Wall clock time and date at job start Tue Mar 31 2020 22:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46496 * 110.33318 * 2 1 4 4 S 1.65600 * 119.99721 * 46.99103 * 3 2 1 5 5 O 1.42103 * 106.39986 * 178.14996 * 4 3 2 6 6 O 1.42098 * 106.40328 * 45.23222 * 4 3 2 7 7 C 1.76191 * 107.21892 * 291.68860 * 4 3 2 8 8 C 1.38238 * 120.00239 * 102.31307 * 7 4 3 9 9 C 1.38236 * 120.00544 * 180.02562 * 8 7 4 10 10 C 1.38239 * 119.99642 * 359.95682 * 9 8 7 11 11 C 1.50695 * 119.99815 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.47176 * 90.00057 * 11 10 9 13 13 H 1.08001 * 120.00011 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00063 * 179.72572 * 12 11 10 15 15 N 1.31520 * 120.00022 * 0.27230 * 14 12 11 16 16 Si 1.86801 * 120.00190 * 180.27588 * 14 12 11 17 17 H 1.48507 * 109.46929 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47081 * 119.99668 * 16 14 12 19 19 H 1.48498 * 109.47441 * 240.00071 * 16 14 12 20 20 C 1.38230 * 120.00108 * 0.27670 * 10 9 8 21 21 C 1.38233 * 120.00311 * 282.29219 * 7 4 3 22 22 C 1.54494 * 110.37137 * 237.75561 * 2 1 3 23 23 C 1.54569 * 102.15240 * 225.71447 * 22 2 1 24 24 O 1.45840 * 104.44290 * 26.84721 * 23 22 2 25 25 C 1.34067 * 109.90321 * 329.39926 * 24 23 22 26 26 O 1.20828 * 125.08926 * 200.84823 * 25 24 23 27 27 H 1.09004 * 109.46976 * 49.58544 * 1 2 3 28 28 H 1.09002 * 109.47458 * 169.58131 * 1 2 3 29 29 H 1.08997 * 109.47562 * 289.58915 * 1 2 3 30 30 H 0.97000 * 120.00272 * 226.98729 * 3 2 1 31 31 H 1.08007 * 119.99504 * 359.97438 * 8 7 4 32 32 H 1.08001 * 119.99848 * 179.97438 * 9 8 7 33 33 H 1.09005 * 109.47089 * 330.00259 * 11 10 9 34 34 H 1.09001 * 109.46999 * 210.00193 * 11 10 9 35 35 H 0.96999 * 120.00006 * 180.02562 * 15 14 12 36 36 H 1.08001 * 120.00142 * 179.72706 * 20 10 9 37 37 H 1.08001 * 120.00146 * 359.97438 * 21 7 4 38 38 H 1.09010 * 110.86746 * 343.87813 * 22 2 1 39 39 H 1.09000 * 110.86863 * 107.54762 * 22 2 1 40 40 H 1.08997 * 110.44497 * 145.58512 * 23 22 2 41 41 H 1.08997 * 110.43856 * 268.10973 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0390 1.3737 0.0000 4 16 1.4093 2.4899 1.0487 5 8 2.1327 3.6942 0.8347 6 8 1.3245 1.8487 2.3140 7 6 -0.2473 2.8075 0.5397 8 6 -1.3027 2.2344 1.2243 9 6 -2.6024 2.4830 0.8247 10 6 -2.8469 3.3056 -0.2591 11 6 -4.2638 3.5772 -0.6944 12 6 -4.7863 4.7933 0.0261 13 1 -4.1553 5.3173 0.7287 14 6 -6.0678 5.2405 -0.2162 15 7 -6.8361 4.6026 -1.0721 16 14 -6.7129 6.7524 0.6712 17 1 -5.6605 7.2826 1.5749 18 1 -7.0807 7.7913 -0.3242 19 1 -7.9105 6.3850 1.4687 20 6 -1.7914 3.8749 -0.9466 21 6 -0.4918 3.6301 -0.5439 22 6 2.0677 -0.7727 -1.2250 23 6 3.1701 -1.6544 -0.5952 24 8 2.7463 -1.8334 0.7887 25 6 2.0589 -0.7578 1.1984 26 8 1.8877 -0.4406 2.3517 27 1 -0.3633 0.6663 -0.7825 28 1 -0.3634 -1.0107 -0.1858 29 1 -0.3634 0.3445 0.9681 30 1 2.7448 1.6294 -0.6142 31 1 -1.1116 1.5915 2.0710 32 1 -3.4269 2.0349 1.3594 33 1 -4.8887 2.7167 -0.4551 34 1 -4.2858 3.7545 -1.7697 35 1 -7.7375 4.9175 -1.2429 36 1 -1.9823 4.5140 -1.7961 37 1 0.3326 4.0785 -1.0784 38 1 1.2856 -1.3879 -1.6700 39 1 2.4908 -0.0886 -1.9605 40 1 3.2248 -2.6168 -1.1040 41 1 4.1334 -1.1461 -0.6355 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885197149.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:25 Heat of formation + Delta-G solvation = -120.580252 kcal Electronic energy + Delta-G solvation = -27858.194500 eV Core-core repulsion = 23830.682987 eV Total energy + Delta-G solvation = -4027.511512 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.50418 -38.94349 -37.66191 -37.12567 -36.38314 -35.71606 -33.74182 -31.69868 -31.50570 -30.72792 -29.57777 -27.47046 -25.69445 -23.74284 -23.04172 -22.39735 -21.09741 -20.91252 -19.36525 -18.18231 -17.81679 -17.23799 -16.94858 -16.49541 -16.38976 -15.77051 -15.18094 -14.90142 -14.75023 -14.42094 -14.33469 -14.13166 -13.83425 -13.32649 -13.27850 -13.11145 -12.71360 -12.62183 -12.43611 -12.29869 -11.96946 -11.94396 -11.82335 -11.71047 -11.51646 -11.43942 -11.13397 -10.95167 -10.92317 -10.82083 -10.51043 -10.46560 -9.75957 -9.70126 -9.57094 -8.60357 -8.56035 -8.39102 -6.19634 -4.24521 0.41532 1.28334 1.74981 1.81915 2.89099 2.96790 3.21899 3.30143 3.35494 3.41632 3.67306 3.79425 4.06367 4.07409 4.27032 4.35566 4.50351 4.57750 4.85962 4.94293 5.10496 5.12724 5.17645 5.19076 5.24548 5.35267 5.53568 5.68738 5.78025 5.85849 5.87682 6.20319 6.28805 6.35080 6.46901 6.59031 6.80116 6.87373 7.25745 7.31555 7.39168 7.55638 7.75838 8.10675 8.80661 9.40803 10.90390 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.022184 B = 0.002965 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.840652 B = 9442.668490 C = 9822.962560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.128 3.872 3 N -1.102 6.102 4 S 2.682 3.318 5 O -0.963 6.963 6 O -0.930 6.930 7 C -0.703 4.703 8 C -0.023 4.023 9 C -0.145 4.145 10 C 0.028 3.972 11 C 0.039 3.961 12 C -0.517 4.517 13 H 0.060 0.940 14 C 0.061 3.939 15 N -0.891 5.891 16 Si 0.898 3.102 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.282 1.282 20 C -0.147 4.147 21 C -0.021 4.021 22 C -0.155 4.155 23 C 0.052 3.948 24 O -0.346 6.346 25 C 0.455 3.545 26 O -0.390 6.390 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.419 0.581 31 H 0.136 0.864 32 H 0.129 0.871 33 H 0.035 0.965 34 H 0.034 0.966 35 H 0.264 0.736 36 H 0.128 0.872 37 H 0.125 0.875 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.114 0.886 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.019 -12.980 -4.756 23.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.037 3.963 3 N -0.861 5.861 4 S 2.774 3.226 5 O -0.953 6.953 6 O -0.920 6.920 7 C -0.793 4.793 8 C -0.042 4.042 9 C -0.164 4.164 10 C 0.028 3.972 11 C 0.002 3.998 12 C -0.555 4.555 13 H 0.078 0.922 14 C -0.141 4.141 15 N -0.530 5.530 16 Si 0.725 3.275 17 H -0.195 1.195 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.165 4.165 21 C -0.041 4.041 22 C -0.194 4.194 23 C -0.023 4.023 24 O -0.263 6.263 25 C 0.288 3.712 26 O -0.266 6.266 27 H 0.112 0.888 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.254 0.746 31 H 0.153 0.847 32 H 0.147 0.853 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.073 0.927 36 H 0.146 0.854 37 H 0.143 0.857 38 H 0.126 0.874 39 H 0.125 0.875 40 H 0.132 0.868 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 19.126 -12.695 -3.276 23.189 hybrid contribution -0.831 1.054 -0.541 1.447 sum 18.295 -11.642 -3.817 22.019 Atomic orbital electron populations 1.22795 0.90050 1.05544 1.05984 1.21340 0.97086 0.82919 0.94971 1.55801 1.52117 1.19647 1.58533 1.02242 0.74169 0.72512 0.73629 1.93587 1.71790 1.44115 1.85854 1.93712 1.86530 1.74829 1.36913 1.30309 1.21989 1.15725 1.11242 1.20842 0.92207 0.94809 0.96325 1.21247 0.96113 1.00804 0.98248 1.21106 0.98438 0.87286 0.90375 1.18542 0.85618 0.97995 0.97619 1.21011 0.98522 1.11083 1.24899 0.92219 1.25002 0.96711 0.97275 0.95150 1.69954 1.08746 1.39988 1.34294 0.86430 0.78954 0.82482 0.79602 1.19548 1.20804 1.20784 1.21220 0.91771 1.01703 1.01846 1.20685 0.97720 0.92882 0.92793 1.23321 0.99816 0.99548 0.96713 1.24148 0.97753 1.02300 0.78098 1.87092 1.67736 1.40626 1.30800 1.23472 0.77271 0.79618 0.90841 1.90943 1.52976 1.63090 1.19594 0.88782 0.89429 0.89412 0.74577 0.84662 0.85306 0.94703 0.94750 0.92680 0.85423 0.85724 0.87433 0.87460 0.86773 0.89543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.77 6.68 37.15 0.25 -1.52 16 2 C 0.13 1.14 1.05 -131.88 -0.14 1.00 16 3 N -1.10 -10.30 5.56 0.49 0.00 -10.30 16 4 S 2.68 37.66 5.31 -107.50 -0.57 37.09 16 5 O -0.96 -15.73 17.65 -57.17 -1.01 -16.74 16 6 O -0.93 -15.91 13.35 -66.81 -0.89 -16.80 16 7 C -0.70 -10.54 4.02 -39.58 -0.16 -10.70 16 8 C -0.02 -0.35 6.94 -39.58 -0.27 -0.63 16 9 C -0.15 -2.58 9.70 -39.58 -0.38 -2.96 16 10 C 0.03 0.56 5.07 -104.63 -0.53 0.03 16 11 C 0.04 0.93 5.10 -29.04 -0.15 0.78 16 12 C -0.52 -13.83 9.09 -34.44 -0.31 -14.15 16 13 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 15 N -0.89 -25.23 13.29 55.43 0.74 -24.49 16 16 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 17 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 C -0.15 -2.56 9.70 -39.58 -0.38 -2.95 16 21 C -0.02 -0.32 9.54 -39.58 -0.38 -0.70 16 22 C -0.16 -0.67 6.47 -25.12 -0.16 -0.83 16 23 C 0.05 0.23 7.90 37.98 0.30 0.53 16 24 O -0.35 -3.43 11.05 -38.48 -0.43 -3.86 16 25 C 0.45 5.55 7.40 36.32 0.27 5.82 16 26 O -0.39 -6.51 14.96 -26.45 -0.40 -6.91 16 27 H 0.09 0.87 7.19 -51.93 -0.37 0.50 16 28 H 0.09 0.64 7.93 -51.93 -0.41 0.23 16 29 H 0.09 1.02 4.30 -51.93 -0.22 0.80 16 30 H 0.42 2.52 8.42 -34.47 -0.29 2.23 16 31 H 0.14 1.96 6.53 -52.48 -0.34 1.62 16 32 H 0.13 2.20 8.06 -52.49 -0.42 1.78 16 33 H 0.03 0.86 8.09 -51.93 -0.42 0.44 16 34 H 0.03 0.85 8.08 -51.93 -0.42 0.43 16 35 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 36 H 0.13 2.13 8.06 -52.49 -0.42 1.71 16 37 H 0.12 1.57 7.93 -52.49 -0.42 1.15 16 38 H 0.11 0.31 7.68 -51.92 -0.40 -0.08 16 39 H 0.11 0.23 7.73 -51.93 -0.40 -0.17 16 40 H 0.11 0.22 8.14 -51.93 -0.42 -0.20 16 41 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 LS Contribution 348.46 15.07 5.25 5.25 Total: -1.00 -36.05 348.46 -9.40 -45.45 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -4.93 Total: 0.04 kcal Atomic # 6 Polarization: -22.56 SS G_CDS: -2.15 Total: -24.72 kcal Atomic # 7 Polarization: -35.53 SS G_CDS: 0.74 Total: -34.79 kcal Atomic # 8 Polarization: -41.58 SS G_CDS: -2.72 Total: -44.30 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: 37.66 SS G_CDS: -0.57 Total: 37.09 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -36.05 -9.40 -45.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885197149.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.128 kcal (2) G-P(sol) polarization free energy of solvation -36.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds