Wall clock time and date at job start Tue Mar 31 2020 22:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86800 * 120.00156 * 2 1 4 4 H 1.48499 * 109.47140 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47059 * 300.00339 * 3 2 1 6 6 H 1.48499 * 109.46962 * 60.00300 * 3 2 1 7 7 C 1.40027 * 119.99970 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00103 * 179.97438 * 7 2 1 9 9 C 1.41342 * 119.99872 * 359.97438 * 7 2 1 10 10 C 1.40601 * 119.78692 * 180.02562 * 9 7 2 11 11 C 1.38311 * 119.12843 * 180.02562 * 10 9 7 12 12 C 1.38681 * 118.67097 * 359.72046 * 11 10 9 13 13 C 1.39646 * 119.49637 * 0.52356 * 12 11 10 14 14 N 1.39250 * 119.57560 * 179.74901 * 13 12 11 15 15 C 1.34771 * 120.00209 * 185.40572 * 14 13 12 16 16 O 1.21579 * 119.99803 * 354.84911 * 15 14 13 17 17 N 1.34775 * 120.00359 * 174.85584 * 15 14 13 18 18 C 1.46503 * 119.99973 * 179.97438 * 17 15 14 19 19 C 1.53007 * 109.46930 * 179.97438 * 18 17 15 20 20 H 1.08997 * 109.38137 * 300.21337 * 19 18 17 21 21 C 1.52637 * 109.38305 * 180.53425 * 19 18 17 22 22 S 1.81173 * 109.99453 * 172.99116 * 21 19 18 23 23 C 1.81171 * 103.31380 * 62.60827 * 22 21 19 24 24 C 1.52637 * 109.99755 * 297.38961 * 23 22 21 25 25 S 1.81171 * 109.38406 * 60.00033 * 19 18 17 26 26 N 1.31927 * 120.85007 * 359.46706 * 13 12 11 27 27 H 0.97003 * 120.00216 * 359.97438 * 1 2 3 28 28 H 1.08003 * 120.43336 * 359.97351 * 10 9 7 29 29 H 1.08011 * 120.66103 * 180.02562 * 11 10 9 30 30 H 1.08003 * 120.25318 * 180.26565 * 12 11 10 31 31 H 0.97000 * 119.99898 * 5.40116 * 14 13 12 32 32 H 0.97005 * 119.99971 * 359.97438 * 17 15 14 33 33 H 1.09001 * 109.47169 * 59.99950 * 18 17 15 34 34 H 1.08999 * 109.47236 * 299.99476 * 18 17 15 35 35 H 1.09003 * 109.38139 * 293.15051 * 21 19 18 36 36 H 1.09001 * 109.38360 * 52.82430 * 21 19 18 37 37 H 1.09002 * 109.38713 * 177.22320 * 23 22 21 38 38 H 1.09005 * 109.38354 * 57.54915 * 23 22 21 39 39 H 1.09000 * 109.38362 * 306.69207 * 24 23 22 40 40 H 1.09000 * 109.30008 * 186.95510 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.7015 1.3463 -0.0006 5 1 1.8827 2.3965 -1.2125 6 1 1.8828 2.3964 1.2125 7 6 2.0076 -1.2127 -0.0005 8 1 3.0875 -1.2127 -0.0010 9 6 1.3008 -2.4367 -0.0005 10 6 2.0083 -3.6518 -0.0005 11 6 1.3030 -4.8415 -0.0011 12 6 -0.0830 -4.7934 0.0043 13 6 -0.7280 -3.5548 -0.0010 14 7 -2.1195 -3.5046 -0.0008 15 6 -2.7511 -2.3196 -0.1159 16 8 -2.1093 -1.2871 -0.1254 17 7 -4.0942 -2.2791 -0.2201 18 6 -4.7807 -0.9909 -0.3446 19 6 -6.2894 -1.2248 -0.4466 20 1 -6.5017 -1.8400 -1.3209 21 6 -7.0016 0.1177 -0.5896 22 16 -8.7634 -0.1476 -0.9181 23 6 -9.3419 -1.0003 0.5720 24 6 -8.6297 -2.3428 0.7150 25 16 -6.8679 -2.0774 1.0436 26 7 -0.0359 -2.4317 -0.0005 27 1 -0.4850 0.8401 0.0004 28 1 3.0883 -3.6559 -0.0010 29 1 1.8214 -5.7891 -0.0007 30 1 -0.6591 -5.7069 0.0084 31 1 -2.6344 -4.3225 0.0820 32 1 -4.6064 -3.1029 -0.2128 33 1 -4.4315 -0.4781 -1.2408 34 1 -4.5661 -0.3787 0.5313 35 1 -6.8873 0.6878 0.3324 36 1 -6.5596 0.6756 -1.4151 37 1 -10.4167 -1.1669 0.4994 38 1 -9.1312 -0.3842 1.4462 39 1 -8.7438 -2.9128 -0.2070 40 1 -9.0720 -2.8991 1.5414 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881153651.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:30 Heat of formation + Delta-G solvation = 33.565404 kcal Electronic energy + Delta-G solvation = -24347.012599 eV Core-core repulsion = 20801.230966 eV Total energy + Delta-G solvation = -3545.781633 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 339.082 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.46683 -37.78845 -35.87786 -34.03244 -33.69506 -32.94615 -32.24275 -30.23951 -28.96971 -26.46061 -25.34453 -24.31043 -22.53278 -21.81806 -21.13137 -19.75486 -18.03466 -17.72778 -16.99562 -16.85730 -16.19309 -15.85211 -15.06002 -14.69551 -14.62186 -14.45787 -14.31606 -14.14546 -13.72753 -13.70279 -13.32666 -13.20510 -12.80573 -12.75848 -12.69286 -12.09342 -11.88139 -11.67881 -11.14681 -11.06909 -10.89921 -10.60507 -10.59050 -10.42754 -10.00646 -9.87070 -9.66073 -9.11246 -8.98960 -8.50497 -8.34300 -8.02634 -7.90801 -7.17067 -6.89604 -6.06836 -4.34564 1.11458 1.24667 1.92757 2.13924 2.87549 3.16525 3.20490 3.23429 3.24065 3.30742 4.10479 4.14357 4.23158 4.25388 4.46537 4.51427 4.63704 4.80873 4.87521 4.99523 5.05433 5.09257 5.25118 5.30807 5.67611 5.83241 6.09702 6.14144 6.52190 6.65115 6.83089 6.88980 6.92986 7.27801 7.39509 7.66513 7.78237 7.86149 8.21764 8.34314 8.69625 8.84462 9.10891 9.62012 10.31712 10.54071 Molecular weight = 339.08amu Principal moments of inertia in cm(-1) A = 0.015158 B = 0.002924 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.822425 B = 9573.331903 C =11128.244589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.648 5.648 2 C 0.056 3.944 3 Si 0.894 3.106 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.425 4.425 8 H 0.082 0.918 9 C 0.271 3.729 10 C -0.307 4.307 11 C -0.036 4.036 12 C -0.358 4.358 13 C 0.387 3.613 14 N -0.672 5.672 15 C 0.665 3.335 16 O -0.463 6.463 17 N -0.757 5.757 18 C 0.170 3.830 19 C -0.069 4.069 20 H 0.105 0.895 21 C -0.082 4.082 22 S -0.250 6.250 23 C -0.090 4.090 24 C -0.098 4.098 25 S -0.225 6.225 26 N -0.471 5.471 27 H 0.270 0.730 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.395 0.605 32 H 0.389 0.611 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.101 0.899 36 H 0.122 0.878 37 H 0.114 0.886 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.817 -1.802 -0.017 19.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.267 5.267 2 C -0.173 4.173 3 Si 0.718 3.282 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.456 4.456 8 H 0.100 0.900 9 C 0.146 3.854 10 C -0.330 4.330 11 C -0.060 4.060 12 C -0.384 4.384 13 C 0.148 3.852 14 N -0.320 5.320 15 C 0.363 3.637 16 O -0.327 6.327 17 N -0.419 5.419 18 C 0.042 3.958 19 C -0.200 4.200 20 H 0.123 0.877 21 C -0.233 4.233 22 S -0.021 6.021 23 C -0.240 4.240 24 C -0.248 4.248 25 S 0.002 5.998 26 N -0.190 5.190 27 H 0.082 0.918 28 H 0.114 0.886 29 H 0.113 0.887 30 H 0.108 0.892 31 H 0.228 0.772 32 H 0.222 0.778 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.120 0.880 36 H 0.140 0.860 37 H 0.133 0.867 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -19.861 0.234 -0.043 19.862 hybrid contribution 0.121 -1.060 0.057 1.069 sum -19.739 -0.826 0.015 19.756 Atomic orbital electron populations 1.70368 1.05574 1.27097 1.23654 1.26193 0.95135 1.00506 0.95446 0.86495 0.80946 0.82435 0.78299 1.18645 1.20128 1.20121 1.19601 0.94034 0.89368 1.42597 0.89982 1.18407 0.87174 0.91965 0.87896 1.21619 0.98520 0.93550 1.19286 1.20543 0.93129 0.96509 0.95862 1.20437 0.94749 0.94814 1.28403 1.18332 0.82421 0.90879 0.93595 1.42525 1.05213 1.07923 1.76365 1.16381 0.81142 0.85557 0.80569 1.91391 1.62299 1.29858 1.49145 1.45253 1.05918 1.08135 1.82593 1.20749 0.85264 0.86534 1.03267 1.23683 0.98995 0.98262 0.99086 0.87653 1.23553 0.93189 0.98732 1.07797 1.86871 1.09726 1.77156 1.28370 1.23550 1.03696 0.97651 0.99126 1.23592 0.95067 0.99207 1.06983 1.87291 1.07788 1.76872 1.27801 1.68693 1.06850 1.23137 1.20329 0.91788 0.88617 0.88653 0.89170 0.77200 0.77787 0.90076 0.90795 0.88009 0.85993 0.86739 0.88468 0.88587 0.86614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.65 -18.18 8.99 55.55 0.50 -17.68 16 2 C 0.06 1.51 5.50 -17.34 -0.10 1.41 16 3 Si 0.89 19.46 29.56 -169.99 -5.02 14.44 16 4 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 5 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 6 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 7 C -0.43 -11.87 9.14 -37.73 -0.34 -12.22 16 8 H 0.08 2.15 7.85 -52.49 -0.41 1.74 16 9 C 0.27 7.73 6.55 -84.99 -0.56 7.18 16 10 C -0.31 -7.84 9.83 -38.66 -0.38 -8.22 16 11 C -0.04 -0.83 10.15 -39.39 -0.40 -1.23 16 12 C -0.36 -8.17 9.95 -38.89 -0.39 -8.56 16 13 C 0.39 9.62 7.43 -154.99 -1.15 8.47 16 14 N -0.67 -13.55 5.39 -15.79 -0.09 -13.63 16 15 C 0.67 13.67 8.52 -86.92 -0.74 12.93 16 16 O -0.46 -11.80 12.11 5.30 0.06 -11.73 16 17 N -0.76 -11.13 5.27 -65.22 -0.34 -11.48 16 18 C 0.17 2.17 5.10 -4.04 -0.02 2.15 16 19 C -0.07 -0.65 2.50 -26.91 -0.07 -0.72 16 20 H 0.11 0.96 8.14 -51.92 -0.42 0.54 16 21 C -0.08 -0.69 5.53 36.97 0.20 -0.49 16 22 S -0.25 -2.12 22.05 -107.50 -2.37 -4.49 16 23 C -0.09 -0.58 6.25 36.97 0.23 -0.35 16 24 C -0.10 -0.65 6.25 36.97 0.23 -0.42 16 25 S -0.22 -2.17 20.60 -107.50 -2.21 -4.38 16 26 N -0.47 -13.46 5.74 -10.26 -0.06 -13.52 16 27 H 0.27 7.09 8.29 -40.82 -0.34 6.75 16 28 H 0.10 2.27 8.06 -52.48 -0.42 1.85 16 29 H 0.10 1.86 8.06 -52.48 -0.42 1.44 16 30 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 31 H 0.40 6.20 8.71 -40.82 -0.36 5.84 16 32 H 0.39 4.71 7.99 -40.82 -0.33 4.38 16 33 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.10 0.87 8.14 -51.92 -0.42 0.44 16 36 H 0.12 0.95 8.13 -51.92 -0.42 0.53 16 37 H 0.11 0.55 8.14 -51.92 -0.42 0.13 16 38 H 0.10 0.64 8.14 -51.91 -0.42 0.22 16 39 H 0.10 0.62 8.14 -51.92 -0.42 0.20 16 40 H 0.12 0.62 8.14 -51.92 -0.42 0.19 16 LS Contribution 354.00 15.07 5.33 5.33 Total: -1.00 -33.60 354.00 -12.98 -46.57 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -5.30 Total: 10.64 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: -3.48 Total: -0.07 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: 0.01 Total: -56.31 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.06 Total: -11.73 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.02 Total: 14.44 kcal Atomic # 16 Polarization: -4.29 SS G_CDS: -4.59 Total: -8.87 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.60 -12.98 -46.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881153651.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.137 kcal (2) G-P(sol) polarization free energy of solvation -33.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds