Wall clock time and date at job start Tue Mar 31 2020 22:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86800 * 120.00156 * 2 1 4 4 H 1.48499 * 109.47140 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47059 * 300.00339 * 3 2 1 6 6 H 1.48499 * 109.46962 * 60.00300 * 3 2 1 7 7 C 1.40027 * 119.99970 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00103 * 179.97438 * 7 2 1 9 9 C 1.41342 * 119.99872 * 359.97438 * 7 2 1 10 10 C 1.40601 * 119.78692 * 180.02562 * 9 7 2 11 11 C 1.38311 * 119.12843 * 180.02562 * 10 9 7 12 12 C 1.38681 * 118.67097 * 359.72046 * 11 10 9 13 13 C 1.39646 * 119.49637 * 0.52356 * 12 11 10 14 14 N 1.39250 * 119.57560 * 179.74901 * 13 12 11 15 15 C 1.34771 * 120.00209 * 185.40572 * 14 13 12 16 16 O 1.21579 * 119.99803 * 354.84911 * 15 14 13 17 17 N 1.34775 * 120.00359 * 174.85584 * 15 14 13 18 18 C 1.46503 * 119.99973 * 179.97438 * 17 15 14 19 19 C 1.53007 * 109.46930 * 179.97438 * 18 17 15 20 20 H 1.08997 * 109.38137 * 300.21337 * 19 18 17 21 21 C 1.52637 * 109.38305 * 180.53425 * 19 18 17 22 22 S 1.81173 * 109.99453 * 172.99116 * 21 19 18 23 23 C 1.81171 * 103.31380 * 62.60827 * 22 21 19 24 24 C 1.52637 * 109.99755 * 297.38961 * 23 22 21 25 25 S 1.81171 * 109.38406 * 60.00033 * 19 18 17 26 26 N 1.31927 * 120.85007 * 359.46706 * 13 12 11 27 27 H 0.97003 * 120.00216 * 359.97438 * 1 2 3 28 28 H 1.08003 * 120.43336 * 359.97351 * 10 9 7 29 29 H 1.08011 * 120.66103 * 180.02562 * 11 10 9 30 30 H 1.08003 * 120.25318 * 180.26565 * 12 11 10 31 31 H 0.97000 * 119.99898 * 5.40116 * 14 13 12 32 32 H 0.97005 * 119.99971 * 359.97438 * 17 15 14 33 33 H 1.09001 * 109.47169 * 59.99950 * 18 17 15 34 34 H 1.08999 * 109.47236 * 299.99476 * 18 17 15 35 35 H 1.09003 * 109.38139 * 293.15051 * 21 19 18 36 36 H 1.09001 * 109.38360 * 52.82430 * 21 19 18 37 37 H 1.09002 * 109.38713 * 177.22320 * 23 22 21 38 38 H 1.09005 * 109.38354 * 57.54915 * 23 22 21 39 39 H 1.09000 * 109.38362 * 306.69207 * 24 23 22 40 40 H 1.09000 * 109.30008 * 186.95510 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.7015 1.3463 -0.0006 5 1 1.8827 2.3965 -1.2125 6 1 1.8828 2.3964 1.2125 7 6 2.0076 -1.2127 -0.0005 8 1 3.0875 -1.2127 -0.0010 9 6 1.3008 -2.4367 -0.0005 10 6 2.0083 -3.6518 -0.0005 11 6 1.3030 -4.8415 -0.0011 12 6 -0.0830 -4.7934 0.0043 13 6 -0.7280 -3.5548 -0.0010 14 7 -2.1195 -3.5046 -0.0008 15 6 -2.7511 -2.3196 -0.1159 16 8 -2.1093 -1.2871 -0.1254 17 7 -4.0942 -2.2791 -0.2201 18 6 -4.7807 -0.9909 -0.3446 19 6 -6.2894 -1.2248 -0.4466 20 1 -6.5017 -1.8400 -1.3209 21 6 -7.0016 0.1177 -0.5896 22 16 -8.7634 -0.1476 -0.9181 23 6 -9.3419 -1.0003 0.5720 24 6 -8.6297 -2.3428 0.7150 25 16 -6.8679 -2.0774 1.0436 26 7 -0.0359 -2.4317 -0.0005 27 1 -0.4850 0.8401 0.0004 28 1 3.0883 -3.6559 -0.0010 29 1 1.8214 -5.7891 -0.0007 30 1 -0.6591 -5.7069 0.0084 31 1 -2.6344 -4.3225 0.0820 32 1 -4.6064 -3.1029 -0.2128 33 1 -4.4315 -0.4781 -1.2408 34 1 -4.5661 -0.3787 0.5313 35 1 -6.8873 0.6878 0.3324 36 1 -6.5596 0.6756 -1.4151 37 1 -10.4167 -1.1669 0.4994 38 1 -9.1312 -0.3842 1.4462 39 1 -8.7438 -2.9128 -0.2070 40 1 -9.0720 -2.8991 1.5414 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881153651.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:30 Heat of formation + Delta-G solvation = 13.048440 kcal Electronic energy + Delta-G solvation = -24347.902281 eV Core-core repulsion = 20801.230966 eV Total energy + Delta-G solvation = -3546.671315 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 339.082 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.12117 -39.55771 -37.06251 -35.81090 -34.81100 -34.46163 -33.28268 -32.16855 -30.79454 -27.80115 -27.05253 -24.86195 -23.91183 -23.22063 -22.91309 -21.39090 -19.77122 -18.91319 -18.31303 -17.96383 -17.57659 -16.69414 -16.55111 -16.24964 -16.12186 -15.75980 -15.62542 -15.21694 -14.94182 -14.82154 -14.63500 -14.42086 -14.11358 -14.02316 -13.67265 -13.63904 -13.41805 -12.89527 -12.70246 -12.59942 -12.51674 -12.29369 -11.77433 -11.72393 -11.50271 -11.28929 -10.87846 -10.85124 -10.66862 -9.92642 -9.82798 -9.10928 -9.03924 -8.77631 -8.74586 -8.00012 -6.38569 0.42782 0.58476 0.98484 1.27592 1.30377 1.40839 1.47011 1.53354 1.55408 1.83928 2.28480 2.57897 3.06068 3.26384 3.53797 3.62062 3.66364 3.90299 4.03242 4.09839 4.23743 4.34208 4.37791 4.56039 4.60103 4.62200 4.73374 4.75798 4.80427 4.89642 4.98922 5.08683 5.29823 5.60688 5.69397 5.87602 5.94662 6.04837 6.32735 6.44451 6.84408 7.09854 7.24967 8.01631 8.40457 8.60931 Molecular weight = 339.08amu Principal moments of inertia in cm(-1) A = 0.015158 B = 0.002924 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.822425 B = 9573.331903 C =11128.244589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.684 5.684 2 C 0.010 3.990 3 Si 0.974 3.026 4 H -0.255 1.255 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.466 4.466 8 H 0.085 0.915 9 C 0.236 3.764 10 C -0.330 4.330 11 C -0.034 4.034 12 C -0.346 4.346 13 C 0.365 3.635 14 N -0.661 5.661 15 C 0.659 3.341 16 O -0.515 6.515 17 N -0.734 5.734 18 C 0.172 3.828 19 C -0.049 4.049 20 H 0.113 0.887 21 C -0.079 4.079 22 S -0.268 6.268 23 C -0.083 4.083 24 C -0.083 4.083 25 S -0.265 6.265 26 N -0.507 5.507 27 H 0.269 0.731 28 H 0.104 0.896 29 H 0.138 0.862 30 H 0.131 0.869 31 H 0.417 0.583 32 H 0.405 0.595 33 H 0.073 0.927 34 H 0.055 0.945 35 H 0.098 0.902 36 H 0.126 0.874 37 H 0.138 0.862 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.545 -3.154 -0.005 21.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.303 5.303 2 C -0.216 4.216 3 Si 0.795 3.205 4 H -0.178 1.178 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.497 4.497 8 H 0.103 0.897 9 C 0.110 3.890 10 C -0.354 4.354 11 C -0.058 4.058 12 C -0.372 4.372 13 C 0.126 3.874 14 N -0.311 5.311 15 C 0.357 3.643 16 O -0.382 6.382 17 N -0.395 5.395 18 C 0.045 3.955 19 C -0.181 4.181 20 H 0.131 0.869 21 C -0.229 4.229 22 S -0.040 6.040 23 C -0.233 4.233 24 C -0.233 4.233 25 S -0.038 6.038 26 N -0.226 5.226 27 H 0.079 0.921 28 H 0.122 0.878 29 H 0.155 0.845 30 H 0.149 0.851 31 H 0.254 0.746 32 H 0.241 0.759 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.117 0.883 36 H 0.144 0.856 37 H 0.156 0.844 38 H 0.115 0.885 39 H 0.121 0.879 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -21.662 -1.185 -0.032 21.695 hybrid contribution 0.502 -0.847 0.078 0.987 sum -21.161 -2.032 0.046 21.258 Atomic orbital electron populations 1.70569 1.07111 1.27724 1.24903 1.27041 0.96038 1.03931 0.94596 0.85293 0.79598 0.77295 0.78334 1.17812 1.19595 1.19637 1.19910 0.94376 0.90468 1.44907 0.89714 1.18902 0.87953 0.93432 0.88666 1.21802 0.99184 0.93846 1.20521 1.21025 0.93488 0.97340 0.93961 1.20914 0.95150 0.95556 1.25537 1.18830 0.84125 0.91082 0.93395 1.42374 1.03919 1.09007 1.75845 1.16656 0.82542 0.84941 0.80112 1.91382 1.63938 1.31558 1.51369 1.44961 1.03984 1.09699 1.80852 1.20754 0.87509 0.85261 1.01992 1.23453 0.96257 0.99055 0.99287 0.86857 1.23477 0.93531 0.98054 1.07885 1.86959 1.09264 1.77755 1.29976 1.23613 1.04799 0.97111 0.97780 1.23641 0.92034 0.99559 1.08068 1.87426 1.11330 1.76849 1.28210 1.68653 1.07212 1.25333 1.21407 0.92067 0.87794 0.84470 0.85071 0.74640 0.75881 0.90926 0.92704 0.88296 0.85634 0.84442 0.88473 0.87904 0.84647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.68 -40.18 8.99 21.84 0.20 -39.98 16 2 C 0.01 0.53 5.50 85.29 0.47 1.00 16 3 Si 0.97 41.46 29.56 68.60 2.03 43.49 16 4 H -0.25 -10.35 7.11 99.48 0.71 -9.65 16 5 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 6 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 7 C -0.47 -27.06 9.14 23.47 0.21 -26.85 16 8 H 0.08 4.62 7.85 -2.91 -0.02 4.60 16 9 C 0.24 13.94 6.55 40.20 0.26 14.20 16 10 C -0.33 -17.02 9.83 22.86 0.22 -16.79 16 11 C -0.03 -1.50 10.15 22.39 0.23 -1.27 16 12 C -0.35 -15.02 9.95 22.72 0.23 -14.80 16 13 C 0.37 18.11 7.43 133.24 0.99 19.10 16 14 N -0.66 -26.31 5.39 -322.14 -1.74 -28.04 16 15 C 0.66 27.51 8.52 179.06 1.53 29.04 16 16 O -0.51 -27.36 12.11 -3.96 -0.05 -27.40 16 17 N -0.73 -21.44 5.27 -478.53 -2.52 -23.96 16 18 C 0.17 4.49 5.10 86.38 0.44 4.93 16 19 C -0.05 -0.89 2.50 30.48 0.08 -0.81 16 20 H 0.11 1.89 8.14 -2.40 -0.02 1.87 16 21 C -0.08 -1.28 5.53 71.86 0.40 -0.89 16 22 S -0.27 -4.10 22.05 -56.49 -1.25 -5.35 16 23 C -0.08 -0.85 6.25 71.86 0.45 -0.40 16 24 C -0.08 -0.88 6.25 71.86 0.45 -0.43 16 25 S -0.27 -4.75 20.60 -56.49 -1.16 -5.91 16 26 N -0.51 -29.80 5.74 -186.37 -1.07 -30.87 16 27 H 0.27 14.84 8.29 -92.71 -0.77 14.07 16 28 H 0.10 4.99 8.06 -2.91 -0.02 4.96 16 29 H 0.14 4.84 8.06 -2.91 -0.02 4.81 16 30 H 0.13 4.55 8.06 -2.91 -0.02 4.53 16 31 H 0.42 12.28 8.71 -92.71 -0.81 11.47 16 32 H 0.40 9.28 7.99 -92.70 -0.74 8.54 16 33 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.13 1.93 8.13 -2.39 -0.02 1.91 16 37 H 0.14 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.14 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -76.66 354.00 -0.07 -76.74 By element: Atomic # 1 Polarization: 35.73 SS G_CDS: -0.46 Total: 35.27 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: 5.95 Total: 6.02 kcal Atomic # 7 Polarization: -117.73 SS G_CDS: -5.13 Total: -122.86 kcal Atomic # 8 Polarization: -27.36 SS G_CDS: -0.05 Total: -27.40 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal Atomic # 16 Polarization: -8.85 SS G_CDS: -2.41 Total: -11.26 kcal Total: -76.66 -0.07 -76.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881153651.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.784 kcal (2) G-P(sol) polarization free energy of solvation -76.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds