Wall clock time and date at job start Tue Mar 31 2020 22:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38308 * 119.93069 * 2 1 4 4 C 1.38088 * 120.07332 * 180.02562 * 3 2 1 5 5 C 1.38895 * 119.93113 * 0.02562 * 4 3 2 6 6 N 1.39891 * 120.07602 * 180.25811 * 5 4 3 7 7 C 1.34776 * 119.99629 * 312.55225 * 6 5 4 8 8 S 1.71204 * 119.99998 * 4.33680 * 7 6 5 9 9 N 1.34776 * 120.00162 * 184.32811 * 7 6 5 10 10 N 1.40101 * 119.99786 * 0.02562 * 9 7 6 11 11 C 1.34776 * 119.99786 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00300 * 359.97438 * 11 10 9 13 13 C 1.50703 * 119.99956 * 179.97438 * 11 10 9 14 14 S 1.80997 * 109.47278 * 179.97438 * 13 11 10 15 15 C 1.76200 * 100.00167 * 180.02562 * 14 13 11 16 16 H 1.07994 * 119.99548 * 359.97438 * 15 14 13 17 17 C 1.38796 * 119.99797 * 180.02562 * 15 14 13 18 18 N 1.31633 * 119.99400 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 120.00342 * 359.97438 * 17 15 14 20 20 H 1.48509 * 109.46904 * 90.00346 * 19 17 15 21 21 H 1.48499 * 109.47069 * 209.99985 * 19 17 15 22 22 H 1.48494 * 109.47197 * 330.00610 * 19 17 15 23 23 C 1.38870 * 119.85466 * 359.97438 * 5 4 3 24 24 C 1.50699 * 120.03359 * 180.02562 * 23 5 4 25 25 C 1.38128 * 119.93144 * 0.02562 * 23 5 4 26 26 H 1.09002 * 109.47008 * 269.97928 * 1 2 3 27 27 H 1.09004 * 109.47247 * 29.97792 * 1 2 3 28 28 H 1.09004 * 109.47129 * 149.97689 * 1 2 3 29 29 H 1.08000 * 119.95993 * 0.04426 * 3 2 1 30 30 H 1.08002 * 120.03432 * 180.02562 * 4 3 2 31 31 H 0.96989 * 120.00320 * 132.56027 * 6 5 4 32 32 H 0.96997 * 119.99720 * 180.02562 * 9 7 6 33 33 H 0.96998 * 119.99875 * 359.97438 * 10 9 7 34 34 H 1.09002 * 109.46960 * 300.00025 * 13 11 10 35 35 H 1.09000 * 109.46585 * 59.99835 * 13 11 10 36 36 H 0.97006 * 119.99868 * 179.97438 * 18 17 15 37 37 H 1.09002 * 109.46982 * 90.00396 * 24 23 5 38 38 H 1.09002 * 109.47376 * 210.00201 * 24 23 5 39 39 H 1.08996 * 109.47348 * 330.00664 * 24 23 5 40 40 H 1.07994 * 119.96868 * 179.97438 * 25 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1970 1.1986 0.0000 4 6 3.5779 1.2021 -0.0005 5 6 4.2739 0.0001 -0.0016 6 7 5.6728 0.0000 0.0033 7 6 6.3497 0.7919 -0.8519 8 16 5.5008 1.8787 -1.8665 9 7 7.6947 0.7283 -0.9082 10 7 8.3893 -0.1613 -0.0782 11 6 9.7344 -0.2253 -0.1349 12 8 10.3434 0.4869 -0.9048 13 6 10.4816 -1.1818 0.7583 14 16 12.2587 -1.0334 0.4486 15 6 12.8693 -2.2273 1.5915 16 1 12.1811 -2.7825 2.2116 17 6 14.2347 -2.4535 1.6956 18 7 14.6907 -3.3458 2.5492 19 14 15.4251 -1.4927 0.6236 20 1 15.8294 -0.2480 1.3256 21 1 16.6273 -2.3214 0.3534 22 1 14.7648 -1.1448 -0.6602 23 6 3.5781 -1.2017 -0.0016 24 6 4.3292 -2.5082 -0.0022 25 6 2.1968 -1.1983 -0.0011 26 1 -0.3633 -0.0004 1.0277 27 1 -0.3634 0.8902 -0.5135 28 1 -0.3633 -0.8898 -0.5142 29 1 1.6552 2.1329 0.0007 30 1 4.1161 2.1384 -0.0001 31 1 6.1556 -0.5699 0.6220 32 1 8.1818 1.2985 -1.5234 33 1 7.9022 -0.7312 0.5373 34 1 10.2730 -0.9432 1.8013 35 1 10.1603 -2.2018 0.5477 36 1 15.6450 -3.5042 2.6217 37 1 4.5106 -2.8234 1.0254 38 1 3.7385 -3.2667 -0.5160 39 1 5.2816 -2.3795 -0.5162 40 1 1.6550 -2.1326 -0.0015 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873758858.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:36 Heat of formation + Delta-G solvation = 24.293260 kcal Electronic energy + Delta-G solvation = -23228.514064 eV Core-core repulsion = 19682.330360 eV Total energy + Delta-G solvation = -3546.183703 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 339.082 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.97078 -40.96019 -39.26896 -36.78617 -34.68020 -34.29160 -33.51358 -32.22776 -30.55389 -28.14145 -27.87574 -27.27879 -25.23148 -23.43644 -22.85689 -21.68333 -20.76270 -20.02474 -19.54899 -18.30916 -17.45906 -17.25075 -17.18114 -17.08303 -16.63301 -16.08005 -15.94376 -15.42484 -15.28801 -14.89220 -14.86974 -14.74912 -14.12193 -14.04581 -13.91620 -13.42399 -13.36901 -13.09396 -13.03252 -12.86185 -12.75195 -12.58688 -12.27200 -12.20814 -11.91114 -11.90512 -11.57136 -11.18329 -10.57738 -10.46677 -9.81652 -9.26230 -9.11984 -9.01935 -8.55821 -8.52436 -6.23975 -0.30774 -0.16498 0.43229 0.54410 0.77817 1.08493 1.17904 1.31155 1.40125 1.47028 1.61177 2.22377 2.54724 2.77138 2.86576 2.89996 3.49529 3.82975 3.91379 4.07388 4.13100 4.26397 4.37711 4.38708 4.42718 4.63978 4.64616 4.74379 4.90230 4.91481 4.93781 5.09544 5.21575 5.26580 5.38781 5.49544 5.58395 5.70030 5.73676 5.80799 5.92677 6.12521 6.14167 6.72927 6.93099 8.59214 Molecular weight = 339.08amu Principal moments of inertia in cm(-1) A = 0.023749 B = 0.002135 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.726991 B =13112.085952 C =14053.905162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.075 4.075 3 C -0.135 4.135 4 C -0.073 4.073 5 C 0.092 3.908 6 N -0.607 5.607 7 C 0.580 3.420 8 S -0.655 6.655 9 N -0.455 5.455 10 N -0.529 5.529 11 C 0.549 3.451 12 O -0.538 6.538 13 C -0.104 4.104 14 S -0.168 6.168 15 C -0.527 4.527 16 H 0.071 0.929 17 C 0.047 3.953 18 N -0.914 5.914 19 Si 0.909 3.091 20 H -0.264 1.264 21 H -0.263 1.263 22 H -0.235 1.235 23 C -0.079 4.079 24 C -0.121 4.121 25 C -0.127 4.127 26 H 0.082 0.918 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.135 0.865 30 H 0.128 0.872 31 H 0.418 0.582 32 H 0.458 0.542 33 H 0.440 0.560 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.276 0.724 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.059 0.941 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.319 2.120 -1.318 28.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.075 4.075 3 C -0.154 4.154 4 C -0.094 4.094 5 C -0.001 4.001 6 N -0.236 5.236 7 C 0.217 3.783 8 S -0.527 6.527 9 N -0.182 5.182 10 N -0.283 5.283 11 C 0.335 3.665 12 O -0.411 6.411 13 C -0.256 4.256 14 S 0.059 5.941 15 C -0.674 4.674 16 H 0.089 0.911 17 C -0.159 4.159 18 N -0.552 5.552 19 Si 0.731 3.269 20 H -0.189 1.189 21 H -0.188 1.188 22 H -0.159 1.159 23 C -0.082 4.082 24 C -0.177 4.177 25 C -0.145 4.145 26 H 0.101 0.899 27 H 0.089 0.911 28 H 0.096 0.904 29 H 0.153 0.847 30 H 0.146 0.854 31 H 0.260 0.740 32 H 0.308 0.692 33 H 0.285 0.715 34 H 0.151 0.849 35 H 0.152 0.848 36 H 0.086 0.914 37 H 0.111 0.889 38 H 0.103 0.897 39 H 0.078 0.922 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -27.609 3.754 -3.054 28.030 hybrid contribution 1.067 -1.265 1.443 2.195 sum -26.542 2.489 -1.611 26.707 Atomic orbital electron populations 1.20861 0.89295 1.03660 1.03286 1.20315 0.97577 0.92737 0.96885 1.21053 0.93033 0.98784 1.02542 1.21370 0.94987 0.97631 0.95445 1.17286 0.79277 0.94564 1.08937 1.41930 1.06248 1.40752 1.34620 1.22063 0.82426 0.87492 0.86315 1.93808 1.65961 1.42863 1.50118 1.44716 1.00992 1.35811 1.36655 1.45259 1.04655 1.38755 1.39615 1.20428 0.79850 0.83134 0.83098 1.90798 1.67361 1.43511 1.39424 1.23197 0.96757 1.02468 1.03190 1.84915 1.00532 1.54294 1.54399 1.22430 0.95901 1.24627 1.24484 0.91068 1.25498 0.99275 0.95259 0.95843 1.70006 1.15563 1.33608 1.35982 0.85947 0.80014 0.79471 0.81447 1.18901 1.18755 1.15909 1.19979 0.94557 0.93836 0.99780 1.20876 0.99795 0.93220 1.03812 1.20995 0.92338 0.98750 1.02458 0.89911 0.91058 0.90429 0.84747 0.85419 0.74049 0.69183 0.71461 0.84903 0.84820 0.91416 0.88899 0.89737 0.92239 0.83411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 10.01 71.23 0.71 -0.23 16 2 C -0.07 -1.02 5.88 -19.84 -0.12 -1.13 16 3 C -0.13 -2.26 9.69 22.25 0.22 -2.04 16 4 C -0.07 -1.45 7.89 22.39 0.18 -1.27 16 5 C 0.09 1.59 5.85 38.16 0.22 1.81 16 6 N -0.61 -9.02 4.38 -189.98 -0.83 -9.85 16 7 C 0.58 11.99 7.84 179.06 1.40 13.39 16 8 S -0.65 -19.11 26.56 -56.49 -1.50 -20.61 16 9 N -0.46 -9.09 6.26 -59.11 -0.37 -9.46 16 10 N -0.53 -8.92 6.26 -173.53 -1.09 -10.01 16 11 C 0.55 14.37 7.96 87.66 0.70 15.07 16 12 O -0.54 -18.95 15.70 -3.03 -0.05 -19.00 16 13 C -0.10 -2.97 6.16 71.24 0.44 -2.53 16 14 S -0.17 -7.41 18.55 -56.49 -1.05 -8.46 16 15 C -0.53 -27.76 10.04 67.95 0.68 -27.08 16 16 H 0.07 3.90 8.03 -2.91 -0.02 3.88 16 17 C 0.05 2.59 5.50 84.86 0.47 3.05 16 18 N -0.91 -52.63 13.97 21.65 0.30 -52.33 16 19 Si 0.91 42.30 27.74 68.60 1.90 44.21 16 20 H -0.26 -12.10 7.11 99.48 0.71 -11.40 16 21 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 22 H -0.24 -10.84 6.74 99.48 0.67 -10.17 16 23 C -0.08 -1.10 5.90 -19.74 -0.12 -1.22 16 24 C -0.12 -1.08 9.59 71.24 0.68 -0.40 16 25 C -0.13 -1.61 9.35 22.25 0.21 -1.40 16 26 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.07 0.56 8.08 -2.39 -0.02 0.54 16 28 H 0.08 0.48 8.08 -2.39 -0.02 0.46 16 29 H 0.13 1.89 8.06 -2.91 -0.02 1.87 16 30 H 0.13 2.97 6.31 -4.70 -0.03 2.95 16 31 H 0.42 3.45 6.39 -92.72 -0.59 2.86 16 32 H 0.46 10.58 7.98 -213.32 -1.70 8.88 16 33 H 0.44 3.76 6.71 -213.32 -1.43 2.33 16 34 H 0.13 3.21 8.14 -2.39 -0.02 3.19 16 35 H 0.13 3.22 8.14 -2.40 -0.02 3.20 16 36 H 0.28 14.83 8.31 -92.70 -0.77 14.06 16 37 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.08 0.64 8.09 -2.39 -0.02 0.62 16 39 H 0.06 0.57 7.39 -2.39 -0.02 0.56 16 40 H 0.15 1.18 8.06 -2.91 -0.02 1.15 16 Total: -1.00 -74.84 366.08 0.33 -74.51 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -2.67 Total: 14.99 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: 5.68 Total: -3.98 kcal Atomic # 7 Polarization: -79.67 SS G_CDS: -1.99 Total: -81.65 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -0.05 Total: -19.00 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 1.90 Total: 44.21 kcal Atomic # 16 Polarization: -26.52 SS G_CDS: -2.55 Total: -29.07 kcal Total: -74.84 0.33 -74.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873758858.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.805 kcal (2) G-P(sol) polarization free energy of solvation -74.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds