Wall clock time and date at job start Tue Mar 31 2020 22:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86804 * 120.00134 * 2 1 4 4 H 1.48495 * 109.47205 * 270.00676 * 3 2 1 5 5 H 1.48502 * 109.46622 * 30.00212 * 3 2 1 6 6 H 1.48499 * 109.47287 * 150.00298 * 3 2 1 7 7 C 1.38654 * 120.00240 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00051 * 359.97438 * 7 2 1 9 9 O 1.34831 * 120.00224 * 180.02562 * 7 2 1 10 10 C 1.35748 * 116.99950 * 174.58991 * 9 7 2 11 11 C 1.38958 * 120.02940 * 174.08001 * 10 9 7 12 12 C 1.38131 * 120.06562 * 180.02562 * 11 10 9 13 13 C 1.38194 * 120.14413 * 359.97438 * 12 11 10 14 14 C 1.38931 * 120.06512 * 0.28156 * 13 12 11 15 15 N 1.39924 * 120.03626 * 179.70226 * 14 13 12 16 16 C 1.34769 * 120.00040 * 326.30226 * 15 14 13 17 17 O 1.21291 * 120.00245 * 354.79666 * 16 15 14 18 18 C 1.50701 * 120.00089 * 174.79566 * 16 15 14 19 19 C 1.53006 * 109.47327 * 179.97438 * 18 16 15 20 20 H 1.08999 * 110.27804 * 54.29501 * 19 18 16 21 21 C 1.54153 * 110.31880 * 176.41236 * 19 18 16 22 22 C 1.53878 * 108.70351 * 146.81301 * 21 19 18 23 23 C 1.55048 * 106.62215 * 312.81797 * 22 21 19 24 24 S 1.82911 * 110.31651 * 292.18671 * 19 18 16 25 25 O 1.42098 * 109.35901 * 352.36813 * 24 19 18 26 26 O 1.42103 * 109.35654 * 125.57646 * 24 19 18 27 27 C 1.38729 * 120.03802 * 354.10253 * 10 9 7 28 28 H 0.96996 * 120.00036 * 359.97438 * 1 2 3 29 29 H 1.07992 * 119.96640 * 359.97438 * 11 10 9 30 30 H 1.08004 * 119.92543 * 179.97438 * 12 11 10 31 31 H 1.07992 * 119.96940 * 180.02562 * 13 12 11 32 32 H 0.96998 * 119.99559 * 146.30046 * 15 14 13 33 33 H 1.08994 * 109.46815 * 299.99674 * 18 16 15 34 34 H 1.08993 * 109.46981 * 60.00011 * 18 16 15 35 35 H 1.08998 * 109.65088 * 266.66448 * 21 19 18 36 36 H 1.09005 * 109.65115 * 26.96091 * 21 19 18 37 37 H 1.08999 * 110.03217 * 72.11375 * 22 21 19 38 38 H 1.09004 * 110.03178 * 193.48429 * 22 21 19 39 39 H 1.08998 * 110.79129 * 160.70193 * 23 22 21 40 40 H 1.09003 * 110.78832 * 283.97457 * 23 22 21 41 41 H 1.08001 * 120.06719 * 359.97438 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4970 2.0465 -1.4000 5 1 1.4470 2.6526 0.7001 6 1 3.5472 1.4402 0.7000 7 6 2.0089 -1.2008 -0.0005 8 1 1.4689 -2.1361 -0.0005 9 8 3.3572 -1.2008 0.0000 10 6 3.9734 -2.4050 0.1135 11 6 5.3554 -2.4926 -0.0024 12 6 5.9831 -3.7176 0.1124 13 6 5.2397 -4.8595 0.3432 14 6 3.8572 -4.7792 0.4547 15 7 3.1045 -5.9366 0.6823 16 6 3.4995 -7.1119 0.1542 17 8 4.4527 -7.1505 -0.5948 18 6 2.7568 -8.3784 0.4942 19 6 3.4036 -9.5597 -0.2318 20 1 4.4691 -9.6043 -0.0060 21 6 2.7150 -10.8783 0.1722 22 6 2.7288 -11.8323 -1.0351 23 6 2.2529 -11.0066 -2.2582 24 16 3.1423 -9.4162 -2.0364 25 8 2.2539 -8.3388 -2.2996 26 8 4.3969 -9.4802 -2.7006 27 6 3.2242 -3.5494 0.3447 28 1 -0.4850 0.8400 0.0004 29 1 5.9391 -1.6022 -0.1832 30 1 7.0574 -3.7832 0.0216 31 1 5.7335 -5.8157 0.4329 32 1 2.2985 -5.8929 1.2201 33 1 2.7983 -8.5460 1.5704 34 1 1.7170 -8.2850 0.1809 35 1 3.2528 -11.3327 1.0043 36 1 1.6856 -10.6782 0.4694 37 1 3.7392 -12.2039 -1.2059 38 1 2.0493 -12.6663 -0.8598 39 1 2.5500 -11.4886 -3.1896 40 1 1.1735 -10.8581 -2.2283 41 1 2.1500 -3.4838 0.4352 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874069655.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:15 Heat of formation + Delta-G solvation = -132.298745 kcal Electronic energy + Delta-G solvation = -26983.433048 eV Core-core repulsion = 22955.413383 eV Total energy + Delta-G solvation = -4028.019664 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.74181 -40.56711 -38.44795 -38.04833 -37.50499 -36.91739 -35.78067 -34.42948 -33.33888 -31.15515 -30.50316 -28.24386 -27.20464 -25.40146 -23.47242 -23.39660 -22.23416 -21.45440 -19.97082 -19.65726 -19.41074 -18.36471 -18.13925 -17.60575 -17.17437 -16.98755 -16.54038 -16.49795 -16.09207 -15.74275 -15.53226 -15.45245 -15.10962 -14.81908 -14.66858 -14.42585 -14.21615 -14.05668 -13.65922 -13.34790 -13.16469 -13.04450 -12.96104 -12.87661 -12.76992 -12.70503 -12.56722 -12.43316 -12.09863 -11.77838 -11.61222 -11.50547 -11.34303 -11.09113 -10.96230 -10.83574 -9.45255 -8.98482 -8.51174 -6.24410 -0.90165 0.30953 0.59951 1.31926 1.36011 1.45548 1.52149 1.70341 1.94080 2.28011 2.74042 2.75145 2.95123 3.06079 3.08071 3.33441 3.46722 3.65721 3.86808 3.91235 4.08360 4.12723 4.25428 4.26952 4.37118 4.51781 4.53220 4.58052 4.65613 4.70896 4.79362 4.87075 5.07438 5.13813 5.22416 5.30672 5.33198 5.43077 5.57954 5.71761 5.85790 6.16065 6.33379 6.82806 6.96792 7.54950 8.60277 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.020403 B = 0.002647 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.015771 B =10575.896287 C =11123.905869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.013 3.987 3 Si 0.970 3.030 4 H -0.268 1.268 5 H -0.266 1.266 6 H -0.261 1.261 7 C -0.401 4.401 8 H 0.080 0.920 9 O -0.238 6.238 10 C 0.140 3.860 11 C -0.202 4.202 12 C -0.054 4.054 13 C -0.195 4.195 14 C 0.178 3.822 15 N -0.659 5.659 16 C 0.497 3.503 17 O -0.568 6.568 18 C -0.115 4.115 19 C -0.520 4.520 20 H 0.150 0.850 21 C -0.107 4.107 22 C -0.123 4.123 23 C -0.566 4.566 24 S 2.337 3.663 25 O -0.988 6.988 26 O -0.991 6.991 27 C -0.256 4.256 28 H 0.285 0.715 29 H 0.136 0.864 30 H 0.160 0.840 31 H 0.133 0.867 32 H 0.426 0.574 33 H 0.168 0.832 34 H 0.135 0.865 35 H 0.124 0.876 36 H 0.115 0.885 37 H 0.091 0.909 38 H 0.133 0.867 39 H 0.146 0.854 40 H 0.161 0.839 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.692 -28.006 5.244 28.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.186 4.186 3 Si 0.792 3.208 4 H -0.193 1.193 5 H -0.190 1.190 6 H -0.185 1.185 7 C -0.477 4.477 8 H 0.098 0.902 9 O -0.145 6.145 10 C 0.090 3.910 11 C -0.221 4.221 12 C -0.073 4.073 13 C -0.215 4.215 14 C 0.083 3.917 15 N -0.304 5.304 16 C 0.287 3.713 17 O -0.447 6.447 18 C -0.155 4.155 19 C -0.634 4.634 20 H 0.168 0.832 21 C -0.145 4.145 22 C -0.161 4.161 23 C -0.699 4.699 24 S 2.528 3.472 25 O -0.985 6.985 26 O -0.988 6.988 27 C -0.278 4.278 28 H 0.095 0.905 29 H 0.154 0.846 30 H 0.178 0.822 31 H 0.151 0.849 32 H 0.265 0.735 33 H 0.185 0.815 34 H 0.153 0.847 35 H 0.143 0.857 36 H 0.133 0.867 37 H 0.110 0.890 38 H 0.152 0.848 39 H 0.164 0.836 40 H 0.179 0.821 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 4.499 -27.002 4.038 27.670 hybrid contribution -0.690 0.657 0.228 0.980 sum 3.809 -26.344 4.266 26.958 Atomic orbital electron populations 1.69719 1.06860 1.29663 1.49852 1.25267 0.95885 1.02112 0.95355 0.85224 0.78902 0.77400 0.79240 1.19309 1.19048 1.18519 1.20684 0.77998 0.96124 1.52878 0.90212 1.83550 1.21340 1.26852 1.82802 1.19366 0.92872 0.84804 0.93995 1.20562 0.90672 0.99851 1.11029 1.21004 1.00778 0.90047 0.95431 1.20961 0.91680 0.99744 1.09163 1.17544 0.91172 0.85321 0.97634 1.43445 1.28643 1.06040 1.52279 1.21832 0.84439 0.86353 0.78668 1.90768 1.30530 1.87036 1.36391 1.21622 1.01060 0.86083 1.06753 1.29943 1.10706 1.03104 1.19600 0.83233 1.22224 1.03621 0.88607 1.00097 1.22414 1.04816 0.99429 0.89469 1.30575 1.14185 1.16464 1.08725 1.10398 0.75929 0.79668 0.81191 1.93540 1.66347 1.54026 1.84628 1.93519 1.43511 1.87941 1.73794 1.20937 1.00457 0.92280 1.14124 0.90502 0.84612 0.82213 0.84878 0.73538 0.81465 0.84741 0.85727 0.86655 0.89042 0.84847 0.83636 0.82126 0.86149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.02 13.96 21.61 0.30 -54.72 16 2 C 0.01 0.73 5.49 84.83 0.47 1.20 16 3 Si 0.97 45.76 28.62 68.60 1.96 47.72 16 4 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 5 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 6 H -0.26 -12.25 7.11 99.48 0.71 -11.54 16 7 C -0.40 -23.84 9.90 67.92 0.67 -23.17 16 8 H 0.08 4.96 5.53 -2.91 -0.02 4.95 16 9 O -0.24 -13.18 8.58 -22.73 -0.20 -13.37 16 10 C 0.14 6.81 6.64 22.56 0.15 6.96 16 11 C -0.20 -8.21 9.99 22.42 0.22 -7.98 16 12 C -0.05 -1.91 10.03 22.23 0.22 -1.68 16 13 C -0.19 -7.25 8.65 22.43 0.19 -7.06 16 14 C 0.18 6.95 6.27 38.14 0.24 7.19 16 15 N -0.66 -19.79 5.34 -303.55 -1.62 -21.41 16 16 C 0.50 14.01 6.84 87.66 0.60 14.61 16 17 O -0.57 -20.94 12.72 -3.06 -0.04 -20.98 16 18 C -0.12 -1.61 4.73 29.85 0.14 -1.47 16 19 C -0.52 -6.80 2.77 30.99 0.09 -6.71 16 20 H 0.15 2.09 7.96 -2.39 -0.02 2.07 16 21 C -0.11 -0.23 5.94 31.28 0.19 -0.05 16 22 C -0.12 -0.33 6.48 31.59 0.20 -0.12 16 23 C -0.57 -4.97 7.32 72.68 0.53 -4.44 16 24 S 2.34 53.62 4.84 -56.49 -0.27 53.35 16 25 O -0.99 -32.04 16.54 -127.49 -2.11 -34.15 16 26 O -0.99 -33.16 18.15 -127.49 -2.31 -35.47 16 27 C -0.26 -11.78 9.04 22.51 0.20 -11.57 16 28 H 0.29 15.62 8.31 -92.71 -0.77 14.85 16 29 H 0.14 4.98 8.06 -2.91 -0.02 4.96 16 30 H 0.16 4.28 8.06 -2.91 -0.02 4.25 16 31 H 0.13 4.68 6.44 -2.91 -0.02 4.66 16 32 H 0.43 9.71 8.82 -92.71 -0.82 8.89 16 33 H 0.17 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.13 1.45 7.79 -2.39 -0.02 1.43 16 35 H 0.12 -0.26 8.14 -2.39 -0.02 -0.28 16 36 H 0.12 -0.27 7.86 -2.38 -0.02 -0.28 16 37 H 0.09 0.23 8.14 -2.39 -0.02 0.21 16 38 H 0.13 -0.37 8.14 -2.39 -0.02 -0.39 16 39 H 0.15 1.07 8.14 -2.39 -0.02 1.06 16 40 H 0.16 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.12 5.85 5.71 -2.91 -0.02 5.83 16 Total: -1.00 -93.80 353.56 0.10 -93.70 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: 0.26 Total: 19.64 kcal Atomic # 6 Polarization: -38.42 SS G_CDS: 4.12 Total: -34.30 kcal Atomic # 7 Polarization: -74.81 SS G_CDS: -1.32 Total: -76.13 kcal Atomic # 8 Polarization: -99.32 SS G_CDS: -4.66 Total: -103.98 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 1.96 Total: 47.72 kcal Atomic # 16 Polarization: 53.62 SS G_CDS: -0.27 Total: 53.35 kcal Total: -93.80 0.10 -93.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874069655.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.595 kcal (2) G-P(sol) polarization free energy of solvation -93.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds