Wall clock time and date at job start Tue Mar 31 2020 22:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46496 * 110.33318 * 2 1 4 4 S 1.65600 * 119.99721 * 46.99103 * 3 2 1 5 5 O 1.42103 * 106.39986 * 178.14996 * 4 3 2 6 6 O 1.42098 * 106.40328 * 45.23222 * 4 3 2 7 7 C 1.76191 * 107.21892 * 291.68860 * 4 3 2 8 8 C 1.38238 * 120.00239 * 102.31307 * 7 4 3 9 9 C 1.38236 * 120.00544 * 180.02562 * 8 7 4 10 10 C 1.38239 * 119.99642 * 359.95682 * 9 8 7 11 11 C 1.50695 * 119.99815 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.47176 * 90.00057 * 11 10 9 13 13 H 1.08001 * 120.00011 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00063 * 179.72572 * 12 11 10 15 15 N 1.31520 * 120.00022 * 0.27230 * 14 12 11 16 16 Si 1.86801 * 120.00190 * 180.27588 * 14 12 11 17 17 H 1.48507 * 109.46929 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47081 * 119.99668 * 16 14 12 19 19 H 1.48498 * 109.47441 * 240.00071 * 16 14 12 20 20 C 1.38230 * 120.00108 * 0.27670 * 10 9 8 21 21 C 1.38233 * 120.00311 * 282.29219 * 7 4 3 22 22 C 1.54494 * 110.37137 * 237.75561 * 2 1 3 23 23 C 1.54569 * 102.15240 * 225.71447 * 22 2 1 24 24 O 1.45840 * 104.44290 * 26.84721 * 23 22 2 25 25 C 1.34067 * 109.90321 * 329.39926 * 24 23 22 26 26 O 1.20828 * 125.08926 * 200.84823 * 25 24 23 27 27 H 1.09004 * 109.46976 * 49.58544 * 1 2 3 28 28 H 1.09002 * 109.47458 * 169.58131 * 1 2 3 29 29 H 1.08997 * 109.47562 * 289.58915 * 1 2 3 30 30 H 0.97000 * 120.00272 * 226.98729 * 3 2 1 31 31 H 1.08007 * 119.99504 * 359.97438 * 8 7 4 32 32 H 1.08001 * 119.99848 * 179.97438 * 9 8 7 33 33 H 1.09005 * 109.47089 * 330.00259 * 11 10 9 34 34 H 1.09001 * 109.46999 * 210.00193 * 11 10 9 35 35 H 0.96999 * 120.00006 * 180.02562 * 15 14 12 36 36 H 1.08001 * 120.00142 * 179.72706 * 20 10 9 37 37 H 1.08001 * 120.00146 * 359.97438 * 21 7 4 38 38 H 1.09010 * 110.86746 * 343.87813 * 22 2 1 39 39 H 1.09000 * 110.86863 * 107.54762 * 22 2 1 40 40 H 1.08997 * 110.44497 * 145.58512 * 23 22 2 41 41 H 1.08997 * 110.43856 * 268.10973 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0390 1.3737 0.0000 4 16 1.4093 2.4899 1.0487 5 8 2.1327 3.6942 0.8347 6 8 1.3245 1.8487 2.3140 7 6 -0.2473 2.8075 0.5397 8 6 -1.3027 2.2344 1.2243 9 6 -2.6024 2.4830 0.8247 10 6 -2.8469 3.3056 -0.2591 11 6 -4.2638 3.5772 -0.6944 12 6 -4.7863 4.7933 0.0261 13 1 -4.1553 5.3173 0.7287 14 6 -6.0678 5.2405 -0.2162 15 7 -6.8361 4.6026 -1.0721 16 14 -6.7129 6.7524 0.6712 17 1 -5.6605 7.2826 1.5749 18 1 -7.0807 7.7913 -0.3242 19 1 -7.9105 6.3850 1.4687 20 6 -1.7914 3.8749 -0.9466 21 6 -0.4918 3.6301 -0.5439 22 6 2.0677 -0.7727 -1.2250 23 6 3.1701 -1.6544 -0.5952 24 8 2.7463 -1.8334 0.7887 25 6 2.0589 -0.7578 1.1984 26 8 1.8877 -0.4406 2.3517 27 1 -0.3633 0.6663 -0.7825 28 1 -0.3634 -1.0107 -0.1858 29 1 -0.3634 0.3445 0.9681 30 1 2.7448 1.6294 -0.6142 31 1 -1.1116 1.5915 2.0710 32 1 -3.4269 2.0349 1.3594 33 1 -4.8887 2.7167 -0.4551 34 1 -4.2858 3.7545 -1.7697 35 1 -7.7375 4.9175 -1.2429 36 1 -1.9823 4.5140 -1.7961 37 1 0.3326 4.0785 -1.0784 38 1 1.2856 -1.3879 -1.6700 39 1 2.4908 -0.0886 -1.9605 40 1 3.2248 -2.6168 -1.1040 41 1 4.1334 -1.1461 -0.6355 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885197149.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:24 Heat of formation + Delta-G solvation = -146.108908 kcal Electronic energy + Delta-G solvation = -27859.301505 eV Core-core repulsion = 23830.682987 eV Total energy + Delta-G solvation = -4028.618518 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.23229 -40.31021 -38.61052 -38.27791 -37.19270 -36.94591 -35.60456 -33.38606 -32.25306 -31.93996 -30.29435 -29.19874 -26.42193 -25.55501 -23.74325 -23.53864 -22.48100 -21.88063 -20.37585 -19.20157 -18.71078 -18.58070 -18.25593 -17.80237 -17.17484 -16.93125 -16.75743 -16.09151 -15.88152 -15.50309 -15.36288 -15.21395 -14.85014 -14.59119 -14.47464 -14.18178 -13.93052 -13.62362 -13.44305 -13.37069 -13.27909 -13.19651 -13.14569 -12.97391 -12.68626 -12.65646 -12.60952 -12.30194 -12.16530 -12.01423 -11.77153 -11.59830 -11.44037 -11.34728 -10.65210 -10.48824 -9.93634 -9.85752 -8.27081 -6.39104 -0.70707 -0.06128 0.41628 0.94811 1.36766 1.38903 1.51032 1.94081 2.25127 2.34461 2.53542 2.75605 2.90078 3.05869 3.15042 3.34028 3.59690 3.84218 3.90198 3.96750 4.03228 4.17508 4.32832 4.48924 4.50345 4.53482 4.66577 4.72772 4.82439 4.92489 4.97749 5.01099 5.10087 5.15201 5.26979 5.28219 5.35277 5.68182 5.70543 5.88790 5.93141 5.97233 6.11059 6.46498 6.73155 7.30027 8.82988 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.022184 B = 0.002965 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.840652 B = 9442.668490 C = 9822.962560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.128 3.872 3 N -1.082 6.082 4 S 2.703 3.297 5 O -0.984 6.984 6 O -0.960 6.960 7 C -0.695 4.695 8 C -0.015 4.015 9 C -0.153 4.153 10 C 0.002 3.998 11 C 0.048 3.952 12 C -0.533 4.533 13 H 0.052 0.948 14 C 0.011 3.989 15 N -0.924 5.924 16 Si 0.961 3.039 17 H -0.269 1.269 18 H -0.274 1.274 19 H -0.276 1.276 20 C -0.152 4.152 21 C -0.011 4.011 22 C -0.143 4.143 23 C 0.042 3.958 24 O -0.363 6.363 25 C 0.451 3.549 26 O -0.450 6.450 27 H 0.098 0.902 28 H 0.108 0.892 29 H 0.062 0.938 30 H 0.438 0.562 31 H 0.146 0.854 32 H 0.126 0.874 33 H 0.013 0.987 34 H 0.016 0.984 35 H 0.267 0.733 36 H 0.132 0.868 37 H 0.158 0.842 38 H 0.128 0.872 39 H 0.139 0.861 40 H 0.145 0.855 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.180 -13.325 -6.265 25.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.036 3.964 3 N -0.847 5.847 4 S 2.794 3.206 5 O -0.974 6.974 6 O -0.950 6.950 7 C -0.783 4.783 8 C -0.034 4.034 9 C -0.172 4.172 10 C 0.001 3.999 11 C 0.011 3.989 12 C -0.571 4.571 13 H 0.071 0.929 14 C -0.188 4.188 15 N -0.564 5.564 16 Si 0.786 3.214 17 H -0.194 1.194 18 H -0.200 1.200 19 H -0.202 1.202 20 C -0.171 4.171 21 C -0.030 4.030 22 C -0.181 4.181 23 C -0.031 4.031 24 O -0.280 6.280 25 C 0.287 3.713 26 O -0.331 6.331 27 H 0.117 0.883 28 H 0.127 0.873 29 H 0.080 0.920 30 H 0.278 0.722 31 H 0.163 0.837 32 H 0.144 0.856 33 H 0.031 0.969 34 H 0.035 0.965 35 H 0.076 0.924 36 H 0.150 0.850 37 H 0.176 0.824 38 H 0.147 0.853 39 H 0.157 0.843 40 H 0.163 0.837 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 21.304 -13.041 -4.830 25.442 hybrid contribution -1.358 1.009 -0.116 1.696 sum 19.946 -12.033 -4.946 23.814 Atomic orbital electron populations 1.22857 0.90629 1.06998 1.04634 1.21486 0.96681 0.82296 0.95898 1.55321 1.52142 1.19095 1.58150 1.01485 0.73373 0.72291 0.73429 1.93557 1.71855 1.45768 1.86239 1.93694 1.86672 1.75336 1.39285 1.30612 1.22611 1.14623 1.10448 1.20908 0.91485 0.94557 0.96491 1.21219 0.97082 1.00885 0.97990 1.20773 0.96798 0.89950 0.92329 1.18264 0.88176 0.96206 0.96226 1.21330 0.98816 1.12063 1.24869 0.92950 1.25822 0.97019 1.00116 0.95867 1.70052 1.09170 1.41545 1.35591 0.85449 0.78291 0.79082 0.78561 1.19357 1.19970 1.20195 1.21283 0.92212 1.01667 1.01918 1.20969 0.97547 0.92010 0.92503 1.23463 1.00198 0.99498 0.94978 1.24661 0.98440 1.04496 0.75471 1.87059 1.67142 1.39836 1.33934 1.24042 0.76520 0.79823 0.90882 1.90906 1.55139 1.64947 1.22092 0.88313 0.87292 0.91961 0.72231 0.83692 0.85630 0.96873 0.96538 0.92402 0.85002 0.82407 0.85342 0.84319 0.83679 0.87769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.32 6.68 71.98 0.48 -2.84 16 2 C 0.13 1.93 1.05 3.56 0.00 1.93 16 3 N -1.08 -17.21 5.56 -152.38 -0.85 -18.05 16 4 S 2.70 71.81 5.31 -56.49 -0.30 71.51 16 5 O -0.98 -30.14 17.65 -128.00 -2.26 -32.40 16 6 O -0.96 -32.73 13.35 -118.78 -1.59 -34.31 16 7 C -0.70 -19.88 4.02 22.27 0.09 -19.79 16 8 C -0.02 -0.48 6.94 22.27 0.15 -0.32 16 9 C -0.15 -5.55 9.70 22.27 0.22 -5.33 16 10 C 0.00 0.07 5.07 -19.87 -0.10 -0.03 16 11 C 0.05 2.40 5.10 29.10 0.15 2.54 16 12 C -0.53 -29.29 9.09 25.60 0.23 -29.06 16 13 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 14 C 0.01 0.60 5.46 84.65 0.46 1.06 16 15 N -0.92 -53.43 13.29 21.45 0.28 -53.14 16 16 Si 0.96 43.43 29.54 68.60 2.03 45.46 16 17 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 18 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 19 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 20 C -0.15 -5.23 9.70 22.27 0.22 -5.02 16 21 C -0.01 -0.32 9.54 22.27 0.21 -0.11 16 22 C -0.14 -0.55 6.47 31.64 0.20 -0.35 16 23 C 0.04 0.21 7.90 72.52 0.57 0.78 16 24 O -0.36 -6.50 11.05 -50.19 -0.55 -7.06 16 25 C 0.45 10.54 7.40 71.44 0.53 11.07 16 26 O -0.45 -15.34 14.96 29.31 0.44 -14.90 16 27 H 0.10 1.60 7.19 -2.38 -0.02 1.58 16 28 H 0.11 1.36 7.93 -2.39 -0.02 1.34 16 29 H 0.06 1.42 4.30 -2.39 -0.01 1.41 16 30 H 0.44 3.54 8.42 -96.75 -0.81 2.73 16 31 H 0.15 4.26 6.53 -2.91 -0.02 4.24 16 32 H 0.13 4.51 8.06 -2.91 -0.02 4.48 16 33 H 0.01 0.69 8.09 -2.38 -0.02 0.67 16 34 H 0.02 0.85 8.08 -2.39 -0.02 0.83 16 35 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 36 H 0.13 4.35 8.06 -2.91 -0.02 4.32 16 37 H 0.16 3.41 7.93 -2.91 -0.02 3.39 16 38 H 0.13 0.07 7.68 -2.38 -0.02 0.05 16 39 H 0.14 -0.26 7.73 -2.39 -0.02 -0.28 16 40 H 0.15 -0.15 8.14 -2.39 -0.02 -0.17 16 41 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 Total: -1.00 -81.94 348.46 0.89 -81.05 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: 0.26 Total: 7.31 kcal Atomic # 6 Polarization: -48.88 SS G_CDS: 3.42 Total: -45.46 kcal Atomic # 7 Polarization: -70.64 SS G_CDS: -0.56 Total: -71.20 kcal Atomic # 8 Polarization: -84.71 SS G_CDS: -3.96 Total: -88.67 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: 71.81 SS G_CDS: -0.30 Total: 71.51 kcal Total: -81.94 0.89 -81.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885197149.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.058 kcal (2) G-P(sol) polarization free energy of solvation -81.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds