Wall clock time and date at job start Tue Mar 31 2020 22:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38305 * 119.96870 * 2 1 4 4 C 1.38256 * 120.14904 * 180.23349 * 3 2 1 5 5 C 1.38139 * 120.07027 * 359.49518 * 4 3 2 6 6 C 1.50698 * 120.03944 * 180.23108 * 5 4 3 7 7 C 1.38871 * 119.92236 * 0.50505 * 5 4 3 8 8 N 1.39890 * 120.06542 * 179.72385 * 7 5 4 9 9 C 1.34785 * 119.99688 * 132.62126 * 8 7 5 10 10 S 1.71197 * 119.99581 * 4.33729 * 9 8 7 11 11 N 1.34776 * 119.99633 * 184.33470 * 9 8 7 12 12 N 1.40088 * 120.00230 * 0.02562 * 11 9 8 13 13 C 1.34785 * 120.00238 * 180.02562 * 12 11 9 14 14 O 1.21285 * 119.99262 * 359.97438 * 13 12 11 15 15 C 1.50694 * 120.00395 * 179.97438 * 13 12 11 16 16 S 1.81001 * 109.47255 * 179.97438 * 15 13 12 17 17 C 1.76199 * 100.00153 * 179.97438 * 16 15 13 18 18 H 1.08000 * 119.99683 * 0.02562 * 17 16 15 19 19 C 1.38798 * 119.99927 * 180.02562 * 17 16 15 20 20 N 1.31625 * 120.00212 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99733 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47316 * 90.00162 * 21 19 17 23 23 H 1.48499 * 109.47164 * 210.00101 * 21 19 17 24 24 H 1.48502 * 109.47399 * 330.00106 * 21 19 17 25 25 C 1.38093 * 119.96578 * 179.97438 * 2 1 3 26 26 H 1.08995 * 109.47292 * 89.99639 * 1 2 3 27 27 H 1.09006 * 109.47140 * 209.99961 * 1 2 3 28 28 H 1.09001 * 109.46926 * 329.99447 * 1 2 3 29 29 H 1.08003 * 119.92216 * 359.96004 * 3 2 1 30 30 H 1.07995 * 119.97038 * 179.74159 * 4 3 2 31 31 H 1.08998 * 109.46785 * 270.27855 * 6 5 4 32 32 H 1.08995 * 109.46984 * 30.27414 * 6 5 4 33 33 H 1.09000 * 109.47070 * 150.27782 * 6 5 4 34 34 H 0.96997 * 120.00420 * 312.62256 * 8 7 5 35 35 H 0.97004 * 119.99510 * 180.02562 * 11 9 8 36 36 H 0.97000 * 120.00734 * 359.97438 * 12 11 9 37 37 H 1.08999 * 109.47324 * 299.99979 * 15 13 12 38 38 H 1.09008 * 109.47161 * 59.99653 * 15 13 12 39 39 H 0.96996 * 119.99946 * 180.02562 * 20 19 17 40 40 H 1.08002 * 120.03139 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1981 0.0000 4 6 3.5804 1.2025 -0.0049 5 6 4.2764 0.0092 0.0008 6 6 5.7833 0.0148 0.0007 7 6 3.5857 -1.1955 0.0007 8 7 4.2874 -2.4057 0.0006 9 6 3.9418 -3.3852 0.8595 10 16 2.5756 -3.1921 1.8730 11 7 4.6716 -4.5166 0.9204 12 7 5.7898 -4.6743 0.0913 13 6 6.5194 -5.8060 0.1518 14 8 6.2080 -6.6876 0.9244 15 6 7.7218 -5.9759 -0.7404 16 16 8.4841 -7.5871 -0.4253 17 6 9.8228 -7.5212 -1.5691 18 1 9.9586 -6.6493 -2.1917 19 6 10.7027 -8.5899 -1.6698 20 7 10.5369 -9.6528 -0.9113 21 14 12.1223 -8.5197 -2.8819 22 1 13.3106 -7.9253 -2.2187 23 1 12.4481 -9.8933 -3.3428 24 1 11.7369 -7.6847 -4.0479 25 6 2.1967 -1.1963 0.0005 26 1 -0.3633 0.0001 -1.0276 27 1 -0.3634 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5139 29 1 1.6561 2.1324 -0.0007 30 1 4.1169 2.1397 -0.0091 31 1 6.1466 0.0163 -1.0270 32 1 6.1433 0.9061 0.5146 33 1 6.1500 -0.8739 0.5144 34 1 5.0228 -2.5399 -0.6175 35 1 4.4226 -5.2217 1.5383 36 1 6.0386 -3.9694 -0.5268 37 1 7.4113 -5.9184 -1.7836 38 1 8.4435 -5.1859 -0.5320 39 1 11.1520 -10.3994 -0.9815 40 1 1.6567 -2.1316 0.0014 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873753907.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:45 Heat of formation + Delta-G solvation = 23.741194 kcal Electronic energy + Delta-G solvation = -23268.760579 eV Core-core repulsion = 19722.552936 eV Total energy + Delta-G solvation = -3546.207643 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 339.082 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.95470 -40.93753 -39.22646 -36.69139 -34.63532 -34.59255 -33.64910 -30.98183 -30.22566 -30.08572 -27.68840 -25.98890 -25.26979 -23.79390 -22.73698 -22.02658 -20.63514 -19.97725 -19.33048 -18.04371 -17.36118 -17.18579 -17.08033 -16.88316 -16.62570 -16.48344 -16.16084 -15.44632 -15.18330 -14.83707 -14.76609 -14.57241 -14.08095 -13.86323 -13.80481 -13.49767 -13.18900 -12.99497 -12.89968 -12.75596 -12.67742 -12.59150 -12.31203 -12.17620 -11.93341 -11.78379 -11.52685 -11.15296 -10.52740 -10.32122 -9.75803 -9.24473 -9.09413 -8.69701 -8.55619 -8.36407 -6.14719 -0.29641 -0.13165 0.42971 0.56559 0.82437 1.22899 1.32060 1.40621 1.43147 1.51609 1.60798 2.24216 2.77374 2.82674 2.99311 3.24917 3.63669 3.85560 3.92951 4.14186 4.20110 4.22704 4.31861 4.42368 4.52095 4.65786 4.72695 4.75739 4.79928 4.89197 4.93382 5.15099 5.18163 5.32299 5.38217 5.42578 5.51379 5.58336 5.76253 5.81780 5.94207 6.15931 6.18911 6.78043 7.06259 8.72309 Molecular weight = 339.08amu Principal moments of inertia in cm(-1) A = 0.020823 B = 0.002147 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.364735 B =13035.371950 C =14010.896171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.101 4.101 3 C -0.108 4.108 4 C -0.119 4.119 5 C -0.091 4.091 6 C -0.119 4.119 7 C 0.102 3.898 8 N -0.609 5.609 9 C 0.579 3.421 10 S -0.654 6.654 11 N -0.456 5.456 12 N -0.529 5.529 13 C 0.547 3.453 14 O -0.540 6.540 15 C -0.122 4.122 16 S -0.142 6.142 17 C -0.544 4.544 18 H 0.091 0.909 19 C 0.013 3.987 20 N -0.911 5.911 21 Si 0.996 3.004 22 H -0.269 1.269 23 H -0.283 1.283 24 H -0.255 1.255 25 C -0.080 4.080 26 H 0.079 0.921 27 H 0.056 0.944 28 H 0.079 0.921 29 H 0.147 0.853 30 H 0.152 0.848 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.056 0.944 34 H 0.418 0.582 35 H 0.457 0.543 36 H 0.439 0.561 37 H 0.129 0.871 38 H 0.130 0.870 39 H 0.271 0.729 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.412 25.971 -4.242 29.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.103 4.103 3 C -0.126 4.126 4 C -0.138 4.138 5 C -0.094 4.094 6 C -0.176 4.176 7 C 0.009 3.991 8 N -0.237 5.237 9 C 0.216 3.784 10 S -0.527 6.527 11 N -0.182 5.182 12 N -0.284 5.284 13 C 0.334 3.666 14 O -0.413 6.413 15 C -0.275 4.275 16 S 0.085 5.915 17 C -0.692 4.692 18 H 0.109 0.891 19 C -0.192 4.192 20 N -0.548 5.548 21 Si 0.818 3.182 22 H -0.195 1.195 23 H -0.208 1.208 24 H -0.179 1.179 25 C -0.101 4.101 26 H 0.098 0.902 27 H 0.075 0.925 28 H 0.098 0.902 29 H 0.164 0.836 30 H 0.169 0.831 31 H 0.111 0.889 32 H 0.103 0.897 33 H 0.075 0.925 34 H 0.260 0.740 35 H 0.307 0.693 36 H 0.285 0.715 37 H 0.147 0.853 38 H 0.148 0.852 39 H 0.080 0.920 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -13.585 24.444 -2.366 28.066 hybrid contribution 2.056 0.036 -1.833 2.754 sum -11.529 24.480 -4.199 27.383 Atomic orbital electron populations 1.20768 0.89954 1.03069 1.02862 1.19984 0.97234 0.92375 1.00695 1.21408 0.94493 0.98063 0.98636 1.21131 0.94197 0.97507 1.00920 1.19998 0.97229 0.91259 1.00900 1.20857 0.89368 1.03619 1.03736 1.17313 0.91045 0.82797 1.07907 1.41941 1.34978 1.12213 1.34567 1.22071 0.88865 0.81052 0.86377 1.93781 1.20847 1.87836 1.50232 1.44737 1.19160 1.17763 1.36516 1.45323 1.21945 1.21571 1.39537 1.20573 0.83088 0.79814 0.83141 1.90800 1.69637 1.41516 1.39374 1.23324 0.96508 1.04868 1.02762 1.85770 1.33859 1.17159 1.54699 1.23211 1.13879 1.06862 1.25214 0.89132 1.26098 1.00862 0.94017 0.98180 1.70165 1.38219 1.06763 1.39628 0.84979 0.77312 0.77788 0.78092 1.19468 1.20839 1.17878 1.21263 0.92713 0.99384 0.96788 0.90215 0.92535 0.90190 0.83564 0.83064 0.88947 0.89730 0.92452 0.74042 0.69284 0.71520 0.85283 0.85218 0.92042 0.85655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.49 10.01 71.24 0.71 -0.78 16 2 C -0.10 -1.73 5.88 -19.88 -0.12 -1.84 16 3 C -0.11 -1.42 9.70 22.29 0.22 -1.21 16 4 C -0.12 -1.46 9.70 22.25 0.22 -1.25 16 5 C -0.09 -1.29 5.90 -19.74 -0.12 -1.40 16 6 C -0.12 -1.09 9.59 71.24 0.68 -0.40 16 7 C 0.10 1.83 5.85 38.16 0.22 2.05 16 8 N -0.61 -9.59 4.38 -189.98 -0.83 -10.43 16 9 C 0.58 12.72 7.84 179.05 1.40 14.12 16 10 S -0.65 -19.80 26.55 -56.49 -1.50 -21.30 16 11 N -0.46 -9.93 6.26 -59.11 -0.37 -10.30 16 12 N -0.53 -9.93 6.26 -173.53 -1.09 -11.02 16 13 C 0.55 15.87 7.96 87.65 0.70 16.57 16 14 O -0.54 -21.13 15.70 -3.04 -0.05 -21.18 16 15 C -0.12 -3.75 6.16 71.23 0.44 -3.32 16 16 S -0.14 -6.99 20.57 -56.49 -1.16 -8.15 16 17 C -0.54 -28.11 9.50 67.95 0.65 -27.46 16 18 H 0.09 4.22 7.80 -2.91 -0.02 4.20 16 19 C 0.01 0.72 5.49 84.86 0.47 1.18 16 20 N -0.91 -53.18 13.22 21.65 0.29 -52.90 16 21 Si 1.00 40.73 29.55 68.60 2.03 42.76 16 22 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 23 H -0.28 -11.52 7.11 99.48 0.71 -10.82 16 24 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 25 C -0.08 -1.64 7.53 22.39 0.17 -1.48 16 26 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.06 0.92 8.08 -2.38 -0.02 0.90 16 28 H 0.08 0.83 8.09 -2.39 -0.02 0.81 16 29 H 0.15 1.19 8.06 -2.91 -0.02 1.16 16 30 H 0.15 1.06 8.06 -2.91 -0.02 1.04 16 31 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.08 0.64 8.09 -2.39 -0.02 0.62 16 33 H 0.06 0.58 7.39 -2.39 -0.02 0.56 16 34 H 0.42 3.80 6.39 -92.71 -0.59 3.20 16 35 H 0.46 11.57 7.98 -213.32 -1.70 9.87 16 36 H 0.44 4.36 6.71 -213.33 -1.43 2.93 16 37 H 0.13 3.29 8.14 -2.40 -0.02 3.27 16 38 H 0.13 3.29 8.14 -2.39 -0.02 3.27 16 39 H 0.27 14.78 8.31 -92.71 -0.77 14.00 16 40 H 0.13 3.06 6.31 -4.66 -0.03 3.03 16 Total: -1.00 -77.50 368.76 0.33 -77.18 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: -2.63 Total: 20.54 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: 5.64 Total: -5.21 kcal Atomic # 7 Polarization: -82.64 SS G_CDS: -2.00 Total: -84.64 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: -0.05 Total: -21.18 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.76 kcal Atomic # 16 Polarization: -26.78 SS G_CDS: -2.66 Total: -29.45 kcal Total: -77.50 0.33 -77.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873753907.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.917 kcal (2) G-P(sol) polarization free energy of solvation -77.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds