Wall clock time and date at job start Tue Mar 31 2020 22:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38308 * 119.93069 * 2 1 4 4 C 1.38088 * 120.07332 * 180.02562 * 3 2 1 5 5 C 1.38895 * 119.93113 * 0.02562 * 4 3 2 6 6 N 1.39891 * 120.07602 * 180.25811 * 5 4 3 7 7 C 1.34776 * 119.99629 * 312.55225 * 6 5 4 8 8 S 1.71204 * 119.99998 * 4.33680 * 7 6 5 9 9 N 1.34776 * 120.00162 * 184.32811 * 7 6 5 10 10 N 1.40101 * 119.99786 * 0.02562 * 9 7 6 11 11 C 1.34776 * 119.99786 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00300 * 359.97438 * 11 10 9 13 13 C 1.50703 * 119.99956 * 179.97438 * 11 10 9 14 14 S 1.80997 * 109.47278 * 179.97438 * 13 11 10 15 15 C 1.76200 * 100.00167 * 180.02562 * 14 13 11 16 16 H 1.07994 * 119.99548 * 359.97438 * 15 14 13 17 17 C 1.38796 * 119.99797 * 180.02562 * 15 14 13 18 18 N 1.31633 * 119.99400 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 120.00342 * 359.97438 * 17 15 14 20 20 H 1.48509 * 109.46904 * 90.00346 * 19 17 15 21 21 H 1.48499 * 109.47069 * 209.99985 * 19 17 15 22 22 H 1.48494 * 109.47197 * 330.00610 * 19 17 15 23 23 C 1.38870 * 119.85466 * 359.97438 * 5 4 3 24 24 C 1.50699 * 120.03359 * 180.02562 * 23 5 4 25 25 C 1.38128 * 119.93144 * 0.02562 * 23 5 4 26 26 H 1.09002 * 109.47008 * 269.97928 * 1 2 3 27 27 H 1.09004 * 109.47247 * 29.97792 * 1 2 3 28 28 H 1.09004 * 109.47129 * 149.97689 * 1 2 3 29 29 H 1.08000 * 119.95993 * 0.04426 * 3 2 1 30 30 H 1.08002 * 120.03432 * 180.02562 * 4 3 2 31 31 H 0.96989 * 120.00320 * 132.56027 * 6 5 4 32 32 H 0.96997 * 119.99720 * 180.02562 * 9 7 6 33 33 H 0.96998 * 119.99875 * 359.97438 * 10 9 7 34 34 H 1.09002 * 109.46960 * 300.00025 * 13 11 10 35 35 H 1.09000 * 109.46585 * 59.99835 * 13 11 10 36 36 H 0.97006 * 119.99868 * 179.97438 * 18 17 15 37 37 H 1.09002 * 109.46982 * 90.00396 * 24 23 5 38 38 H 1.09002 * 109.47376 * 210.00201 * 24 23 5 39 39 H 1.08996 * 109.47348 * 330.00664 * 24 23 5 40 40 H 1.07994 * 119.96868 * 179.97438 * 25 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1970 1.1986 0.0000 4 6 3.5779 1.2021 -0.0005 5 6 4.2739 0.0001 -0.0016 6 7 5.6728 0.0000 0.0033 7 6 6.3497 0.7919 -0.8519 8 16 5.5008 1.8787 -1.8665 9 7 7.6947 0.7283 -0.9082 10 7 8.3893 -0.1613 -0.0782 11 6 9.7344 -0.2253 -0.1349 12 8 10.3434 0.4869 -0.9048 13 6 10.4816 -1.1818 0.7583 14 16 12.2587 -1.0334 0.4486 15 6 12.8693 -2.2273 1.5915 16 1 12.1811 -2.7825 2.2116 17 6 14.2347 -2.4535 1.6956 18 7 14.6907 -3.3458 2.5492 19 14 15.4251 -1.4927 0.6236 20 1 15.8294 -0.2480 1.3256 21 1 16.6273 -2.3214 0.3534 22 1 14.7648 -1.1448 -0.6602 23 6 3.5781 -1.2017 -0.0016 24 6 4.3292 -2.5082 -0.0022 25 6 2.1968 -1.1983 -0.0011 26 1 -0.3633 -0.0004 1.0277 27 1 -0.3634 0.8902 -0.5135 28 1 -0.3633 -0.8898 -0.5142 29 1 1.6552 2.1329 0.0007 30 1 4.1161 2.1384 -0.0001 31 1 6.1556 -0.5699 0.6220 32 1 8.1818 1.2985 -1.5234 33 1 7.9022 -0.7312 0.5373 34 1 10.2730 -0.9432 1.8013 35 1 10.1603 -2.2018 0.5477 36 1 15.6450 -3.5042 2.6217 37 1 4.5106 -2.8234 1.0254 38 1 3.7385 -3.2667 -0.5160 39 1 5.2816 -2.3795 -0.5162 40 1 1.6550 -2.1326 -0.0015 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000873758858.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:36 Heat of formation + Delta-G solvation = 44.878906 kcal Electronic energy + Delta-G solvation = -23227.621403 eV Core-core repulsion = 19682.330360 eV Total energy + Delta-G solvation = -3545.291043 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 339.082 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.06609 -40.06062 -38.33276 -35.92401 -33.54921 -32.65570 -32.59792 -31.53976 -29.37293 -27.63844 -26.65417 -25.80811 -24.35097 -22.50583 -22.10908 -20.92705 -19.80911 -18.92502 -17.97244 -17.25224 -16.47034 -16.31755 -16.13638 -15.74452 -15.32473 -15.16377 -14.58422 -14.37209 -14.26178 -14.13543 -13.96029 -13.59693 -13.53574 -12.98997 -12.95539 -12.80807 -12.41642 -12.16764 -11.76147 -11.58189 -11.54239 -11.45060 -11.20546 -11.15042 -10.89383 -10.34132 -9.99285 -9.61498 -9.16944 -9.12395 -8.76418 -8.54425 -8.04328 -7.54296 -7.15820 -6.45296 -4.20855 0.54195 0.86775 1.12047 1.24471 1.76735 2.24858 2.33519 2.65396 3.20578 3.34545 3.36624 3.40604 3.83756 4.16153 4.27830 4.37352 4.48358 4.64557 4.78704 4.89171 4.93560 4.93795 5.00271 5.13336 5.19087 5.27644 5.34140 5.43373 5.48814 5.55453 5.59647 5.63511 5.79016 5.89851 6.01811 6.18264 6.30937 6.35690 6.68773 6.73967 6.85374 7.76886 7.80042 8.23987 8.99676 10.63507 Molecular weight = 339.08amu Principal moments of inertia in cm(-1) A = 0.023749 B = 0.002135 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.726991 B =13112.085952 C =14053.905162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.074 4.074 3 C -0.121 4.121 4 C -0.058 4.058 5 C 0.114 3.886 6 N -0.630 5.630 7 C 0.558 3.442 8 S -0.588 6.588 9 N -0.457 5.457 10 N -0.557 5.557 11 C 0.538 3.462 12 O -0.496 6.496 13 C -0.119 4.119 14 S -0.127 6.127 15 C -0.528 4.528 16 H 0.091 0.909 17 C 0.098 3.902 18 N -0.875 5.875 19 Si 0.856 3.144 20 H -0.266 1.266 21 H -0.272 1.272 22 H -0.236 1.236 23 C -0.080 4.080 24 C -0.120 4.120 25 C -0.120 4.120 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.127 0.873 30 H 0.146 0.854 31 H 0.402 0.598 32 H 0.461 0.539 33 H 0.419 0.581 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.273 0.727 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.061 0.939 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.537 3.089 -1.599 26.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.075 4.075 3 C -0.141 4.141 4 C -0.080 4.080 5 C 0.021 3.979 6 N -0.259 5.259 7 C 0.199 3.801 8 S -0.459 6.459 9 N -0.184 5.184 10 N -0.310 5.310 11 C 0.324 3.676 12 O -0.366 6.366 13 C -0.271 4.271 14 S 0.099 5.901 15 C -0.675 4.675 16 H 0.109 0.891 17 C -0.111 4.111 18 N -0.510 5.510 19 Si 0.680 3.320 20 H -0.191 1.191 21 H -0.197 1.197 22 H -0.160 1.160 23 C -0.082 4.082 24 C -0.177 4.177 25 C -0.139 4.139 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.145 0.855 30 H 0.164 0.836 31 H 0.241 0.759 32 H 0.312 0.688 33 H 0.260 0.740 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -25.764 4.765 -3.384 26.418 hybrid contribution 0.762 -1.518 1.448 2.232 sum -25.001 3.247 -1.936 25.285 Atomic orbital electron populations 1.20808 0.91100 1.02938 1.02346 1.19986 0.96167 0.93085 0.98248 1.20865 0.93335 0.97702 1.02189 1.21414 0.94250 0.97925 0.94380 1.17139 0.79229 0.94141 1.07361 1.42052 1.06221 1.41941 1.35660 1.22580 0.82891 0.87962 0.86711 1.93645 1.64918 1.40004 1.47375 1.44841 1.01158 1.35771 1.36647 1.45789 1.05741 1.39349 1.40113 1.20853 0.78895 0.83917 0.83904 1.90792 1.66149 1.41899 1.37725 1.23268 1.01957 1.00461 1.01388 1.84958 0.94289 1.55556 1.55304 1.22249 0.96060 1.24614 1.24607 0.89108 1.24697 0.97472 0.94325 0.94655 1.69925 1.14984 1.31903 1.34223 0.86759 0.81700 0.80620 0.82909 1.19051 1.19672 1.15964 1.19709 0.94091 0.93542 1.00893 1.20803 1.00128 0.94196 1.02549 1.20647 0.92319 0.97854 1.03119 0.91077 0.91353 0.91527 0.85538 0.83634 0.75942 0.68787 0.73951 0.87460 0.87427 0.91704 0.90736 0.90635 0.91958 0.85635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.60 10.01 36.00 0.36 -0.24 16 2 C -0.07 -0.57 5.88 -104.59 -0.62 -1.19 16 3 C -0.12 -1.05 9.69 -39.61 -0.38 -1.43 16 4 C -0.06 -0.58 7.89 -39.39 -0.31 -0.89 16 5 C 0.11 1.06 5.85 -83.70 -0.49 0.57 16 6 N -0.63 -5.29 4.38 -11.40 -0.05 -5.34 16 7 C 0.56 6.09 7.84 -86.92 -0.68 5.41 16 8 S -0.59 -8.43 26.56 -107.50 -2.85 -11.29 16 9 N -0.46 -4.93 6.26 29.96 0.19 -4.75 16 10 N -0.56 -5.50 6.26 31.22 0.20 -5.31 16 11 C 0.54 7.71 7.96 -10.98 -0.09 7.62 16 12 O -0.50 -9.07 15.70 5.56 0.09 -8.99 16 13 C -0.12 -1.86 6.16 36.01 0.22 -1.64 16 14 S -0.13 -2.88 18.55 -107.50 -1.99 -4.87 16 15 C -0.53 -14.01 10.04 30.94 0.31 -13.70 16 16 H 0.09 2.49 8.03 -52.49 -0.42 2.07 16 17 C 0.10 2.70 5.50 -17.43 -0.10 2.61 16 18 N -0.87 -25.01 13.97 55.49 0.78 -24.24 16 19 Si 0.86 20.53 27.74 -169.99 -4.71 15.82 16 20 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.24 -5.62 6.74 56.52 0.38 -5.24 16 23 C -0.08 -0.65 5.90 -104.43 -0.62 -1.26 16 24 C -0.12 -0.73 9.59 36.01 0.35 -0.39 16 25 C -0.12 -0.91 9.35 -39.61 -0.37 -1.28 16 26 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 28 H 0.07 0.30 8.08 -51.93 -0.42 -0.12 16 29 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 30 H 0.15 1.62 6.31 -49.67 -0.31 1.31 16 31 H 0.40 2.29 6.39 -40.82 -0.26 2.03 16 32 H 0.46 5.52 7.98 -182.60 -1.46 4.07 16 33 H 0.42 2.62 6.71 -182.60 -1.23 1.40 16 34 H 0.11 1.49 8.14 -51.92 -0.42 1.07 16 35 H 0.11 1.49 8.14 -51.92 -0.42 1.07 16 36 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 39 H 0.06 0.40 7.39 -51.93 -0.38 0.02 16 40 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 LS Contribution 366.08 15.07 5.52 5.52 Total: -1.00 -33.76 366.08 -12.28 -46.03 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -7.01 Total: 3.23 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: -2.41 Total: -5.81 kcal Atomic # 7 Polarization: -40.74 SS G_CDS: 1.11 Total: -39.63 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.09 Total: -8.99 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -4.71 Total: 15.82 kcal Atomic # 16 Polarization: -11.31 SS G_CDS: -4.85 Total: -16.16 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.76 -12.28 -46.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873758858.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.912 kcal (2) G-P(sol) polarization free energy of solvation -33.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds