.14933 * 0.26345 * 6 5 4 23 23 C 1.39611 * 120.07823 * 278.39901 * 3 2 1 24 24 C 1.47721 * 120.14665 * 359.97438 * 23 3 2 25 25 O 1.21466 * 120.00264 * 5.40311 * 24 23 3 26 26 O 1.34714 * 119.99816 * 185.40029 * 24 23 3 27 27 H 1.08997 * 109.47135 * 300.00252 * 1 2 3 28 28 H 1.09001 * 109.46677 * 59.99744 * 1 2 3 29 29 H 1.08997 * 109.46908 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47056 * 240.00501 * 2 1 3 31 31 H 1.09000 * 109.47310 * 119.99856 * 2 1 3 32 32 H 1.07997 * 119.92599 * 359.97438 * 4 3 2 33 33 H 1.07998 * 119.85079 * 180.02562 * 5 4 3 34 34 H 1.08996 * 113.76937 * 90.34417 * 11 10 7 35 35 H 1.08996 * 113.76811 * 318.93523 * 11 10 7 36 36 H 1.08996 * 113.74371 * 90.74262 * 12 11 10 37 37 H 0.97000 * 120.00153 * 180.02562 * 16 15 13 38 38 H 1.08997 * 113.86688 * 41.09054 * 21 10 7 39 39 H 1.09000 * 113.76617 * 269.60596 * 21 10 7 40 40 H 1.07998 * 120.07430 * 179.71860 * 22 6 5 41 41 H 0.96706 * 116.99936 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4268 2.0147 1.1812 5 6 2.8877 3.3191 1.1831 6 6 2.9569 4.0370 0.0018 7 16 3.5448 5.6979 0.0159 8 8 3.3386 6.1854 1.3346 9 8 3.0027 6.3252 -1.1382 10 7 5.1842 5.6396 -0.2101 11 6 6.0666 5.6620 -1.3929 12 6 7.0945 4.9317 -0.5097 13 6 8.5044 5.4379 -0.6744 14 1 8.7172 6.2209 -1.3871 15 6 9.5226 4.9014 0.0848 16 7 9.2634 3.9482 0.9530 17 14 11.2701 5.5293 -0.1188 18 1 11.2955 6.5962 -1.1515 19 1 11.7522 6.0793 1.1736 20 1 12.1518 4.4114 -0.5408 21 6 6.3526 5.5440 0.6921 22 6 2.5611 3.4571 -1.1853 23 6 2.0992 2.1393 -1.1952 24 6 1.6786 1.5099 -2.4637 25 8 1.1822 0.4014 -2.4564 26 8 1.8456 2.1655 -3.6287 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.3750 1.4603 2.1065 33 1 3.1957 3.7791 2.1104 34 1 6.3765 6.6636 -1.6910 35 1 5.6994 5.0632 -2.2263 36 1 7.0244 3.8452 -0.5615 37 1 9.9797 3.5709 1.4874 38 1 6.2134 4.8512 1.5220 39 1 6.7461 6.5111 1.0051 40 1 2.6113 4.0199 -2.1057 41 1 1.5548 1.7133 -4.4325 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871983061.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:44 Heat of formation + Delta-G solvation = -126.858567 kcal Electronic energy + Delta-G solvation = -27409.298069 eV Core-core repulsion = 23381.514309 eV Total energy + Delta-G solvation = -4027.783761 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.81584 -39.92954 -39.66640 -38.36250 -37.35412 -37.01042 -35.11361 -34.52171 -32.70807 -30.90884 -30.00419 -26.80013 -26.32305 -26.16749 -25.02568 -23.21413 -22.24342 -21.39946 -19.95688 -19.35824 -19.01023 -18.49215 -18.13314 -17.53126 -17.07977 -16.92965 -16.55907 -16.50312 -16.24032 -15.68495 -15.18415 -14.87336 -14.69512 -14.66140 -14.44650 -14.18166 -13.94878 -13.48623 -13.33290 -13.27489 -13.21483 -13.15487 -13.07151 -12.96292 -12.80257 -12.77052 -12.48786 -12.24882 -12.20227 -12.06599 -11.79085 -11.21595 -11.03061 -10.89031 -10.53463 -10.43359 -10.30407 -9.82930 -8.10399 -6.19381 -0.80682 -0.59894 -0.25007 1.27409 1.48023 1.52467 1.61825 1.89358 1.94007 2.34623 2.50077 2.69553 3.03371 3.22814 3.48650 3.50560 3.76226 3.92844 4.08910 4.17753 4.25927 4.32370 4.43427 4.47509 4.55589 4.64349 4.66943 4.74247 4.81200 4.85168 4.92445 4.96603 5.03798 5.05556 5.17420 5.24860 5.34824 5.47462 5.61568 5.68235 5.89871 5.94412 6.33746 6.89161 6.89959 7.49476 8.99221 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.013289 B = 0.003411 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.565488 B = 8207.324403 C = 8728.545004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.098 4.098 3 C 0.031 3.969 4 C -0.144 4.144 5 C 0.011 3.989 6 C -0.697 4.697 7 S 2.718 3.282 8 O -0.983 6.983 9 O -0.982 6.982 10 N -1.041 6.041 11 C 0.132 3.868 12 C 0.024 3.976 13 C -0.528 4.528 14 H 0.066 0.934 15 C 0.021 3.979 16 N -0.918 5.918 17 Si 0.952 3.048 18 H -0.265 1.265 19 H -0.284 1.284 20 H -0.285 1.285 21 C 0.141 3.859 22 C 0.034 3.966 23 C -0.167 4.167 24 C 0.532 3.468 25 O -0.515 6.515 26 O -0.508 6.508 27 H 0.059 0.941 28 H 0.044 0.956 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.176 0.824 33 H 0.156 0.844 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.042 0.958 37 H 0.262 0.738 38 H 0.061 0.939 39 H 0.071 0.929 40 H 0.156 0.844 41 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.217 -7.008 -2.803 16.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.135 4.135 3 C 0.031 3.969 4 C -0.162 4.162 5 C -0.009 4.009 6 C -0.785 4.785 7 S 2.814 3.186 8 O -0.974 6.974 9 O -0.973 6.973 10 N -0.883 5.883 11 C 0.008 3.992 12 C 0.002 3.998 13 C -0.567 4.567 14 H 0.084 0.916 15 C -0.179 4.179 16 N -0.557 5.557 17 Si 0.778 3.222 18 H -0.189 1.189 19 H -0.210 1.210 20 H -0.211 1.211 21 C 0.016 3.984 22 C 0.014 3.986 23 C -0.169 4.169 24 C 0.377 3.623 25 O -0.407 6.407 26 O -0.323 6.323 27 H 0.078 0.922 28 H 0.063 0.937 29 H 0.092 0.908 30 H 0.108 0.892 31 H 0.115 0.885 32 H 0.194 0.806 33 H 0.173 0.827 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.173 0.827 41 H 0.299 0.701 Dipole moment (debyes) X Y Z Total from point charges -15.915 -6.433 -2.204 17.307 hybrid contribution 0.864 -0.600 -0.501 1.165 sum -15.051 -7.033 -2.705 16.832 Atomic orbital electron populations 1.21600 0.93086 1.02845 1.01452 1.20988 0.97633 0.90028 1.04859 1.20679 0.88421 0.96712 0.91119 1.21525 1.00806 0.94774 0.99137 1.21483 0.88609 0.94051 0.96726 1.30895 1.20178 1.26928 1.00507 1.00764 0.71383 0.74055 0.72439 1.93509 1.85188 1.79042 1.39683 1.93510 1.77939 1.74266 1.51539 1.60042 1.19388 1.89604 1.19228 1.23007 0.87102 1.01045 0.88060 1.20554 0.92305 0.95563 0.91329 1.21445 0.92766 1.20487 1.21972 0.91580 1.25694 1.02508 0.94807 0.94898 1.70047 1.33778 1.27165 1.24690 0.85602 0.80357 0.78299 0.77934 1.18887 1.21026 1.21074 1.23042 0.80478 0.99859 0.95070 1.21264 0.86838 0.93316 0.97133 1.19165 1.10272 0.95476 0.92012 1.20553 0.74685 0.82753 0.84321 1.90840 1.41840 1.20245 1.87729 1.84552 1.78272 1.51529 1.17900 0.92160 0.93699 0.90833 0.89210 0.88536 0.80637 0.82650 0.89793 0.89996 0.93983 0.92860 0.92067 0.91036 0.82672 0.70126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.28 9.42 71.98 0.68 -1.60 16 2 C -0.10 -1.82 5.33 29.85 0.16 -1.66 16 3 C 0.03 0.71 5.17 -19.60 -0.10 0.60 16 4 C -0.14 -3.05 9.66 22.23 0.21 -2.83 16 5 C 0.01 0.27 9.52 22.33 0.21 0.48 16 6 C -0.70 -20.58 5.97 22.23 0.13 -20.45 16 7 S 2.72 93.56 6.23 -56.49 -0.35 93.21 16 8 O -0.98 -37.52 17.25 -128.00 -2.21 -39.73 16 9 O -0.98 -36.62 17.24 -128.00 -2.21 -38.82 16 10 N -1.04 -38.52 4.12 -528.91 -2.18 -40.70 16 11 C 0.13 4.90 8.53 86.49 0.74 5.64 16 12 C 0.02 1.06 3.60 -10.88 -0.04 1.02 16 13 C -0.53 -26.05 8.77 25.60 0.22 -25.82 16 14 H 0.07 3.16 7.81 -2.91 -0.02 3.14 16 15 C 0.02 1.06 5.46 84.65 0.46 1.52 16 16 N -0.92 -49.27 13.29 21.45 0.28 -48.99 16 17 Si 0.95 40.50 29.54 68.60 2.03 42.52 16 18 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 19 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 20 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 21 C 0.14 5.86 8.55 86.42 0.74 6.60 16 22 C 0.03 0.94 9.09 22.54 0.20 1.15 16 23 C -0.17 -4.24 5.87 -20.10 -0.12 -4.36 16 24 C 0.53 12.21 8.13 70.33 0.57 12.78 16 25 O -0.52 -12.52 12.37 19.95 0.25 -12.27 16 26 O -0.51 -9.16 12.70 -56.24 -0.71 -9.87 16 27 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.04 0.92 6.56 -2.39 -0.02 0.91 16 29 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.09 1.92 5.97 -2.39 -0.01 1.91 16 31 H 0.10 1.35 8.02 -2.39 -0.02 1.33 16 32 H 0.18 2.45 8.05 -2.91 -0.02 2.42 16 33 H 0.16 3.69 7.61 -2.91 -0.02 3.66 16 34 H 0.08 2.98 8.09 -2.39 -0.02 2.96 16 35 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 36 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.26 13.46 8.31 -92.71 -0.77 12.69 16 38 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 39 H 0.07 3.02 8.09 -2.39 -0.02 3.00 16 40 H 0.16 4.12 7.17 -2.91 -0.02 4.10 16 41 H 0.44 3.35 9.11 -74.05 -0.67 2.67 16 Total: -1.00 -65.91 362.61 -0.62 -66.53 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: 0.40 Total: 15.04 kcal Atomic # 6 Polarization: -31.00 SS G_CDS: 4.08 Total: -26.92 kcal Atomic # 7 Polarization: -87.79 SS G_CDS: -1.90 Total: -89.69 kcal Atomic # 8 Polarization: -95.81 SS G_CDS: -4.88 Total: -100.69 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.52 kcal Atomic # 16 Polarization: 93.56 SS G_CDS: -0.35 Total: 93.21 kcal Total: -65.91 -0.62 -66.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871983061.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.328 kcal (2) G-P(sol) polarization free energy of solvation -65.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds