Wall clock time and date at job start Tue Mar 31 2020 22:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 112.52315 * 2 1 4 4 C 1.53053 * 113.14862 * 129.79579 * 2 1 3 5 5 H 1.08996 * 113.14825 * 263.45103 * 4 2 1 6 6 N 1.46499 * 113.15004 * 32.90199 * 4 2 1 7 7 C 1.34777 * 120.00100 * 204.88434 * 6 4 2 8 8 O 1.21594 * 119.99750 * 359.97438 * 7 6 4 9 9 C 1.47530 * 119.99929 * 180.02562 * 7 6 4 10 10 C 1.39666 * 120.19989 * 0.02562 * 9 7 6 11 11 C 1.37826 * 119.91765 * 179.70202 * 10 9 7 12 12 C 1.38566 * 120.32520 * 0.24598 * 11 10 9 13 13 C 1.38025 * 120.40553 * 0.05418 * 12 11 10 14 14 C 1.38840 * 120.06807 * 359.96921 * 13 12 11 15 15 O 1.35512 * 120.15909 * 180.02562 * 14 13 12 16 16 C 1.34814 * 117.00293 * 354.39495 * 15 14 13 17 17 H 1.07999 * 120.00047 * 5.06189 * 16 15 14 18 18 C 1.38699 * 120.00125 * 185.05509 * 16 15 14 19 19 N 1.31520 * 119.99742 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 120.00101 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.46829 * 89.99653 * 20 18 16 22 22 H 1.48494 * 109.46879 * 209.99715 * 20 18 16 23 23 H 1.48498 * 109.46830 * 329.99831 * 20 18 16 24 24 C 1.53043 * 89.90997 * 148.17894 * 4 2 1 25 25 S 1.81424 * 113.15085 * 230.19318 * 2 1 3 26 26 O 1.42104 * 112.75456 * 324.27057 * 25 2 1 27 27 O 1.42103 * 112.75142 * 107.92516 * 25 2 1 28 28 H 1.09003 * 109.47460 * 290.20175 * 1 2 3 29 29 H 1.08996 * 109.47285 * 50.20617 * 1 2 3 30 30 H 1.09005 * 109.47498 * 170.20442 * 1 2 3 31 31 H 1.09001 * 109.47455 * 189.80002 * 3 2 1 32 32 H 1.09000 * 109.46816 * 309.79333 * 3 2 1 33 33 H 1.08994 * 109.47249 * 69.79752 * 3 2 1 34 34 H 0.97006 * 119.99979 * 24.88170 * 6 4 2 35 35 H 1.08001 * 120.04055 * 359.96588 * 10 9 7 36 36 H 1.08005 * 119.83652 * 180.27191 * 11 10 9 37 37 H 1.08009 * 119.79903 * 180.02562 * 12 11 10 38 38 H 1.08001 * 119.96817 * 179.97438 * 13 12 11 39 39 H 0.97008 * 120.00097 * 180.02562 * 19 18 16 40 40 H 1.08994 * 113.14912 * 82.34263 * 24 4 2 41 41 H 1.09003 * 113.14151 * 211.82812 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1160 1.4133 0.0000 4 6 2.1316 -0.9008 1.0813 5 1 2.4051 -0.3592 1.9867 6 7 1.3181 -2.0865 1.3614 7 6 1.4027 -2.6935 2.5618 8 8 2.1545 -2.2573 3.4120 9 6 0.5839 -3.8879 2.8437 10 6 -0.2799 -4.3934 1.8695 11 6 -1.0377 -5.5132 2.1369 12 6 -0.9510 -6.1384 3.3705 13 6 -0.1064 -5.6466 4.3451 14 6 0.6641 -4.5193 4.0937 15 8 1.4943 -4.0351 5.0491 16 6 1.4412 -4.6227 6.2613 17 1 0.8188 -5.4922 6.4131 18 6 2.1859 -4.1107 7.3134 19 7 2.1336 -4.6837 8.4960 20 14 3.2621 -2.6066 7.0510 21 1 2.4758 -1.3796 7.3366 22 1 4.4313 -2.6691 7.9643 23 1 3.7344 -2.5754 5.6435 24 6 3.3264 -1.1921 0.1703 25 16 2.2432 -1.0679 -1.2815 26 8 1.4812 -2.2471 -1.5011 27 8 2.8301 -0.3321 -2.3461 28 1 -0.3634 0.3549 0.9644 29 1 -0.3633 0.6577 -0.7896 30 1 -0.3634 -1.0127 -0.1748 31 1 3.1906 1.3611 -0.1749 32 1 1.6476 2.0008 -0.7896 33 1 1.9274 1.8849 0.9644 34 1 0.7185 -2.4347 0.6830 35 1 -0.3508 -3.9100 0.9064 36 1 -1.7019 -5.9056 1.3811 37 1 -1.5484 -7.0157 3.5708 38 1 -0.0447 -6.1392 5.3043 39 1 2.6542 -4.3255 9.2320 40 1 4.0897 -0.4149 0.2030 41 1 3.7403 -2.1904 0.3129 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880392703.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:36 Heat of formation + Delta-G solvation = -97.804376 kcal Electronic energy + Delta-G solvation = -27974.968575 eV Core-core repulsion = 23948.444699 eV Total energy + Delta-G solvation = -4026.523876 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.63127 -40.51760 -38.79674 -38.41818 -38.14623 -37.17079 -34.58265 -34.43546 -32.31869 -31.23158 -30.81668 -28.29507 -27.30997 -25.38359 -24.12108 -23.05658 -22.32488 -21.73030 -19.90803 -19.82749 -19.26207 -18.16697 -17.87482 -17.50491 -16.96286 -16.80954 -16.53619 -16.24385 -15.98395 -15.74623 -15.50716 -15.44945 -14.80702 -14.55589 -14.38743 -14.24713 -14.17147 -14.06257 -13.90856 -13.46823 -13.38154 -13.29933 -13.15624 -13.08740 -12.85266 -12.61413 -12.41581 -12.37994 -12.34914 -12.03007 -11.56303 -11.43745 -10.97734 -10.96020 -10.82583 -10.36784 -9.90083 -9.17614 -8.58314 -6.27568 -0.94244 0.00108 0.62829 0.90975 1.25000 1.29709 1.57455 1.86478 1.91449 2.28636 2.55396 2.73904 2.95521 2.97867 3.08139 3.17362 3.53748 3.74990 3.79933 3.91372 4.00254 4.18002 4.23458 4.46128 4.48863 4.58886 4.64147 4.70506 4.73107 4.79207 4.86091 4.89172 5.03691 5.18349 5.24641 5.26848 5.33260 5.46405 5.59343 5.68003 5.81939 6.13229 6.41391 6.78078 7.23569 7.56309 8.51988 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.013966 B = 0.004008 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.318361 B = 6984.505169 C = 8432.470002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.510 4.510 3 C -0.117 4.117 4 C 0.157 3.843 5 H 0.123 0.877 6 N -0.715 5.715 7 C 0.566 3.434 8 O -0.559 6.559 9 C -0.237 4.237 10 C -0.034 4.034 11 C -0.189 4.189 12 C -0.039 4.039 13 C -0.249 4.249 14 C 0.165 3.835 15 O -0.207 6.207 16 C -0.404 4.404 17 H 0.092 0.908 18 C 0.026 3.974 19 N -0.911 5.911 20 Si 0.957 3.043 21 H -0.275 1.275 22 H -0.267 1.267 23 H -0.263 1.263 24 C -0.609 4.609 25 S 2.412 3.588 26 O -0.930 6.930 27 O -0.941 6.941 28 H 0.077 0.923 29 H 0.098 0.902 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.415 0.585 35 H 0.159 0.841 36 H 0.166 0.834 37 H 0.153 0.847 38 H 0.117 0.883 39 H 0.286 0.714 40 H 0.179 0.821 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.316 9.240 -22.478 24.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.601 4.601 3 C -0.175 4.175 4 C 0.049 3.951 5 H 0.141 0.859 6 N -0.372 5.372 7 C 0.356 3.644 8 O -0.437 6.437 9 C -0.241 4.241 10 C -0.052 4.052 11 C -0.207 4.207 12 C -0.057 4.057 13 C -0.269 4.269 14 C 0.112 3.888 15 O -0.111 6.111 16 C -0.480 4.480 17 H 0.109 0.891 18 C -0.175 4.175 19 N -0.551 5.551 20 Si 0.780 3.220 21 H -0.201 1.201 22 H -0.192 1.192 23 H -0.187 1.187 24 C -0.739 4.739 25 S 2.594 3.406 26 O -0.927 6.927 27 O -0.938 6.938 28 H 0.096 0.904 29 H 0.116 0.884 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.112 0.888 33 H 0.099 0.901 34 H 0.256 0.744 35 H 0.177 0.823 36 H 0.183 0.817 37 H 0.170 0.830 38 H 0.135 0.865 39 H 0.096 0.904 40 H 0.196 0.804 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.684 9.323 -22.787 24.895 hybrid contribution 0.470 0.190 1.755 1.827 sum -3.214 9.513 -21.032 23.306 Atomic orbital electron populations 1.21727 0.88787 1.04057 1.05557 1.30668 1.07350 1.10109 1.12017 1.21506 1.01650 0.89257 1.05114 1.20771 0.88449 0.85840 1.00069 0.85872 1.45719 1.45833 1.29652 1.15959 1.18291 0.81401 0.83134 0.81534 1.90849 1.40077 1.65814 1.46990 1.19187 1.08528 1.01398 0.95033 1.21361 0.91612 0.95208 0.97015 1.21227 1.03750 0.97723 0.98020 1.21457 0.93902 0.98223 0.92101 1.21345 1.03574 0.99435 1.02497 1.19707 0.88387 0.92070 0.88641 1.83750 1.52980 1.55061 1.19282 1.20897 1.29577 1.13028 0.84500 0.89066 1.25061 0.98204 1.00762 0.93426 1.69687 1.41898 1.42030 1.01447 0.85394 0.78666 0.78893 0.79001 1.20086 1.19211 1.18725 1.31470 1.12063 1.12586 1.17793 1.08838 0.79032 0.76552 0.76151 1.93642 1.67955 1.44875 1.86244 1.93589 1.75068 1.71429 1.53691 0.90441 0.88362 0.90978 0.90053 0.88807 0.90089 0.74359 0.82334 0.81664 0.82971 0.86494 0.90437 0.80375 0.85566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 8.63 71.98 0.62 -1.12 16 2 C -0.51 -7.15 1.29 -10.78 -0.01 -7.16 16 3 C -0.12 -1.20 8.76 71.98 0.63 -0.57 16 4 C 0.16 3.39 3.46 45.02 0.16 3.54 16 5 H 0.12 3.13 7.46 -2.39 -0.02 3.11 16 6 N -0.71 -18.99 4.49 -478.03 -2.15 -21.14 16 7 C 0.57 21.85 7.76 86.69 0.67 22.53 16 8 O -0.56 -27.20 14.77 16.88 0.25 -26.95 16 9 C -0.24 -9.24 5.89 -19.99 -0.12 -9.35 16 10 C -0.03 -0.94 9.53 22.52 0.21 -0.73 16 11 C -0.19 -4.78 10.02 22.25 0.22 -4.56 16 12 C -0.04 -1.17 10.03 22.30 0.22 -0.95 16 13 C -0.25 -10.46 9.16 22.36 0.20 -10.25 16 14 C 0.17 7.88 6.66 22.91 0.15 8.03 16 15 O -0.21 -11.80 6.67 0.92 0.01 -11.79 16 16 C -0.40 -24.32 9.95 67.93 0.68 -23.65 16 17 H 0.09 5.56 5.44 -2.91 -0.02 5.55 16 18 C 0.03 1.55 5.49 84.85 0.47 2.01 16 19 N -0.91 -55.13 13.96 21.62 0.30 -54.82 16 20 Si 0.96 49.72 28.62 68.60 1.96 51.69 16 21 H -0.28 -14.06 7.11 99.48 0.71 -13.36 16 22 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 23 H -0.26 -14.56 7.11 99.48 0.71 -13.85 16 24 C -0.61 -10.25 7.41 72.00 0.53 -9.71 16 25 S 2.41 38.25 6.81 -56.49 -0.38 37.86 16 26 O -0.93 -18.77 16.12 -127.87 -2.06 -20.83 16 27 O -0.94 -18.77 17.87 -127.87 -2.29 -21.05 16 28 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.07 0.85 6.38 -2.38 -0.02 0.84 16 31 H 0.08 0.68 6.83 -2.39 -0.02 0.67 16 32 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.42 8.86 3.88 -92.70 -0.36 8.50 16 35 H 0.16 3.14 6.40 -2.91 -0.02 3.12 16 36 H 0.17 2.71 8.06 -2.91 -0.02 2.68 16 37 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 38 H 0.12 5.36 5.64 -2.91 -0.02 5.34 16 39 H 0.29 15.92 8.31 -92.70 -0.77 15.15 16 40 H 0.18 2.02 7.12 -2.39 -0.02 2.00 16 41 H 0.13 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -83.32 348.96 1.01 -82.31 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: 0.73 Total: 16.67 kcal Atomic # 6 Polarization: -36.59 SS G_CDS: 4.64 Total: -31.95 kcal Atomic # 7 Polarization: -74.11 SS G_CDS: -1.85 Total: -75.96 kcal Atomic # 8 Polarization: -76.53 SS G_CDS: -4.09 Total: -80.62 kcal Atomic # 14 Polarization: 49.72 SS G_CDS: 1.96 Total: 51.69 kcal Atomic # 16 Polarization: 38.25 SS G_CDS: -0.38 Total: 37.86 kcal Total: -83.32 1.01 -82.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880392703.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.497 kcal (2) G-P(sol) polarization free energy of solvation -83.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds