Wall clock time and date at job start Tue Mar 31 2020 22:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46495 * 110.41238 * 2 1 4 4 S 1.65605 * 120.00065 * 324.68956 * 3 2 1 5 5 O 1.42100 * 106.40052 * 181.13924 * 4 3 2 6 6 O 1.42097 * 106.40123 * 314.06289 * 4 3 2 7 7 C 1.76206 * 107.21524 * 67.60194 * 4 3 2 8 8 C 1.38233 * 119.99776 * 259.50838 * 7 4 3 9 9 C 1.38228 * 119.99996 * 179.76874 * 8 7 4 10 10 C 1.38238 * 120.00140 * 0.50662 * 9 8 7 11 11 C 1.50702 * 120.00490 * 179.72719 * 10 9 8 12 12 C 1.50697 * 109.46856 * 270.02270 * 11 10 9 13 13 H 1.08004 * 120.00075 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00073 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99539 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00346 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.46958 * 60.00106 * 16 14 12 18 18 H 1.48495 * 109.47107 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47239 * 300.00225 * 16 14 12 20 20 C 1.38235 * 119.99256 * 359.74523 * 10 9 8 21 21 C 1.38231 * 120.00003 * 79.78424 * 7 4 3 22 22 C 1.54490 * 110.36866 * 122.29936 * 2 1 3 23 23 C 1.54572 * 102.33390 * 134.08111 * 22 2 1 24 24 O 1.46149 * 104.28457 * 333.40346 * 23 22 2 25 25 C 1.34062 * 110.03495 * 30.33018 * 24 23 22 26 26 O 1.20821 * 125.10186 * 159.27830 * 25 24 23 27 27 H 1.08999 * 109.46958 * 305.25961 * 1 2 3 28 28 H 1.08999 * 109.47300 * 65.26305 * 1 2 3 29 29 H 1.09001 * 109.46927 * 185.26872 * 1 2 3 30 30 H 0.96996 * 120.00166 * 144.69597 * 3 2 1 31 31 H 1.08004 * 120.00143 * 359.97438 * 8 7 4 32 32 H 1.08003 * 120.00281 * 180.23579 * 9 8 7 33 33 H 1.08998 * 109.46717 * 30.02103 * 11 10 9 34 34 H 1.08991 * 109.47185 * 150.02161 * 11 10 9 35 35 H 0.97006 * 119.99734 * 180.02562 * 15 14 12 36 36 H 1.08011 * 119.99418 * 179.97438 * 20 10 9 37 37 H 1.07998 * 120.00200 * 0.02562 * 21 7 4 38 38 H 1.09001 * 110.86535 * 252.34851 * 22 2 1 39 39 H 1.08998 * 110.86858 * 15.81072 * 22 2 1 40 40 H 1.08997 * 110.44160 * 91.99535 * 23 22 2 41 41 H 1.09006 * 110.43608 * 214.51350 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0410 1.3730 0.0000 4 16 1.2330 2.5572 -0.8290 5 8 1.9847 3.7509 -0.6580 6 8 0.9190 2.0121 -2.1031 7 6 -0.3034 2.8146 -0.0055 8 6 -1.4604 2.2499 -0.5089 9 6 -2.6650 2.4479 0.1397 10 6 -2.7143 3.2191 1.2859 11 6 -4.0284 3.4399 1.9897 12 6 -4.6947 4.6722 1.4343 13 1 -4.2148 5.2386 0.6498 14 6 -5.9175 5.0761 1.9268 15 7 -6.5022 4.3862 2.8817 16 14 -6.7432 6.6040 1.2388 17 1 -6.9838 6.4243 -0.2155 18 1 -8.0382 6.8216 1.9322 19 1 -5.8635 7.7811 1.4532 20 6 -1.5580 3.7879 1.7863 21 6 -0.3526 3.5857 1.1406 22 6 2.0678 -0.7739 1.2242 23 6 3.1675 -1.6608 0.5972 24 8 2.7429 -1.8348 -0.7904 25 6 2.0567 -0.7581 -1.1992 26 8 1.8851 -0.4401 -2.3521 27 1 -0.3633 0.5933 0.8391 28 1 -0.3634 0.4300 -0.9333 29 1 -0.3633 -1.0233 0.0944 30 1 2.8526 1.5884 0.4854 31 1 -1.4228 1.6514 -1.4071 32 1 -3.5683 2.0036 -0.2514 33 1 -4.6741 2.5759 1.8331 34 1 -3.8513 3.5724 3.0569 35 1 -7.3627 4.6701 3.2280 36 1 -1.5966 4.3908 2.6817 37 1 0.5505 4.0309 1.5312 38 1 2.4924 -0.0905 1.9596 39 1 1.2843 -1.3852 1.6719 40 1 4.1329 -1.1564 0.6384 41 1 3.2175 -2.6228 1.1073 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885197151.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:28 Heat of formation + Delta-G solvation = -120.284321 kcal Electronic energy + Delta-G solvation = -27808.850462 eV Core-core repulsion = 23781.351782 eV Total energy + Delta-G solvation = -4027.498680 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.51374 -38.99969 -37.67481 -37.24657 -36.38220 -35.76120 -33.76737 -31.75417 -31.51177 -30.80098 -29.55669 -27.49347 -25.73949 -23.75947 -23.00613 -22.41582 -21.10093 -20.96232 -19.37770 -18.22990 -17.89974 -17.24018 -17.00917 -16.50215 -16.39482 -15.85959 -15.21436 -14.89182 -14.76106 -14.46203 -14.33829 -14.21125 -13.87533 -13.40555 -13.31237 -13.08659 -12.70953 -12.60368 -12.47316 -12.26741 -12.01973 -11.97057 -11.90353 -11.70327 -11.52810 -11.36122 -11.25922 -10.97357 -10.94324 -10.89027 -10.51990 -10.50075 -9.77675 -9.74052 -9.57159 -8.62604 -8.56509 -8.41168 -6.20324 -4.25517 0.37782 1.25262 1.72785 1.78548 2.85755 2.92370 3.24317 3.28600 3.32093 3.42842 3.65329 3.77032 4.04789 4.06262 4.25484 4.34422 4.45634 4.53632 4.84744 4.93064 5.07293 5.11248 5.12672 5.17330 5.24609 5.36584 5.50891 5.66776 5.75569 5.83984 5.85501 6.17694 6.25984 6.32384 6.44269 6.56773 6.77813 6.85502 7.23788 7.26172 7.37067 7.54029 7.74606 8.09471 8.79077 9.39754 10.89618 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.021795 B = 0.002957 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.387971 B = 9466.241031 C = 9889.758402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.132 3.868 3 N -1.101 6.101 4 S 2.688 3.312 5 O -0.962 6.962 6 O -0.937 6.937 7 C -0.706 4.706 8 C -0.023 4.023 9 C -0.146 4.146 10 C 0.029 3.971 11 C 0.040 3.960 12 C -0.519 4.519 13 H 0.059 0.941 14 C 0.062 3.938 15 N -0.892 5.892 16 Si 0.899 3.101 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.275 1.275 20 C -0.147 4.147 21 C -0.020 4.020 22 C -0.159 4.159 23 C 0.053 3.947 24 O -0.347 6.347 25 C 0.463 3.537 26 O -0.406 6.406 27 H 0.099 0.901 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.419 0.581 31 H 0.136 0.864 32 H 0.129 0.871 33 H 0.035 0.965 34 H 0.034 0.966 35 H 0.265 0.735 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.087 0.913 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.684 -12.598 0.812 22.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.040 3.960 3 N -0.860 5.860 4 S 2.781 3.219 5 O -0.952 6.952 6 O -0.927 6.927 7 C -0.795 4.795 8 C -0.042 4.042 9 C -0.165 4.165 10 C 0.029 3.971 11 C 0.003 3.997 12 C -0.557 4.557 13 H 0.077 0.923 14 C -0.141 4.141 15 N -0.530 5.530 16 Si 0.726 3.274 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.200 1.200 20 C -0.166 4.166 21 C -0.039 4.039 22 C -0.198 4.198 23 C -0.022 4.022 24 O -0.264 6.264 25 C 0.297 3.703 26 O -0.283 6.283 27 H 0.117 0.883 28 H 0.112 0.888 29 H 0.109 0.891 30 H 0.254 0.746 31 H 0.154 0.846 32 H 0.147 0.853 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.074 0.926 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.127 0.873 39 H 0.126 0.874 40 H 0.105 0.895 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 18.646 -12.257 -0.637 22.322 hybrid contribution -0.742 0.970 0.679 1.398 sum 17.903 -11.287 0.042 21.164 Atomic orbital electron populations 1.23005 0.89924 1.06232 1.06272 1.21299 0.97191 0.82996 0.94519 1.55772 1.39968 1.18623 1.71610 1.02058 0.73866 0.72224 0.73791 1.93584 1.70884 1.44321 1.86461 1.93661 1.84417 1.78230 1.36408 1.30296 1.19320 1.16658 1.13240 1.20918 0.91574 0.94442 0.97311 1.21250 0.97392 1.01270 0.96594 1.21124 0.97088 0.86908 0.92010 1.18533 0.87343 0.98129 0.95702 1.20932 1.04033 1.09724 1.21037 0.92321 1.24995 0.97002 0.97219 0.94853 1.69935 1.16868 1.39318 1.26856 0.86536 0.78610 0.82947 0.79290 1.20001 1.21098 1.20032 1.21228 0.91951 1.01741 1.01645 1.20695 0.98640 0.92832 0.91782 1.23339 0.99914 0.99615 0.96885 1.24214 0.97783 1.02372 0.77817 1.87114 1.67700 1.40616 1.30940 1.23472 0.76788 0.79323 0.90725 1.90861 1.53494 1.63934 1.20024 0.88267 0.88832 0.89069 0.74602 0.84620 0.85263 0.94697 0.94741 0.92551 0.85375 0.85608 0.87340 0.87415 0.89468 0.86684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.90 6.28 37.16 0.23 -1.67 16 2 C 0.13 1.18 1.04 -131.88 -0.14 1.04 16 3 N -1.10 -10.36 5.52 0.49 0.00 -10.36 16 4 S 2.69 37.32 5.31 -107.50 -0.57 36.75 16 5 O -0.96 -15.56 17.58 -57.17 -1.01 -16.57 16 6 O -0.94 -15.81 13.88 -65.16 -0.90 -16.72 16 7 C -0.71 -10.36 4.20 -39.59 -0.17 -10.53 16 8 C -0.02 -0.35 6.70 -39.59 -0.27 -0.62 16 9 C -0.15 -2.54 9.70 -39.58 -0.38 -2.92 16 10 C 0.03 0.57 5.07 -104.62 -0.53 0.04 16 11 C 0.04 0.94 5.10 -29.03 -0.15 0.79 16 12 C -0.52 -13.80 9.09 -34.44 -0.31 -14.11 16 13 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 15 N -0.89 -25.11 13.29 55.43 0.74 -24.38 16 16 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 17 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 20 C -0.15 -2.54 9.70 -39.58 -0.38 -2.92 16 21 C -0.02 -0.30 9.53 -39.59 -0.38 -0.68 16 22 C -0.16 -0.71 6.45 -25.12 -0.16 -0.87 16 23 C 0.05 0.23 7.93 37.98 0.30 0.53 16 24 O -0.35 -3.38 11.06 -38.47 -0.43 -3.81 16 25 C 0.46 5.58 7.48 36.32 0.27 5.85 16 26 O -0.41 -6.70 16.17 -25.01 -0.40 -7.10 16 27 H 0.10 0.94 6.30 -51.93 -0.33 0.61 16 28 H 0.09 1.10 3.82 -51.93 -0.20 0.90 16 29 H 0.09 0.68 8.07 -51.93 -0.42 0.26 16 30 H 0.42 2.58 8.60 -34.47 -0.30 2.29 16 31 H 0.14 1.87 6.00 -52.48 -0.31 1.56 16 32 H 0.13 2.16 8.06 -52.48 -0.42 1.73 16 33 H 0.03 0.86 8.09 -51.93 -0.42 0.44 16 34 H 0.03 0.85 8.08 -51.93 -0.42 0.43 16 35 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 36 H 0.13 2.12 8.06 -52.48 -0.42 1.69 16 37 H 0.13 1.57 7.87 -52.49 -0.41 1.15 16 38 H 0.11 0.27 7.86 -51.93 -0.41 -0.14 16 39 H 0.11 0.34 7.76 -51.93 -0.40 -0.06 16 40 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.12 0.22 8.14 -51.93 -0.42 -0.20 16 LS Contribution 348.29 15.07 5.25 5.25 Total: -1.00 -35.81 348.29 -9.35 -45.17 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -4.85 Total: 0.39 kcal Atomic # 6 Polarization: -22.34 SS G_CDS: -2.16 Total: -24.50 kcal Atomic # 7 Polarization: -35.48 SS G_CDS: 0.74 Total: -34.74 kcal Atomic # 8 Polarization: -41.45 SS G_CDS: -2.74 Total: -44.19 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 37.32 SS G_CDS: -0.57 Total: 36.75 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -35.81 -9.35 -45.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885197151.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.116 kcal (2) G-P(sol) polarization free energy of solvation -35.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds